Wall clock time and date at job start Wed Apr 1 2020 00:21:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.37976 * 120.07437 * 2 1 4 4 C 1.38334 * 120.14360 * 179.72064 * 3 2 1 5 5 C 1.38383 * 120.29779 * 0.51205 * 4 3 2 6 6 S 1.76194 * 119.93196 * 179.76341 * 5 4 3 7 7 O 1.42102 * 106.40423 * 156.18102 * 6 5 4 8 8 O 1.42098 * 106.40110 * 23.26604 * 6 5 4 9 9 N 1.65593 * 107.21978 * 269.72218 * 6 5 4 10 10 C 1.46505 * 119.99779 * 89.99829 * 9 6 5 11 11 C 1.46498 * 120.00154 * 269.99922 * 9 6 5 12 12 C 1.37941 * 120.14025 * 359.48356 * 5 4 3 13 13 C 1.39562 * 120.07314 * 179.97438 * 2 1 3 14 14 C 1.47846 * 120.14547 * 359.97438 * 13 2 1 15 15 O 1.21553 * 119.99834 * 353.77533 * 14 13 2 16 16 N 1.34772 * 119.99976 * 173.76767 * 14 13 2 17 17 C 1.46500 * 119.99694 * 180.02562 * 16 14 13 18 18 H 1.08995 * 109.47331 * 35.00511 * 17 16 14 19 19 C 1.52998 * 109.47216 * 275.00147 * 17 16 14 20 20 C 1.50709 * 109.46813 * 155.00219 * 17 16 14 21 21 H 1.07999 * 119.99962 * 359.97438 * 20 17 16 22 22 C 1.37874 * 119.99915 * 180.02562 * 20 17 16 23 23 N 1.31512 * 119.99952 * 0.02562 * 22 20 17 24 24 Si 1.86799 * 119.99904 * 180.02562 * 22 20 17 25 25 H 1.48498 * 109.47274 * 359.97438 * 24 22 20 26 26 H 1.48496 * 109.47211 * 120.00156 * 24 22 20 27 27 H 1.48502 * 109.47062 * 239.99741 * 24 22 20 28 28 H 1.09000 * 109.47001 * 263.42973 * 1 2 3 29 29 H 1.08994 * 109.47213 * 23.43220 * 1 2 3 30 30 H 1.09008 * 109.46939 * 143.43317 * 1 2 3 31 31 H 1.07999 * 119.92946 * 359.97438 * 3 2 1 32 32 H 1.08011 * 119.85508 * 180.27575 * 4 3 2 33 33 H 1.08997 * 109.47241 * 270.00001 * 10 9 6 34 34 H 1.09008 * 109.46906 * 150.00290 * 10 9 6 35 35 H 1.09000 * 109.46986 * 30.00543 * 10 9 6 36 36 H 1.09005 * 109.47073 * 179.97438 * 11 9 6 37 37 H 1.08990 * 109.47322 * 300.00077 * 11 9 6 38 38 H 1.09004 * 109.47130 * 60.00088 * 11 9 6 39 39 H 1.08000 * 120.07230 * 180.22876 * 12 5 4 40 40 H 0.97000 * 120.00341 * 0.02562 * 16 14 13 41 41 H 1.08992 * 109.47320 * 60.00066 * 19 17 16 42 42 H 1.09004 * 109.46737 * 180.02562 * 19 17 16 43 43 H 1.09003 * 109.47311 * 299.99738 * 19 17 16 44 44 H 0.97011 * 120.00154 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1940 0.0000 4 6 3.5818 1.1957 0.0058 5 6 4.2814 0.0017 0.0010 6 16 6.0433 0.0152 0.0022 7 8 6.4537 -1.2312 0.5475 8 8 6.4346 1.2681 0.5464 9 7 6.5345 0.0182 -1.5791 10 6 6.7422 1.2883 -2.2792 11 6 6.7616 -1.2491 -2.2781 12 6 3.6023 -1.1989 0.0011 13 6 2.2064 -1.2078 0.0005 14 6 1.4720 -2.4910 0.0017 15 8 0.2619 -2.4986 0.1163 16 7 2.1443 -3.6522 -0.1245 17 6 1.4165 -4.9236 -0.1239 18 1 0.4543 -4.7918 -0.6186 19 6 1.1901 -5.3810 1.3184 20 6 2.2215 -5.9635 -0.8602 21 1 3.1791 -5.7031 -1.2862 22 6 1.7349 -7.2469 -0.9907 23 7 0.5681 -7.5635 -0.4732 24 14 2.7329 -8.5359 -1.9026 25 1 3.9996 -7.9303 -2.3864 26 1 3.0409 -9.6631 -0.9863 27 1 1.9514 -9.0390 -3.0608 28 1 -0.3633 -0.1176 1.0209 29 1 -0.3633 0.9429 -0.4086 30 1 -0.3633 -0.8254 -0.6123 31 1 1.6585 2.1293 -0.0004 32 1 4.1183 2.1331 0.0103 33 1 5.8123 1.5957 -2.7577 34 1 7.5164 1.1635 -3.0363 35 1 7.0523 2.0506 -1.5645 36 1 7.0775 -1.0479 -3.3018 37 1 7.5376 -1.8145 -1.7624 38 1 5.8379 -1.8278 -2.2905 39 1 4.1494 -2.1301 0.0011 40 1 3.1100 -3.6462 -0.2157 41 1 0.6079 -4.6290 1.8509 42 1 0.6490 -6.3273 1.3188 43 1 2.1524 -5.5130 1.8131 44 1 0.2258 -8.4666 -0.5647 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001465026478.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:21:27 Heat of formation + Delta-G solvation = -78.572319 kcal Electronic energy + Delta-G solvation = -27984.727587 eV Core-core repulsion = 24029.444859 eV Total energy + Delta-G solvation = -3955.282728 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.16627 -38.09651 -37.45686 -36.42307 -36.00206 -35.03697 -33.07982 -32.46476 -31.35847 -28.83881 -28.37514 -27.27223 -25.29159 -24.95430 -23.97660 -22.21183 -21.29794 -19.72957 -19.19121 -18.40923 -17.61260 -16.78783 -16.50367 -15.90498 -15.65266 -15.41687 -15.10656 -14.77827 -14.64034 -14.48330 -14.12576 -14.07728 -13.47804 -13.28018 -13.09307 -12.95570 -12.53152 -12.46770 -12.32119 -12.26588 -12.20928 -12.08758 -11.89918 -11.80931 -11.79012 -11.71164 -11.09538 -10.99050 -10.96043 -10.78090 -10.30827 -10.26827 -9.43698 -9.23609 -9.17691 -9.06315 -9.02475 -8.59606 -7.98687 -6.15826 -4.25218 0.14240 0.61472 0.90872 2.64112 3.01720 3.22233 3.30124 3.32741 3.52842 3.86816 3.89549 4.08975 4.33743 4.48030 4.55702 4.65602 4.82014 4.98660 5.07639 5.15922 5.16911 5.31391 5.32558 5.39037 5.43658 5.51613 5.56672 5.63411 5.75399 5.78936 5.85988 5.93613 6.18590 6.20034 6.47469 6.66626 6.80138 6.93185 7.10243 7.36308 7.49767 7.64924 7.86058 8.10089 8.54940 8.71366 8.97922 9.42145 10.90212 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.011376 B = 0.003747 C = 0.003037 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2460.761541 B = 7471.544729 C = 9218.018699 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.028 3.972 3 C -0.153 4.153 4 C -0.003 4.003 5 C -0.695 4.695 6 S 2.697 3.303 7 O -0.949 6.949 8 O -0.958 6.958 9 N -1.006 6.006 10 C 0.082 3.918 11 C 0.087 3.913 12 C 0.014 3.986 13 C -0.146 4.146 14 C 0.542 3.458 15 O -0.542 6.542 16 N -0.700 5.700 17 C 0.264 3.736 18 H 0.051 0.949 19 C -0.148 4.148 20 C -0.535 4.535 21 H 0.062 0.938 22 C 0.067 3.933 23 N -0.883 5.883 24 Si 0.902 3.098 25 H -0.272 1.272 26 H -0.282 1.282 27 H -0.283 1.283 28 H 0.083 0.917 29 H 0.058 0.942 30 H 0.106 0.894 31 H 0.137 0.863 32 H 0.140 0.860 33 H 0.055 0.945 34 H 0.077 0.923 35 H 0.083 0.917 36 H 0.082 0.918 37 H 0.071 0.929 38 H 0.064 0.936 39 H 0.144 0.856 40 H 0.388 0.612 41 H 0.015 0.985 42 H 0.092 0.908 43 H 0.028 0.972 44 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.804 18.944 -3.758 21.659 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.027 3.973 3 C -0.172 4.172 4 C -0.023 4.023 5 C -0.782 4.782 6 S 2.787 3.213 7 O -0.939 6.939 8 O -0.948 6.948 9 N -0.846 5.846 10 C -0.063 4.063 11 C -0.058 4.058 12 C -0.006 4.006 13 C -0.150 4.150 14 C 0.328 3.672 15 O -0.422 6.422 16 N -0.348 5.348 17 C 0.163 3.837 18 H 0.069 0.931 19 C -0.207 4.207 20 C -0.573 4.573 21 H 0.081 0.919 22 C -0.136 4.136 23 N -0.520 5.520 24 Si 0.730 3.270 25 H -0.197 1.197 26 H -0.208 1.208 27 H -0.209 1.209 28 H 0.101 0.899 29 H 0.077 0.923 30 H 0.124 0.876 31 H 0.154 0.846 32 H 0.158 0.842 33 H 0.074 0.926 34 H 0.096 0.904 35 H 0.101 0.899 36 H 0.101 0.899 37 H 0.089 0.911 38 H 0.083 0.917 39 H 0.161 0.839 40 H 0.222 0.778 41 H 0.034 0.966 42 H 0.110 0.890 43 H 0.047 0.953 44 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 9.361 18.707 -2.974 21.129 hybrid contribution 0.278 -0.751 -0.831 1.154 sum 9.639 17.956 -3.805 20.732 Atomic orbital electron populations 1.21243 0.89352 1.03472 1.04464 1.20447 0.97436 0.91531 0.87908 1.21166 0.94008 0.97908 1.04085 1.20974 0.94675 0.96318 0.90300 1.30816 1.26958 0.99320 1.21090 1.01902 0.73667 0.73559 0.72186 1.93608 1.80752 1.43866 1.75671 1.93556 1.81515 1.43854 1.75874 1.57313 1.82740 1.12423 1.32090 1.21666 1.02000 0.84265 0.98353 1.21630 1.02290 0.83625 0.98305 1.21109 0.93831 0.96813 0.88824 1.20323 0.93412 0.94900 1.06384 1.18076 0.87345 0.83570 0.78246 1.90679 1.13453 1.87022 1.51083 1.46563 1.10643 1.07126 1.70446 1.18824 0.93252 0.77651 0.93994 0.93076 1.22089 0.99389 1.02181 0.97017 1.21239 1.05382 0.94806 1.35883 0.91936 1.24879 0.95055 0.98303 0.95395 1.69911 1.17885 1.20076 1.44144 0.86381 0.80013 0.81228 0.79414 1.19664 1.20816 1.20893 0.89858 0.92274 0.87567 0.84558 0.84177 0.92594 0.90408 0.89867 0.89947 0.91079 0.91721 0.83868 0.77819 0.96576 0.88989 0.95304 0.92586 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.75 8.73 36.01 0.31 -1.43 16 2 C 0.03 0.40 5.91 -104.22 -0.62 -0.22 16 3 C -0.15 -1.72 9.66 -39.64 -0.38 -2.10 16 4 C 0.00 -0.03 9.52 -39.49 -0.38 -0.41 16 5 C -0.69 -8.66 5.97 -39.64 -0.24 -8.89 16 6 S 2.70 32.08 5.70 -107.50 -0.61 31.47 16 7 O -0.95 -14.04 16.43 -57.17 -0.94 -14.98 16 8 O -0.96 -12.66 15.87 -57.17 -0.91 -13.57 16 9 N -1.01 -9.06 3.58 -129.20 -0.46 -9.52 16 10 C 0.08 0.53 10.63 59.85 0.64 1.17 16 11 C 0.09 0.69 10.30 59.85 0.62 1.31 16 12 C 0.01 0.21 9.00 -39.18 -0.35 -0.15 16 13 C -0.15 -2.37 5.87 -104.96 -0.62 -2.99 16 14 C 0.54 10.87 7.67 -12.33 -0.09 10.78 16 15 O -0.54 -12.21 13.01 5.32 0.07 -12.14 16 16 N -0.70 -14.68 5.02 -55.88 -0.28 -14.97 16 17 C 0.26 6.64 2.56 -69.08 -0.18 6.47 16 18 H 0.05 1.46 7.58 -51.93 -0.39 1.07 16 19 C -0.15 -3.68 9.26 37.16 0.34 -3.34 16 20 C -0.53 -13.99 8.73 -34.44 -0.30 -14.29 16 21 H 0.06 1.56 7.74 -52.49 -0.41 1.16 16 22 C 0.07 1.78 5.30 -17.82 -0.09 1.68 16 23 N -0.88 -24.54 11.32 55.43 0.63 -23.91 16 24 Si 0.90 20.40 29.54 -169.99 -5.02 15.38 16 25 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 26 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 27 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 28 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 29 H 0.06 0.61 8.04 -51.93 -0.42 0.19 16 30 H 0.11 1.73 5.86 -51.92 -0.30 1.42 16 31 H 0.14 1.11 8.06 -52.49 -0.42 0.69 16 32 H 0.14 1.18 7.60 -52.48 -0.40 0.79 16 33 H 0.06 0.30 8.14 -51.93 -0.42 -0.13 16 34 H 0.08 0.35 7.92 -51.92 -0.41 -0.06 16 35 H 0.08 0.54 7.02 -51.93 -0.36 0.18 16 36 H 0.08 0.46 7.79 -51.93 -0.40 0.06 16 37 H 0.07 0.58 8.01 -51.93 -0.42 0.16 16 38 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 39 H 0.14 1.96 6.01 -52.49 -0.32 1.64 16 40 H 0.39 7.17 6.61 -40.82 -0.27 6.90 16 41 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 42 H 0.09 2.47 6.07 -51.93 -0.32 2.15 16 43 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 44 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 LS Contribution 374.22 15.07 5.64 5.64 Total: -1.00 -33.41 374.22 -9.31 -42.72 By element: Atomic # 1 Polarization: 12.37 SS G_CDS: -6.09 Total: 6.28 kcal Atomic # 6 Polarization: -11.07 SS G_CDS: -1.34 Total: -12.40 kcal Atomic # 7 Polarization: -48.28 SS G_CDS: -0.12 Total: -48.40 kcal Atomic # 8 Polarization: -38.91 SS G_CDS: -1.78 Total: -40.69 kcal Atomic # 14 Polarization: 20.40 SS G_CDS: -5.02 Total: 15.38 kcal Atomic # 16 Polarization: 32.08 SS G_CDS: -0.61 Total: 31.47 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -33.41 -9.31 -42.72 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001465026478.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.855 kcal (2) G-P(sol) polarization free energy of solvation -33.406 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.260 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.312 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.718 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.572 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds