Wall clock time and date at job start Tue Mar 31 2020 22:52:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30742 * 1 3 3 Si 1.86797 * 119.99780 * 2 1 4 4 H 1.48507 * 109.47272 * 270.00204 * 3 2 1 5 5 H 1.48510 * 109.47373 * 29.99939 * 3 2 1 6 6 H 1.48499 * 109.47242 * 150.00275 * 3 2 1 7 7 C 1.40027 * 120.00369 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00339 * 192.10714 * 7 2 1 9 9 C 1.41545 * 119.99830 * 12.10087 * 7 2 1 10 10 C 1.41165 * 120.99845 * 201.12403 * 9 7 2 11 11 C 1.36587 * 119.12670 * 180.02562 * 10 9 7 12 12 N 1.32074 * 121.26406 * 359.74403 * 11 10 9 13 13 C 1.32493 * 122.22269 * 0.53393 * 12 11 10 14 14 N 1.39458 * 119.64883 * 179.74618 * 13 12 11 15 15 C 1.34786 * 119.99709 * 6.01383 * 14 13 12 16 16 O 1.21574 * 119.99826 * 355.45547 * 15 14 13 17 17 N 1.34774 * 119.99715 * 175.45870 * 15 14 13 18 18 C 1.46505 * 119.99733 * 179.97438 * 17 15 14 19 19 H 1.09002 * 109.46603 * 34.99900 * 18 17 15 20 20 C 1.50694 * 109.47271 * 274.99920 * 18 17 15 21 21 N 1.34775 * 120.00083 * 179.97438 * 20 18 17 22 22 O 1.21287 * 120.00151 * 359.97438 * 20 18 17 23 23 C 1.50698 * 109.46866 * 154.99522 * 18 17 15 24 24 C 1.38238 * 120.00072 * 219.99990 * 23 18 17 25 25 C 1.38230 * 120.00132 * 180.02562 * 24 23 18 26 26 C 1.38234 * 119.99973 * 359.95043 * 25 24 23 27 27 C 1.38231 * 120.00104 * 0.02562 * 26 25 24 28 28 C 1.38233 * 120.00279 * 39.98220 * 23 18 17 29 29 C 1.38644 * 120.70783 * 359.46838 * 13 12 11 30 30 H 0.97000 * 120.00414 * 359.97438 * 1 2 3 31 31 H 1.07994 * 120.43773 * 0.02562 * 10 9 7 32 32 H 1.08001 * 119.36867 * 180.02562 * 11 10 9 33 33 H 0.97001 * 120.00529 * 186.01246 * 14 13 12 34 34 H 0.96994 * 120.00394 * 359.97438 * 17 15 14 35 35 H 0.96998 * 119.99892 * 0.02562 * 21 20 18 36 36 H 0.97006 * 119.99909 * 179.97438 * 21 20 18 37 37 H 1.08002 * 119.99794 * 359.97438 * 24 23 18 38 38 H 1.08002 * 120.00364 * 179.97438 * 25 24 23 39 39 H 1.08004 * 120.00117 * 179.72329 * 26 25 24 40 40 H 1.08002 * 120.00530 * 179.97438 * 27 26 25 41 41 H 1.08007 * 119.99868 * 359.97438 * 28 23 18 42 42 H 1.07998 * 120.67041 * 180.27947 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2413 1.6177 0.0000 4 1 2.4888 2.0465 -1.4001 5 1 1.4387 2.6528 0.7001 6 1 3.5389 1.4402 0.7000 7 6 2.0076 -1.2126 -0.0005 8 1 3.0696 -1.2231 0.1956 9 6 1.3235 -2.4247 -0.2581 10 6 1.8597 -3.6639 0.1541 11 6 1.1674 -4.8102 -0.1148 12 7 0.0080 -4.7786 -0.7465 13 6 -0.5401 -3.6457 -1.1609 14 7 -1.7646 -3.6752 -1.8277 15 6 -2.4424 -4.8347 -1.9411 16 8 -1.9492 -5.8692 -1.5356 17 7 -3.6668 -4.8471 -2.5042 18 6 -4.4033 -6.1075 -2.6280 19 1 -4.1912 -6.7385 -1.7649 20 6 -3.9758 -6.8176 -3.8866 21 7 -4.5236 -8.0060 -4.2091 22 8 -3.1386 -6.3197 -4.6093 23 6 -5.8816 -5.8215 -2.6900 24 6 -6.7726 -6.6394 -2.0207 25 6 -8.1286 -6.3773 -2.0779 26 6 -8.5936 -5.2967 -2.8038 27 6 -7.7027 -4.4785 -3.4727 28 6 -6.3467 -4.7409 -3.4159 29 6 0.0879 -2.4307 -0.9337 30 1 -0.4851 0.8400 0.0004 31 1 2.8047 -3.7049 0.6751 32 1 1.5738 -5.7603 0.1991 33 1 -2.1286 -2.8613 -2.2098 34 1 -4.0604 -4.0217 -2.8274 35 1 -5.1934 -8.4040 -3.6313 36 1 -4.2487 -8.4629 -5.0194 37 1 -6.4092 -7.4837 -1.4536 38 1 -8.8247 -7.0166 -1.5553 39 1 -9.6535 -5.0945 -2.8522 40 1 -8.0660 -3.6344 -4.0402 41 1 -5.6505 -4.1014 -3.9384 42 1 -0.3615 -1.5073 -1.2678 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001434735999.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:52:34 Heat of formation + Delta-G solvation = -19.290436 kcal Electronic energy + Delta-G solvation = -28271.130339 eV Core-core repulsion = 24215.267066 eV Total energy + Delta-G solvation = -4055.863273 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.132 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.90481 -40.85441 -39.69067 -39.55859 -36.30937 -35.81482 -35.51698 -34.78563 -32.52207 -32.22510 -31.80201 -30.29279 -28.03007 -27.82155 -24.05637 -23.76771 -23.39732 -23.15245 -21.85482 -21.22419 -19.86445 -19.45122 -18.74324 -18.35242 -17.73911 -17.32809 -17.06179 -16.49424 -16.27132 -16.20254 -16.01521 -15.86330 -15.49363 -15.40945 -15.08928 -14.79313 -14.60276 -14.35056 -14.26079 -14.13401 -13.68902 -13.40380 -13.13549 -12.86907 -12.68584 -12.16992 -12.05229 -11.94581 -11.87540 -11.66226 -11.49322 -11.36549 -11.19011 -10.73545 -10.29059 -9.92460 -9.85928 -9.73836 -9.61753 -8.83731 -8.58007 -6.57352 0.26120 0.46406 0.83894 1.02188 1.41715 1.43916 1.54944 1.55089 1.60160 2.16075 2.20704 2.56375 2.84226 2.86371 3.18646 3.41712 3.79140 3.84414 3.97174 4.10379 4.14113 4.25130 4.31401 4.59128 4.66280 4.73114 4.84905 4.93533 4.95851 5.09954 5.11237 5.20365 5.27728 5.51263 5.51880 5.54805 5.60765 5.65737 5.76302 5.83269 5.98620 6.04466 6.25200 6.34615 6.57413 6.79154 6.84123 6.89961 7.25249 7.55078 7.89786 8.27496 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.015376 B = 0.002630 C = 0.002384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1820.550321 B =10644.625719 C =11742.596567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.811 5.811 2 C 0.035 3.965 3 Si 0.992 3.008 4 H -0.262 1.262 5 H -0.266 1.266 6 H -0.259 1.259 7 C -0.477 4.477 8 H 0.084 0.916 9 C 0.110 3.890 10 C -0.298 4.298 11 C 0.112 3.888 12 N -0.581 5.581 13 C 0.350 3.650 14 N -0.659 5.659 15 C 0.698 3.302 16 O -0.574 6.574 17 N -0.713 5.713 18 C 0.194 3.806 19 H 0.118 0.882 20 C 0.507 3.493 21 N -0.828 5.828 22 O -0.581 6.581 23 C -0.105 4.105 24 C -0.106 4.106 25 C -0.114 4.114 26 C -0.114 4.114 27 C -0.120 4.120 28 C -0.121 4.121 29 C -0.266 4.266 30 H 0.292 0.708 31 H 0.117 0.883 32 H 0.147 0.853 33 H 0.418 0.582 34 H 0.409 0.591 35 H 0.417 0.583 36 H 0.409 0.591 37 H 0.147 0.853 38 H 0.153 0.847 39 H 0.148 0.852 40 H 0.141 0.859 41 H 0.118 0.882 42 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.146 -7.335 -6.058 23.187 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.436 5.436 2 C -0.182 4.182 3 Si 0.812 3.188 4 H -0.186 1.186 5 H -0.190 1.190 6 H -0.182 1.182 7 C -0.507 4.507 8 H 0.103 0.897 9 C 0.102 3.898 10 C -0.322 4.322 11 C -0.041 4.041 12 N -0.301 5.301 13 C 0.123 3.877 14 N -0.308 5.308 15 C 0.398 3.602 16 O -0.448 6.448 17 N -0.370 5.370 18 C 0.084 3.916 19 H 0.136 0.864 20 C 0.290 3.710 21 N -0.393 5.393 22 O -0.459 6.459 23 C -0.106 4.106 24 C -0.125 4.125 25 C -0.132 4.132 26 C -0.131 4.131 27 C -0.138 4.138 28 C -0.140 4.140 29 C -0.292 4.292 30 H 0.103 0.897 31 H 0.135 0.865 32 H 0.165 0.835 33 H 0.255 0.745 34 H 0.246 0.754 35 H 0.248 0.752 36 H 0.241 0.759 37 H 0.164 0.836 38 H 0.171 0.829 39 H 0.166 0.834 40 H 0.159 0.841 41 H 0.136 0.864 42 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -20.879 -8.507 -6.178 23.377 hybrid contribution 0.636 1.783 -0.257 1.910 sum -20.244 -6.724 -6.435 22.281 Atomic orbital electron populations 1.69770 1.08959 1.30772 1.34144 1.26877 0.95711 1.04696 0.90879 0.85049 0.78928 0.75247 0.79557 1.18625 1.18992 1.18225 1.19913 0.96782 0.91068 1.42950 0.89737 1.18034 0.91243 0.93423 0.87141 1.21824 1.04369 0.93821 1.12173 1.21908 0.89987 0.97810 0.94358 1.67310 1.14219 1.28135 1.20440 1.18199 0.85985 0.90442 0.93050 1.42366 1.19548 1.10956 1.57892 1.16122 0.81216 0.83907 0.78985 1.90949 1.68429 1.31716 1.53687 1.44666 1.16377 1.10577 1.65428 1.19456 0.89323 0.86279 0.96525 0.86435 1.21254 0.80275 0.82268 0.87210 1.43531 1.44967 1.21302 1.29470 1.90749 1.34049 1.67659 1.53483 1.19422 0.90972 0.98691 1.01476 1.21264 0.93444 0.99627 0.98135 1.21492 0.95121 0.97903 0.98685 1.21616 1.01025 0.94540 0.95965 1.21396 0.92333 1.00424 0.99679 1.21091 0.96951 0.97088 0.98831 1.21768 1.01201 0.95716 1.10558 0.89696 0.86539 0.83547 0.74472 0.75408 0.75199 0.75903 0.83565 0.82908 0.83423 0.84107 0.86443 0.84567 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -40.08 10.50 21.84 0.23 -39.85 16 2 C 0.04 1.69 5.31 85.29 0.45 2.15 16 3 Si 0.99 36.42 29.58 68.60 2.03 38.45 16 4 H -0.26 -9.34 7.11 99.48 0.71 -8.63 16 5 H -0.27 -9.19 7.11 99.48 0.71 -8.49 16 6 H -0.26 -9.32 7.11 99.48 0.71 -8.61 16 7 C -0.48 -25.18 9.15 23.52 0.22 -24.96 16 8 H 0.08 4.26 7.88 -2.91 -0.02 4.23 16 9 C 0.11 6.08 5.65 -21.11 -0.12 5.96 16 10 C -0.30 -15.41 9.85 22.60 0.22 -15.18 16 11 C 0.11 5.75 11.10 84.27 0.94 6.69 16 12 N -0.58 -32.09 7.86 -194.27 -1.53 -33.62 16 13 C 0.35 18.45 7.42 132.76 0.98 19.43 16 14 N -0.66 -28.82 5.40 -322.36 -1.74 -30.55 16 15 C 0.70 29.81 8.35 179.05 1.50 31.31 16 16 O -0.57 -29.21 14.26 -3.95 -0.06 -29.27 16 17 N -0.71 -22.23 4.56 -465.05 -2.12 -24.35 16 18 C 0.19 5.00 2.58 43.50 0.11 5.11 16 19 H 0.12 3.16 7.44 -2.39 -0.02 3.15 16 20 C 0.51 14.31 7.44 87.66 0.65 14.96 16 21 N -0.83 -14.38 8.77 -173.53 -1.52 -15.91 16 22 O -0.58 -22.68 17.16 -3.05 -0.05 -22.73 16 23 C -0.10 -1.91 4.74 -19.87 -0.09 -2.01 16 24 C -0.11 -1.38 9.51 22.27 0.21 -1.17 16 25 C -0.11 -1.15 10.05 22.27 0.22 -0.92 16 26 C -0.11 -1.19 10.05 22.27 0.22 -0.97 16 27 C -0.12 -1.60 10.05 22.27 0.22 -1.38 16 28 C -0.12 -2.12 9.05 22.27 0.20 -1.91 16 29 C -0.27 -14.40 8.67 23.00 0.20 -14.20 16 30 H 0.29 12.84 8.29 -92.71 -0.77 12.07 16 31 H 0.12 5.46 8.06 -2.91 -0.02 5.43 16 32 H 0.15 6.48 8.06 -2.91 -0.02 6.46 16 33 H 0.42 15.15 8.72 -92.71 -0.81 14.34 16 34 H 0.41 10.46 6.89 -92.71 -0.64 9.82 16 35 H 0.42 4.27 8.56 -92.71 -0.79 3.48 16 36 H 0.41 6.24 8.93 -92.70 -0.83 5.41 16 37 H 0.15 1.31 8.04 -2.91 -0.02 1.28 16 38 H 0.15 0.72 8.06 -2.91 -0.02 0.70 16 39 H 0.15 0.81 8.06 -2.91 -0.02 0.79 16 40 H 0.14 1.35 8.06 -2.91 -0.02 1.33 16 41 H 0.12 2.12 6.92 -2.91 -0.02 2.10 16 42 H 0.14 7.28 5.81 -2.91 -0.02 7.26 16 Total: -1.00 -82.25 366.13 -0.55 -82.80 By element: Atomic # 1 Polarization: 54.05 SS G_CDS: -1.93 Total: 52.12 kcal Atomic # 6 Polarization: 16.76 SS G_CDS: 6.14 Total: 22.91 kcal Atomic # 7 Polarization: -137.59 SS G_CDS: -6.68 Total: -144.27 kcal Atomic # 8 Polarization: -51.89 SS G_CDS: -0.11 Total: -52.00 kcal Atomic # 14 Polarization: 36.42 SS G_CDS: 2.03 Total: 38.45 kcal Total: -82.25 -0.55 -82.80 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001434735999.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.511 kcal (2) G-P(sol) polarization free energy of solvation -82.249 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.552 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.801 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.290 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds