Wall clock time and date at job start Tue Mar 31 2020 22:48:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86806 * 119.99839 * 2 1 4 4 H 1.48497 * 109.46895 * 359.97438 * 3 2 1 5 5 H 1.48495 * 109.46957 * 119.99852 * 3 2 1 6 6 H 1.48501 * 109.46761 * 239.99843 * 3 2 1 7 7 C 1.37869 * 120.00032 * 180.27157 * 2 1 3 8 8 H 1.08008 * 120.00309 * 173.28029 * 7 2 1 9 9 C 1.50700 * 120.00160 * 353.27812 * 7 2 1 10 10 H 1.08994 * 109.47405 * 326.91016 * 9 7 2 11 11 C 1.53005 * 109.47299 * 206.90965 * 9 7 2 12 12 C 1.50698 * 109.46990 * 65.97885 * 11 9 7 13 13 O 1.21283 * 120.00269 * 359.97438 * 12 11 9 14 14 N 1.34777 * 119.99686 * 180.02562 * 12 11 9 15 15 N 1.40104 * 119.99935 * 180.02562 * 14 12 11 16 16 C 1.34766 * 120.00193 * 179.97438 * 15 14 12 17 17 O 1.21519 * 120.00266 * 359.97438 * 16 15 14 18 18 C 1.48155 * 120.00348 * 179.97438 * 16 15 14 19 19 C 1.39714 * 120.18687 * 179.72345 * 18 16 15 20 20 C 1.38827 * 117.89961 * 179.78193 * 19 18 16 21 21 C 1.38576 * 118.06936 * 0.48228 * 20 19 18 22 22 N 1.32176 * 120.06393 * 359.74938 * 21 20 19 23 23 N 1.28353 * 122.30150 * 0.02562 * 22 21 20 24 24 C 1.50705 * 109.46907 * 86.91070 * 9 7 2 25 25 C 1.38237 * 120.00118 * 54.45011 * 24 9 7 26 26 C 1.38237 * 119.99818 * 179.78603 * 25 24 9 27 27 C 1.38236 * 120.00003 * 0.44191 * 26 25 24 28 28 C 1.38236 * 119.99991 * 359.81061 * 27 26 25 29 29 C 1.38228 * 119.99825 * 234.71903 * 24 9 7 30 30 H 0.97008 * 120.00303 * 174.41969 * 1 2 3 31 31 H 1.09000 * 109.47313 * 185.98052 * 11 9 7 32 32 H 1.09003 * 109.46698 * 305.97603 * 11 9 7 33 33 H 0.97002 * 120.00379 * 359.97438 * 14 12 11 34 34 H 0.97002 * 119.99686 * 359.97438 * 15 14 12 35 35 H 1.08001 * 121.05223 * 0.02562 * 19 18 16 36 36 H 1.07998 * 120.96472 * 180.20601 * 20 19 18 37 37 H 1.07997 * 119.96827 * 179.76932 * 21 20 19 38 38 H 1.08005 * 119.99967 * 359.97438 * 25 24 9 39 39 H 1.07999 * 119.99448 * 180.27078 * 26 25 24 40 40 H 1.07997 * 119.99991 * 179.83259 * 27 26 25 41 41 H 1.07993 * 119.99965 * 180.02562 * 28 27 26 42 42 H 1.07999 * 120.00249 * 359.97438 * 29 24 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 1.2840 2.7464 -0.0006 5 1 3.1027 1.6965 1.2125 6 1 3.1028 1.6964 -1.2125 7 6 2.0044 -1.1940 -0.0057 8 1 3.0789 -1.1967 -0.1151 9 6 1.2587 -2.4953 0.1409 10 1 0.3928 -2.3472 0.7860 11 6 2.1827 -3.5456 0.7608 12 6 2.5235 -3.1443 2.1728 13 8 2.0722 -2.1189 2.6375 14 7 3.3306 -3.9243 2.9188 15 7 3.6470 -3.5515 4.2318 16 6 4.4537 -4.3317 4.9780 17 8 4.9062 -5.3588 4.5123 18 6 4.7887 -3.9372 6.3662 19 6 5.6199 -4.7461 7.1452 20 6 5.9066 -4.3287 8.4378 21 6 5.3435 -3.1421 8.8799 22 7 4.5629 -2.4401 8.0768 23 7 4.2959 -2.8158 6.8789 24 6 0.8003 -2.9670 -1.2150 25 6 1.7146 -3.1134 -2.2414 26 6 1.2947 -3.5503 -3.4839 27 6 -0.0409 -3.8321 -3.7025 28 6 -0.9560 -3.6808 -2.6775 29 6 -0.5353 -3.2480 -1.4338 30 1 -0.4851 -0.8361 -0.0817 31 1 1.6797 -4.5125 0.7692 32 1 3.0976 -3.6172 0.1724 33 1 3.6919 -4.7442 2.5471 34 1 3.2855 -2.7318 4.6037 35 1 6.0298 -5.6650 6.7528 36 1 6.5461 -4.9140 9.0818 37 1 5.5429 -2.7905 9.8813 38 1 2.7574 -2.8893 -2.0718 39 1 2.0097 -3.6688 -4.2846 40 1 -0.3693 -4.1709 -4.6739 41 1 -1.9993 -3.9013 -2.8481 42 1 -1.2503 -3.1299 -0.6330 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001462491164.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:48:18 Heat of formation + Delta-G solvation = 21.490979 kcal Electronic energy + Delta-G solvation = -27845.544765 eV Core-core repulsion = 23791.449907 eV Total energy + Delta-G solvation = -4054.094858 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.132 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.36021 -41.30969 -40.32370 -39.68775 -36.74437 -35.99494 -34.30306 -34.17539 -33.40595 -32.22408 -31.59189 -30.23486 -27.24265 -26.37983 -25.65686 -24.69995 -23.21217 -22.83967 -22.37365 -21.40009 -19.74637 -19.13235 -18.77182 -18.07616 -17.94923 -17.52371 -17.08822 -17.03854 -16.52313 -16.13338 -15.83084 -15.66768 -15.62436 -15.36898 -15.10116 -14.89766 -14.60133 -14.21494 -14.06670 -13.97087 -13.54175 -13.21866 -12.85946 -12.73308 -12.63110 -12.44567 -12.08929 -11.95830 -11.75739 -11.64824 -11.51803 -11.38684 -11.30791 -11.05711 -10.90660 -10.61578 -10.40933 -9.62637 -9.55320 -9.27375 -8.43947 -6.12009 -0.71650 -0.30702 0.57878 0.69644 0.78169 1.24381 1.49102 1.58798 1.71202 1.74628 2.40706 2.49267 2.62130 2.96314 3.11757 3.33582 3.37948 3.50273 3.71154 3.84577 3.93757 4.09887 4.12715 4.26446 4.29787 4.42068 4.46724 4.59691 4.70008 4.79712 4.81092 4.86344 5.02385 5.11744 5.22616 5.38861 5.41502 5.44389 5.54795 5.76321 5.82852 5.94428 6.23006 6.31345 6.39248 6.41566 6.60654 6.78193 7.29328 7.41699 7.63154 8.96377 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.013777 B = 0.002665 C = 0.002352 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2031.958538 B =10505.698180 C =11902.680769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.942 5.942 2 C -0.021 4.021 3 Si 1.094 2.906 4 H -0.289 1.289 5 H -0.287 1.287 6 H -0.267 1.267 7 C -0.563 4.563 8 H 0.042 0.958 9 C 0.076 3.924 10 H 0.010 0.990 11 C -0.099 4.099 12 C 0.517 3.483 13 O -0.545 6.545 14 N -0.525 5.525 15 N -0.503 5.503 16 C 0.576 3.424 17 O -0.549 6.549 18 C 0.013 3.987 19 C -0.066 4.066 20 C -0.092 4.092 21 C 0.062 3.938 22 N -0.276 5.276 23 N -0.246 5.246 24 C -0.057 4.057 25 C -0.121 4.121 26 C -0.126 4.126 27 C -0.143 4.143 28 C -0.126 4.126 29 C -0.151 4.151 30 H 0.262 0.738 31 H 0.106 0.894 32 H 0.108 0.892 33 H 0.439 0.561 34 H 0.438 0.562 35 H 0.181 0.819 36 H 0.213 0.787 37 H 0.222 0.778 38 H 0.116 0.884 39 H 0.142 0.858 40 H 0.145 0.855 41 H 0.134 0.866 42 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.395 -14.826 11.510 22.493 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.220 4.220 3 Si 0.919 3.081 4 H -0.215 1.215 5 H -0.214 1.214 6 H -0.192 1.192 7 C -0.601 4.601 8 H 0.060 0.940 9 C 0.056 3.944 10 H 0.028 0.972 11 C -0.140 4.140 12 C 0.305 3.695 13 O -0.418 6.418 14 N -0.278 5.278 15 N -0.248 5.248 16 C 0.361 3.639 17 O -0.425 6.425 18 C -0.135 4.135 19 C -0.095 4.095 20 C -0.121 4.121 21 C -0.100 4.100 22 N -0.119 5.119 23 N -0.093 5.093 24 C -0.058 4.058 25 C -0.139 4.139 26 C -0.143 4.143 27 C -0.161 4.161 28 C -0.144 4.144 29 C -0.169 4.169 30 H 0.073 0.927 31 H 0.124 0.876 32 H 0.126 0.874 33 H 0.283 0.717 34 H 0.281 0.719 35 H 0.198 0.802 36 H 0.230 0.770 37 H 0.239 0.761 38 H 0.134 0.866 39 H 0.160 0.840 40 H 0.163 0.837 41 H 0.152 0.848 42 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 11.225 -11.801 11.319 19.834 hybrid contribution 0.601 -2.301 0.293 2.396 sum 11.826 -14.102 11.612 21.761 Atomic orbital electron populations 1.70815 1.07895 1.30585 1.48670 1.26648 0.96557 1.05439 0.93364 0.83230 0.74466 0.73211 0.77151 1.21500 1.21371 1.19212 1.21829 0.93642 0.92105 1.52491 0.93968 1.17695 0.94417 0.92942 0.89321 0.97196 1.21581 1.02655 1.00607 0.89187 1.21527 0.76875 0.82793 0.88259 1.90787 1.52776 1.25404 1.72833 1.45251 1.52003 1.27893 1.02624 1.44829 1.48699 1.26936 1.04333 1.17892 0.78430 0.83165 0.84460 1.90786 1.54377 1.24957 1.72413 1.22361 1.00255 0.95919 0.95007 1.22716 0.92618 1.00043 0.94165 1.23060 0.97749 0.96254 0.95004 1.25352 0.90282 0.92005 1.02409 1.73116 1.13204 1.27606 0.97956 1.73238 1.16828 1.11962 1.07229 1.20566 0.93550 0.93759 0.97895 1.21029 0.99682 0.99931 0.93217 1.21407 0.96770 0.99396 0.96776 1.21311 0.93205 1.02070 0.99529 1.21296 1.00361 0.99884 0.92829 1.21135 0.95610 1.02073 0.98070 0.92742 0.87617 0.87365 0.71747 0.71942 0.80158 0.77002 0.76145 0.86601 0.84031 0.83677 0.84764 0.88465 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.56 13.56 21.44 0.29 -59.27 16 2 C -0.02 -1.24 5.45 84.65 0.46 -0.78 16 3 Si 1.09 54.04 29.91 68.60 2.05 56.10 16 4 H -0.29 -14.42 7.11 99.48 0.71 -13.72 16 5 H -0.29 -13.98 7.11 99.48 0.71 -13.27 16 6 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 7 C -0.56 -30.93 6.35 25.60 0.16 -30.77 16 8 H 0.04 2.29 7.82 -2.91 -0.02 2.27 16 9 C 0.08 3.64 1.23 -12.28 -0.02 3.63 16 10 H 0.01 0.55 6.59 -2.39 -0.02 0.54 16 11 C -0.10 -3.71 4.95 29.85 0.15 -3.56 16 12 C 0.52 20.81 7.70 87.66 0.68 21.48 16 13 O -0.54 -27.81 14.86 -3.04 -0.05 -27.86 16 14 N -0.52 -17.00 6.26 -173.53 -1.09 -18.08 16 15 N -0.50 -16.16 6.25 -175.40 -1.10 -17.26 16 16 C 0.58 16.23 7.93 86.88 0.69 16.92 16 17 O -0.55 -16.22 16.23 -3.77 -0.06 -16.28 16 18 C 0.01 0.30 6.83 41.99 0.29 0.58 16 19 C -0.07 -0.93 9.73 22.77 0.22 -0.71 16 20 C -0.09 -0.62 10.20 22.49 0.23 -0.39 16 21 C 0.06 0.67 11.31 84.72 0.96 1.63 16 22 N -0.28 -6.21 11.51 -57.15 -0.66 -6.87 16 23 N -0.25 -6.63 10.75 -48.49 -0.52 -7.15 16 24 C -0.06 -2.49 4.53 -19.87 -0.09 -2.58 16 25 C -0.12 -4.66 8.90 22.27 0.20 -4.47 16 26 C -0.13 -4.04 10.05 22.27 0.22 -3.82 16 27 C -0.14 -4.37 10.05 22.27 0.22 -4.14 16 28 C -0.13 -4.29 10.05 22.27 0.22 -4.07 16 29 C -0.15 -6.24 9.18 22.27 0.20 -6.03 16 30 H 0.26 16.49 6.24 -92.70 -0.58 15.91 16 31 H 0.11 3.27 8.14 -2.39 -0.02 3.25 16 32 H 0.11 3.60 7.97 -2.39 -0.02 3.58 16 33 H 0.44 11.72 8.00 -213.32 -1.71 10.02 16 34 H 0.44 15.25 7.36 -213.32 -1.57 13.68 16 35 H 0.18 1.88 7.72 -2.91 -0.02 1.86 16 36 H 0.21 -0.78 8.06 -2.91 -0.02 -0.80 16 37 H 0.22 0.32 8.06 -2.91 -0.02 0.30 16 38 H 0.12 4.38 7.85 -2.91 -0.02 4.35 16 39 H 0.14 3.57 8.06 -2.91 -0.02 3.55 16 40 H 0.15 3.32 8.06 -2.91 -0.02 3.30 16 41 H 0.13 3.78 8.06 -2.91 -0.02 3.76 16 42 H 0.10 4.16 7.95 -2.91 -0.02 4.14 16 Total: -1.00 -84.02 371.00 1.68 -82.34 By element: Atomic # 1 Polarization: 33.40 SS G_CDS: -2.00 Total: 31.41 kcal Atomic # 6 Polarization: -21.87 SS G_CDS: 4.80 Total: -17.07 kcal Atomic # 7 Polarization: -105.56 SS G_CDS: -3.07 Total: -108.63 kcal Atomic # 8 Polarization: -44.03 SS G_CDS: -0.11 Total: -44.14 kcal Atomic # 14 Polarization: 54.04 SS G_CDS: 2.05 Total: 56.10 kcal Total: -84.02 1.68 -82.34 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001462491164.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.828 kcal (2) G-P(sol) polarization free energy of solvation -84.015 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.678 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.337 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.491 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds