Wall clock time and date at job start Tue Mar 31 2020 22:48:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86806 * 119.99839 * 2 1 4 4 H 1.48497 * 109.46895 * 359.97438 * 3 2 1 5 5 H 1.48495 * 109.46957 * 119.99852 * 3 2 1 6 6 H 1.48501 * 109.46761 * 239.99843 * 3 2 1 7 7 C 1.37869 * 120.00032 * 180.27157 * 2 1 3 8 8 H 1.08008 * 120.00309 * 173.28029 * 7 2 1 9 9 C 1.50700 * 120.00160 * 353.27812 * 7 2 1 10 10 H 1.08994 * 109.47405 * 326.91016 * 9 7 2 11 11 C 1.53005 * 109.47299 * 206.90965 * 9 7 2 12 12 C 1.50698 * 109.46990 * 65.97885 * 11 9 7 13 13 O 1.21283 * 120.00269 * 359.97438 * 12 11 9 14 14 N 1.34777 * 119.99686 * 180.02562 * 12 11 9 15 15 N 1.40104 * 119.99935 * 180.02562 * 14 12 11 16 16 C 1.34766 * 120.00193 * 179.97438 * 15 14 12 17 17 O 1.21519 * 120.00266 * 359.97438 * 16 15 14 18 18 C 1.48155 * 120.00348 * 179.97438 * 16 15 14 19 19 C 1.39714 * 120.18687 * 179.72345 * 18 16 15 20 20 C 1.38827 * 117.89961 * 179.78193 * 19 18 16 21 21 C 1.38576 * 118.06936 * 0.48228 * 20 19 18 22 22 N 1.32176 * 120.06393 * 359.74938 * 21 20 19 23 23 N 1.28353 * 122.30150 * 0.02562 * 22 21 20 24 24 C 1.50705 * 109.46907 * 86.91070 * 9 7 2 25 25 C 1.38237 * 120.00118 * 54.45011 * 24 9 7 26 26 C 1.38237 * 119.99818 * 179.78603 * 25 24 9 27 27 C 1.38236 * 120.00003 * 0.44191 * 26 25 24 28 28 C 1.38236 * 119.99991 * 359.81061 * 27 26 25 29 29 C 1.38228 * 119.99825 * 234.71903 * 24 9 7 30 30 H 0.97008 * 120.00303 * 174.41969 * 1 2 3 31 31 H 1.09000 * 109.47313 * 185.98052 * 11 9 7 32 32 H 1.09003 * 109.46698 * 305.97603 * 11 9 7 33 33 H 0.97002 * 120.00379 * 359.97438 * 14 12 11 34 34 H 0.97002 * 119.99686 * 359.97438 * 15 14 12 35 35 H 1.08001 * 121.05223 * 0.02562 * 19 18 16 36 36 H 1.07998 * 120.96472 * 180.20601 * 20 19 18 37 37 H 1.07997 * 119.96827 * 179.76932 * 21 20 19 38 38 H 1.08005 * 119.99967 * 359.97438 * 25 24 9 39 39 H 1.07999 * 119.99448 * 180.27078 * 26 25 24 40 40 H 1.07997 * 119.99991 * 179.83259 * 27 26 25 41 41 H 1.07993 * 119.99965 * 180.02562 * 28 27 26 42 42 H 1.07999 * 120.00249 * 359.97438 * 29 24 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 1.2840 2.7464 -0.0006 5 1 3.1027 1.6965 1.2125 6 1 3.1028 1.6964 -1.2125 7 6 2.0044 -1.1940 -0.0057 8 1 3.0789 -1.1967 -0.1151 9 6 1.2587 -2.4953 0.1409 10 1 0.3928 -2.3472 0.7860 11 6 2.1827 -3.5456 0.7608 12 6 2.5235 -3.1443 2.1728 13 8 2.0722 -2.1189 2.6375 14 7 3.3306 -3.9243 2.9188 15 7 3.6470 -3.5515 4.2318 16 6 4.4537 -4.3317 4.9780 17 8 4.9062 -5.3588 4.5123 18 6 4.7887 -3.9372 6.3662 19 6 5.6199 -4.7461 7.1452 20 6 5.9066 -4.3287 8.4378 21 6 5.3435 -3.1421 8.8799 22 7 4.5629 -2.4401 8.0768 23 7 4.2959 -2.8158 6.8789 24 6 0.8003 -2.9670 -1.2150 25 6 1.7146 -3.1134 -2.2414 26 6 1.2947 -3.5503 -3.4839 27 6 -0.0409 -3.8321 -3.7025 28 6 -0.9560 -3.6808 -2.6775 29 6 -0.5353 -3.2480 -1.4338 30 1 -0.4851 -0.8361 -0.0817 31 1 1.6797 -4.5125 0.7692 32 1 3.0976 -3.6172 0.1724 33 1 3.6919 -4.7442 2.5471 34 1 3.2855 -2.7318 4.6037 35 1 6.0298 -5.6650 6.7528 36 1 6.5461 -4.9140 9.0818 37 1 5.5429 -2.7905 9.8813 38 1 2.7574 -2.8893 -2.0718 39 1 2.0097 -3.6688 -4.2846 40 1 -0.3693 -4.1709 -4.6739 41 1 -1.9993 -3.9013 -2.8481 42 1 -1.2503 -3.1299 -0.6330 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001462491164.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:48:19 Heat of formation + Delta-G solvation = 46.763919 kcal Electronic energy + Delta-G solvation = -27844.448848 eV Core-core repulsion = 23791.449907 eV Total energy + Delta-G solvation = -4052.998941 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.132 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.57087 -40.02880 -38.92465 -38.23868 -35.36470 -34.25496 -33.64436 -33.31342 -31.63612 -30.83226 -30.13613 -28.78792 -25.96591 -25.09579 -24.81040 -23.01385 -21.79844 -21.67950 -20.99742 -19.81096 -18.62915 -17.95493 -17.26459 -17.16494 -16.78742 -16.28073 -15.96218 -15.74582 -15.11433 -14.98540 -14.57462 -14.34656 -14.18261 -14.02202 -13.69046 -13.65401 -13.37013 -12.90606 -12.51046 -12.39782 -11.98286 -11.94301 -11.62492 -11.25314 -10.91070 -10.78444 -10.73180 -10.59916 -10.54954 -10.46948 -10.22719 -10.17897 -10.05223 -9.75750 -9.41958 -8.69002 -8.33801 -8.20228 -8.16343 -7.68286 -6.25908 -3.96357 0.00471 0.29254 1.82182 2.16606 2.22794 2.25090 3.13451 3.29830 3.31562 3.49737 3.55468 3.70937 3.84231 4.01533 4.20330 4.36265 4.54434 4.58328 4.64726 4.68044 5.17449 5.29217 5.37219 5.52045 5.57919 5.59500 5.60323 5.72526 5.88280 5.94605 6.10990 6.27945 6.35893 6.53277 6.70369 6.74108 6.79491 6.90220 7.14540 7.20060 7.33592 7.67128 7.68657 7.82158 7.86219 8.11995 8.15998 8.47060 8.74150 8.93047 9.72901 11.13420 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.013777 B = 0.002665 C = 0.002352 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2031.958538 B =10505.698180 C =11902.680769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.034 3.966 3 Si 1.060 2.940 4 H -0.283 1.283 5 H -0.288 1.288 6 H -0.290 1.290 7 C -0.574 4.574 8 H 0.047 0.953 9 C 0.074 3.926 10 H 0.052 0.948 11 C -0.104 4.104 12 C 0.515 3.485 13 O -0.488 6.488 14 N -0.541 5.541 15 N -0.491 5.491 16 C 0.570 3.430 17 O -0.538 6.538 18 C 0.035 3.965 19 C -0.062 4.062 20 C -0.121 4.121 21 C 0.056 3.944 22 N -0.235 5.235 23 N -0.207 5.207 24 C -0.035 4.035 25 C -0.106 4.106 26 C -0.130 4.130 27 C -0.151 4.151 28 C -0.125 4.125 29 C -0.129 4.129 30 H 0.271 0.729 31 H 0.075 0.925 32 H 0.088 0.912 33 H 0.426 0.574 34 H 0.443 0.557 35 H 0.165 0.835 36 H 0.160 0.840 37 H 0.180 0.820 38 H 0.116 0.884 39 H 0.108 0.892 40 H 0.106 0.894 41 H 0.108 0.892 42 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.095 -12.570 11.525 19.818 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.172 4.172 3 Si 0.888 3.112 4 H -0.209 1.209 5 H -0.214 1.214 6 H -0.217 1.217 7 C -0.611 4.611 8 H 0.065 0.935 9 C 0.054 3.946 10 H 0.070 0.930 11 C -0.146 4.146 12 C 0.302 3.698 13 O -0.357 6.357 14 N -0.294 5.294 15 N -0.236 5.236 16 C 0.352 3.648 17 O -0.413 6.413 18 C -0.113 4.113 19 C -0.092 4.092 20 C -0.150 4.150 21 C -0.107 4.107 22 N -0.078 5.078 23 N -0.054 5.054 24 C -0.036 4.036 25 C -0.124 4.124 26 C -0.148 4.148 27 C -0.169 4.169 28 C -0.143 4.143 29 C -0.147 4.147 30 H 0.083 0.917 31 H 0.093 0.907 32 H 0.106 0.894 33 H 0.267 0.733 34 H 0.287 0.713 35 H 0.183 0.817 36 H 0.178 0.822 37 H 0.197 0.803 38 H 0.134 0.866 39 H 0.126 0.874 40 H 0.124 0.876 41 H 0.126 0.874 42 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 8.875 -9.480 11.341 17.241 hybrid contribution 1.224 -2.829 0.156 3.086 sum 10.099 -12.308 11.497 19.638 Atomic orbital electron populations 1.70741 1.06950 1.31059 1.45056 1.25575 0.96360 1.02225 0.93017 0.83689 0.75154 0.76003 0.76308 1.20886 1.21438 1.21696 1.21550 0.93854 0.90626 1.55058 0.93483 1.17880 0.95516 0.92734 0.88426 0.92965 1.21671 1.02452 1.00718 0.89747 1.21433 0.77146 0.83395 0.87813 1.90805 1.50371 1.22853 1.71630 1.45624 1.53323 1.28278 1.02219 1.44616 1.47727 1.26506 1.04704 1.17469 0.79668 0.83861 0.83764 1.90812 1.54099 1.24616 1.71796 1.22527 0.98140 0.94716 0.95896 1.22416 0.93443 1.00024 0.93299 1.22486 0.99254 0.97170 0.96070 1.24602 0.92394 0.92134 1.01574 1.73219 1.10918 1.25794 0.97895 1.73336 1.15281 1.10915 1.05907 1.20783 0.92580 0.91556 0.98643 1.20934 0.99945 0.99017 0.92465 1.21022 0.95601 1.01104 0.97074 1.20840 0.93756 1.03923 0.98369 1.20968 0.98550 1.00985 0.93770 1.21072 0.96107 1.00638 0.96879 0.91738 0.90696 0.89387 0.73280 0.71301 0.81726 0.82202 0.80275 0.86589 0.87400 0.87553 0.87410 0.87087 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.16 13.56 55.43 0.75 -26.41 16 2 C 0.03 0.97 5.45 -17.83 -0.10 0.88 16 3 Si 1.06 26.01 29.91 -169.99 -5.08 20.92 16 4 H -0.28 -7.02 7.11 56.52 0.40 -6.61 16 5 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 6 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 7 C -0.57 -15.21 6.35 -34.44 -0.22 -15.43 16 8 H 0.05 1.25 7.82 -52.48 -0.41 0.84 16 9 C 0.07 1.70 1.23 -92.92 -0.11 1.59 16 10 H 0.05 1.36 6.59 -51.93 -0.34 1.02 16 11 C -0.10 -1.91 4.95 -27.88 -0.14 -2.05 16 12 C 0.52 9.94 7.70 -10.99 -0.08 9.85 16 13 O -0.49 -11.69 14.86 5.55 0.08 -11.61 16 14 N -0.54 -8.53 6.26 31.22 0.20 -8.34 16 15 N -0.49 -7.54 6.25 30.60 0.19 -7.34 16 16 C 0.57 7.89 7.93 -12.19 -0.10 7.79 16 17 O -0.54 -8.04 16.23 5.35 0.09 -7.95 16 18 C 0.03 0.41 6.83 -82.83 -0.57 -0.16 16 19 C -0.06 -0.50 9.73 -38.81 -0.38 -0.88 16 20 C -0.12 -0.65 10.20 -39.24 -0.40 -1.05 16 21 C 0.06 0.38 11.31 -17.28 -0.20 0.18 16 22 N -0.24 -2.69 11.51 30.59 0.35 -2.34 16 23 N -0.21 -2.70 10.75 33.32 0.36 -2.35 16 24 C -0.03 -0.75 4.53 -104.62 -0.47 -1.22 16 25 C -0.11 -2.09 8.90 -39.58 -0.35 -2.45 16 26 C -0.13 -2.28 10.05 -39.58 -0.40 -2.68 16 27 C -0.15 -2.56 10.05 -39.58 -0.40 -2.95 16 28 C -0.12 -2.23 10.05 -39.58 -0.40 -2.63 16 29 C -0.13 -2.61 9.18 -39.58 -0.36 -2.98 16 30 H 0.27 8.00 6.24 -40.82 -0.25 7.74 16 31 H 0.07 1.17 8.14 -51.93 -0.42 0.74 16 32 H 0.09 1.48 7.97 -51.93 -0.41 1.07 16 33 H 0.43 5.73 8.00 -182.59 -1.46 4.26 16 34 H 0.44 7.14 7.36 -182.59 -1.34 5.80 16 35 H 0.17 1.08 7.72 -52.49 -0.41 0.67 16 36 H 0.16 0.22 8.06 -52.49 -0.42 -0.20 16 37 H 0.18 0.52 8.06 -52.49 -0.42 0.10 16 38 H 0.12 2.24 7.85 -52.48 -0.41 1.83 16 39 H 0.11 1.60 8.06 -52.49 -0.42 1.17 16 40 H 0.11 1.50 8.06 -52.49 -0.42 1.07 16 41 H 0.11 1.64 8.06 -52.49 -0.42 1.22 16 42 H 0.11 2.22 7.95 -52.49 -0.42 1.80 16 LS Contribution 371.00 15.07 5.59 5.59 Total: -1.00 -35.47 371.00 -8.94 -44.41 By element: Atomic # 1 Polarization: 16.39 SS G_CDS: -6.79 Total: 9.60 kcal Atomic # 6 Polarization: -9.51 SS G_CDS: -4.67 Total: -14.18 kcal Atomic # 7 Polarization: -48.62 SS G_CDS: 1.85 Total: -46.78 kcal Atomic # 8 Polarization: -19.73 SS G_CDS: 0.17 Total: -19.56 kcal Atomic # 14 Polarization: 26.01 SS G_CDS: -5.08 Total: 20.92 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -35.47 -8.94 -44.41 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001462491164.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.171 kcal (2) G-P(sol) polarization free energy of solvation -35.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.704 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.940 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.407 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds