Wall clock time and date at job start Tue Mar 31 2020 22:52:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30744 * 1 3 3 Si 1.86802 * 119.99437 * 2 1 4 4 H 1.48498 * 109.47221 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47343 * 299.99915 * 3 2 1 6 6 H 1.48502 * 109.47197 * 59.99997 * 3 2 1 7 7 C 1.40023 * 120.00382 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99817 * 170.15253 * 7 2 1 9 9 C 1.41546 * 120.00131 * 350.15821 * 7 2 1 10 10 C 1.41162 * 120.99966 * 151.70181 * 9 7 2 11 11 C 1.36582 * 119.12970 * 180.02562 * 10 9 7 12 12 N 1.32076 * 121.25754 * 359.74179 * 11 10 9 13 13 C 1.32485 * 122.22737 * 0.53335 * 12 11 10 14 14 N 1.39468 * 119.64850 * 179.74639 * 13 12 11 15 15 C 1.34779 * 119.99535 * 5.08275 * 14 13 12 16 16 O 1.21579 * 120.00100 * 354.98260 * 15 14 13 17 17 N 1.34779 * 119.99633 * 174.97815 * 15 14 13 18 18 C 1.46491 * 119.99985 * 180.02562 * 17 15 14 19 19 H 1.09003 * 109.47153 * 324.99720 * 18 17 15 20 20 C 1.50701 * 109.47711 * 84.99865 * 18 17 15 21 21 N 1.34766 * 120.00549 * 180.02562 * 20 18 17 22 22 O 1.21289 * 119.99534 * 0.02562 * 20 18 17 23 23 C 1.50705 * 109.47368 * 205.00163 * 18 17 15 24 24 C 1.38228 * 119.99601 * 319.72365 * 23 18 17 25 25 C 1.38235 * 120.00201 * 179.80605 * 24 23 18 26 26 C 1.38233 * 119.99469 * 0.40416 * 25 24 23 27 27 C 1.38231 * 120.00449 * 359.84990 * 26 25 24 28 28 C 1.38230 * 119.99935 * 139.99604 * 23 18 17 29 29 C 1.38638 * 120.70423 * 359.46885 * 13 12 11 30 30 H 0.96998 * 120.00685 * 359.97438 * 1 2 3 31 31 H 1.08004 * 120.43554 * 359.97438 * 10 9 7 32 32 H 1.08002 * 119.37429 * 179.97438 * 11 10 9 33 33 H 0.96995 * 120.00174 * 185.08313 * 14 13 12 34 34 H 0.96996 * 119.99762 * 359.97438 * 17 15 14 35 35 H 0.97003 * 119.99796 * 0.02562 * 21 20 18 36 36 H 0.96998 * 120.00332 * 179.97438 * 21 20 18 37 37 H 1.08007 * 120.00384 * 359.97438 * 24 23 18 38 38 H 1.08002 * 120.00435 * 180.22737 * 25 24 23 39 39 H 1.08001 * 120.00175 * 179.83173 * 26 25 24 40 40 H 1.08001 * 120.00330 * 179.97438 * 27 26 25 41 41 H 1.07997 * 120.00685 * 359.97438 * 28 23 18 42 42 H 1.08008 * 120.66465 * 180.27674 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2413 1.6178 0.0000 4 1 3.7013 1.3467 0.0006 5 1 1.8825 2.3965 -1.2125 6 1 1.8825 2.3965 1.2125 7 6 2.0076 -1.2126 0.0005 8 1 3.0757 -1.2194 -0.1594 9 6 1.3156 -2.4294 0.2106 10 6 1.7912 -3.6402 -0.3375 11 6 1.0929 -4.7920 -0.1111 12 7 -0.0118 -4.7927 0.6127 13 6 -0.5072 -3.6861 1.1469 14 7 -1.6808 -3.7480 1.8978 15 6 -2.2489 -4.9411 2.1631 16 8 -1.7909 -5.9549 1.6727 17 7 -3.3246 -5.0102 2.9722 18 6 -3.9417 -6.3070 3.2610 19 1 -3.8786 -6.9440 2.3787 20 6 -3.2175 -6.9639 4.4077 21 7 -3.6131 -8.1738 4.8502 22 8 -2.2784 -6.4036 4.9324 23 6 -5.3884 -6.1036 3.6311 24 6 -5.7534 -5.0387 4.4334 25 6 -7.0808 -4.8498 4.7696 26 6 -8.0422 -5.7306 4.3104 27 6 -7.6766 -6.7985 3.5125 28 6 -6.3495 -6.9851 3.1730 29 6 0.1318 -2.4682 0.9722 30 1 -0.4851 0.8400 0.0004 31 1 2.6949 -3.6555 -0.9287 32 1 1.4530 -5.7206 -0.5289 33 1 -2.0882 -2.9325 2.2291 34 1 -3.6896 -4.2014 3.3637 35 1 -4.3639 -8.6220 4.4303 36 1 -3.1467 -8.5967 5.5881 37 1 -5.0018 -4.3527 4.7953 38 1 -7.3665 -4.0157 5.3934 39 1 -9.0790 -5.5846 4.5753 40 1 -8.4276 -7.4869 3.1541 41 1 -6.0639 -7.8194 2.5495 42 1 -0.2702 -1.5672 1.4117 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001434736005.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:52:39 Heat of formation + Delta-G solvation = 7.142663 kcal Electronic energy + Delta-G solvation = -28257.198645 eV Core-core repulsion = 24202.481597 eV Total energy + Delta-G solvation = -4054.717048 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.132 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.71611 -39.39960 -38.79737 -37.84066 -34.88020 -34.15003 -33.76065 -33.64377 -31.47605 -31.16901 -30.42881 -28.62618 -26.86080 -25.92106 -23.13043 -22.42563 -22.09412 -21.77200 -20.41085 -19.95387 -18.40002 -17.81098 -17.55952 -17.30785 -16.63975 -15.99138 -15.62199 -15.35800 -15.07086 -14.71520 -14.54368 -14.36404 -14.17339 -14.12378 -13.80471 -13.62752 -13.45755 -13.02287 -12.79771 -12.58520 -12.54879 -12.25946 -11.53021 -11.40507 -11.36239 -11.16568 -10.87449 -10.41054 -10.23634 -10.07436 -9.75376 -9.70056 -9.60266 -9.34488 -9.29650 -9.18104 -8.82990 -7.89086 -7.67149 -6.97616 -6.70456 -4.57123 0.88942 1.02612 2.58726 2.73254 2.81940 2.86484 3.05315 3.10879 3.26115 3.30632 3.64754 3.89840 3.95848 4.25250 4.50348 4.58384 4.63289 4.76317 4.76693 4.89850 5.05785 5.12509 5.29722 5.54060 5.65805 5.73982 5.97513 6.06205 6.12138 6.14734 6.46985 6.57282 6.59838 6.66727 6.70520 6.84574 7.00252 7.17168 7.21989 7.27890 7.46920 7.53955 7.91956 8.14802 8.21259 8.40301 8.51196 8.77697 8.81551 9.18896 9.77525 10.15922 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.015997 B = 0.002589 C = 0.002368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1749.884231 B =10813.442112 C =11821.366010 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.797 5.797 2 C 0.076 3.924 3 Si 0.913 3.087 4 H -0.260 1.260 5 H -0.274 1.274 6 H -0.272 1.272 7 C -0.456 4.456 8 H 0.081 0.919 9 C 0.145 3.855 10 C -0.281 4.281 11 C 0.118 3.882 12 N -0.550 5.550 13 C 0.356 3.644 14 N -0.664 5.664 15 C 0.701 3.299 16 O -0.531 6.531 17 N -0.731 5.731 18 C 0.193 3.807 19 H 0.123 0.877 20 C 0.510 3.490 21 N -0.854 5.854 22 O -0.521 6.521 23 C -0.092 4.092 24 C -0.105 4.105 25 C -0.114 4.114 26 C -0.116 4.116 27 C -0.116 4.116 28 C -0.106 4.106 29 C -0.239 4.239 30 H 0.279 0.721 31 H 0.102 0.898 32 H 0.122 0.878 33 H 0.405 0.595 34 H 0.395 0.605 35 H 0.399 0.601 36 H 0.401 0.599 37 H 0.125 0.875 38 H 0.126 0.874 39 H 0.123 0.877 40 H 0.126 0.874 41 H 0.129 0.871 42 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.835 -9.036 9.345 22.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.423 5.423 2 C -0.142 4.142 3 Si 0.738 3.262 4 H -0.184 1.184 5 H -0.199 1.199 6 H -0.198 1.198 7 C -0.488 4.488 8 H 0.100 0.900 9 C 0.136 3.864 10 C -0.305 4.305 11 C -0.036 4.036 12 N -0.269 5.269 13 C 0.129 3.871 14 N -0.311 5.311 15 C 0.401 3.599 16 O -0.401 6.401 17 N -0.389 5.389 18 C 0.083 3.917 19 H 0.141 0.859 20 C 0.292 3.708 21 N -0.419 5.419 22 O -0.395 6.395 23 C -0.093 4.093 24 C -0.124 4.124 25 C -0.132 4.132 26 C -0.134 4.134 27 C -0.134 4.134 28 C -0.124 4.124 29 C -0.265 4.265 30 H 0.090 0.910 31 H 0.120 0.880 32 H 0.140 0.860 33 H 0.239 0.761 34 H 0.230 0.770 35 H 0.227 0.773 36 H 0.232 0.768 37 H 0.143 0.857 38 H 0.144 0.856 39 H 0.141 0.859 40 H 0.144 0.856 41 H 0.147 0.853 42 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -17.446 -10.119 9.241 22.185 hybrid contribution 0.160 2.017 0.298 2.045 sum -17.287 -8.102 9.539 21.342 Atomic orbital electron populations 1.69760 1.07522 1.28998 1.36036 1.25925 0.94865 1.01341 0.92080 0.86177 0.80856 0.80671 0.78510 1.18394 1.19947 1.19755 1.19585 0.95828 0.89977 1.43408 0.90042 1.17579 0.90161 0.92286 0.86362 1.21702 1.04569 0.94718 1.09497 1.21480 0.90831 0.96532 0.94713 1.67195 1.15353 1.28246 1.16092 1.17947 0.85887 0.90886 0.92336 1.42453 1.25938 1.07418 1.55301 1.15943 0.79739 0.84732 0.79535 1.90997 1.62336 1.33211 1.53590 1.44829 1.33289 1.07708 1.53034 1.19311 0.87749 0.87249 0.97418 0.85903 1.21032 0.83920 0.81477 0.84340 1.43765 1.37630 1.21016 1.39453 1.90784 1.27724 1.63614 1.57353 1.19640 0.93209 0.97091 0.99341 1.21027 0.96711 0.97352 0.97294 1.21166 0.92720 0.99437 0.99860 1.21239 0.99589 0.94914 0.97628 1.21148 0.95870 0.98116 0.98218 1.21031 0.92696 0.99178 0.99523 1.21547 1.01511 0.95303 1.08105 0.90962 0.87997 0.86031 0.76094 0.76953 0.77341 0.76843 0.85741 0.85648 0.85870 0.85587 0.85317 0.85314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -19.97 10.83 55.55 0.60 -19.37 16 2 C 0.08 1.86 5.30 -17.35 -0.09 1.77 16 3 Si 0.91 18.35 29.57 -169.99 -5.03 13.32 16 4 H -0.26 -5.20 7.11 56.52 0.40 -4.80 16 5 H -0.27 -5.43 7.11 56.52 0.40 -5.03 16 6 H -0.27 -5.37 7.11 56.52 0.40 -4.96 16 7 C -0.46 -11.98 9.13 -37.65 -0.34 -12.32 16 8 H 0.08 2.05 7.87 -52.48 -0.41 1.64 16 9 C 0.14 3.90 5.58 -106.55 -0.59 3.31 16 10 C -0.28 -7.11 9.85 -39.07 -0.38 -7.49 16 11 C 0.12 2.96 11.10 -18.04 -0.20 2.75 16 12 N -0.55 -14.71 7.86 -12.76 -0.10 -14.81 16 13 C 0.36 9.04 7.42 -154.68 -1.15 7.89 16 14 N -0.66 -13.95 5.40 -15.86 -0.09 -14.03 16 15 C 0.70 14.40 8.35 -86.91 -0.73 13.67 16 16 O -0.53 -12.99 14.26 5.30 0.08 -12.91 16 17 N -0.73 -11.01 4.56 -60.96 -0.28 -11.29 16 18 C 0.19 2.46 2.58 -70.24 -0.18 2.28 16 19 H 0.12 1.61 7.44 -51.93 -0.39 1.22 16 20 C 0.51 7.14 7.44 -10.99 -0.08 7.06 16 21 N -0.85 -7.80 8.77 31.22 0.27 -7.52 16 22 O -0.52 -9.92 17.16 5.55 0.10 -9.82 16 23 C -0.09 -0.87 4.74 -104.63 -0.50 -1.37 16 24 C -0.11 -0.95 9.05 -39.59 -0.36 -1.31 16 25 C -0.11 -0.86 10.05 -39.58 -0.40 -1.25 16 26 C -0.12 -0.77 10.05 -39.59 -0.40 -1.17 16 27 C -0.12 -0.75 10.05 -39.58 -0.40 -1.15 16 28 C -0.11 -0.79 9.51 -39.58 -0.38 -1.17 16 29 C -0.24 -6.25 8.60 -38.46 -0.33 -6.58 16 30 H 0.28 6.33 8.29 -40.82 -0.34 5.99 16 31 H 0.10 2.35 8.06 -52.48 -0.42 1.93 16 32 H 0.12 2.66 8.06 -52.49 -0.42 2.24 16 33 H 0.40 7.02 8.71 -40.82 -0.36 6.66 16 34 H 0.40 4.89 6.91 -40.82 -0.28 4.61 16 35 H 0.40 2.38 8.56 -40.82 -0.35 2.03 16 36 H 0.40 3.26 8.93 -40.82 -0.36 2.90 16 37 H 0.12 1.11 6.93 -52.48 -0.36 0.74 16 38 H 0.13 0.72 8.06 -52.49 -0.42 0.30 16 39 H 0.12 0.57 8.06 -52.49 -0.42 0.15 16 40 H 0.13 0.55 8.06 -52.49 -0.42 0.13 16 41 H 0.13 0.72 8.04 -52.49 -0.42 0.29 16 42 H 0.13 3.34 6.27 -52.48 -0.33 3.01 16 LS Contribution 366.76 15.07 5.53 5.53 Total: -1.00 -37.02 366.76 -9.94 -46.95 By element: Atomic # 1 Polarization: 23.56 SS G_CDS: -4.51 Total: 19.05 kcal Atomic # 6 Polarization: 11.42 SS G_CDS: -6.51 Total: 4.91 kcal Atomic # 7 Polarization: -67.43 SS G_CDS: 0.41 Total: -67.02 kcal Atomic # 8 Polarization: -22.91 SS G_CDS: 0.17 Total: -22.74 kcal Atomic # 14 Polarization: 18.35 SS G_CDS: -5.03 Total: 13.32 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -37.02 -9.94 -46.95 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001434736005.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.095 kcal (2) G-P(sol) polarization free energy of solvation -37.015 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.937 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.953 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds