Wall clock time and date at job start Wed Apr 1 2020 00:21:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.37979 * 120.07594 * 2 1 4 4 C 1.38334 * 120.14553 * 179.97438 * 3 2 1 5 5 C 1.38380 * 120.29500 * 0.02562 * 4 3 2 6 6 S 1.76200 * 119.93017 * 180.02562 * 5 4 3 7 7 O 1.42097 * 106.40018 * 203.53981 * 6 5 4 8 8 O 1.42102 * 106.40026 * 336.46063 * 6 5 4 9 9 N 1.65597 * 107.21655 * 89.99807 * 6 5 4 10 10 C 1.46503 * 119.99792 * 90.00244 * 9 6 5 11 11 C 1.46499 * 120.00324 * 269.99960 * 9 6 5 12 12 C 1.37940 * 120.14223 * 359.74477 * 5 4 3 13 13 C 1.39557 * 120.07063 * 179.97438 * 2 1 3 14 14 C 1.47846 * 120.14675 * 0.02562 * 13 2 1 15 15 O 1.21551 * 119.99932 * 354.01342 * 14 13 2 16 16 N 1.34772 * 119.99993 * 174.01621 * 14 13 2 17 17 C 1.46499 * 120.00143 * 179.97438 * 16 14 13 18 18 H 1.09003 * 109.46995 * 325.00248 * 17 16 14 19 19 C 1.53001 * 109.47130 * 84.99693 * 17 16 14 20 20 C 1.50703 * 109.47607 * 205.00127 * 17 16 14 21 21 H 1.07997 * 119.99387 * 359.97438 * 20 17 16 22 22 C 1.37871 * 120.00098 * 180.02562 * 20 17 16 23 23 N 1.31516 * 120.00091 * 0.02562 * 22 20 17 24 24 Si 1.86807 * 119.99844 * 179.97438 * 22 20 17 25 25 H 1.48504 * 109.46753 * 60.00026 * 24 22 20 26 26 H 1.48496 * 109.46912 * 179.97438 * 24 22 20 27 27 H 1.48500 * 109.47084 * 300.00313 * 24 22 20 28 28 H 1.09000 * 109.47130 * 263.43630 * 1 2 3 29 29 H 1.09004 * 109.47112 * 23.43271 * 1 2 3 30 30 H 1.09001 * 109.47101 * 143.43364 * 1 2 3 31 31 H 1.07999 * 119.92509 * 359.96743 * 3 2 1 32 32 H 1.08004 * 119.85126 * 180.02562 * 4 3 2 33 33 H 1.09004 * 109.47031 * 89.99881 * 10 9 6 34 34 H 1.09001 * 109.47301 * 210.00104 * 10 9 6 35 35 H 1.08999 * 109.47084 * 329.99931 * 10 9 6 36 36 H 1.09000 * 109.47013 * 0.02562 * 11 9 6 37 37 H 1.08999 * 109.46839 * 120.00538 * 11 9 6 38 38 H 1.08998 * 109.46935 * 239.99990 * 11 9 6 39 39 H 1.07998 * 120.07308 * 180.27615 * 12 5 4 40 40 H 0.97001 * 120.00016 * 0.02562 * 16 14 13 41 41 H 1.08995 * 109.47210 * 179.97438 * 19 17 16 42 42 H 1.09003 * 109.46728 * 60.00392 * 19 17 16 43 43 H 1.08998 * 109.47198 * 300.00567 * 19 17 16 44 44 H 0.97002 * 119.99888 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1985 1.1940 0.0000 4 6 3.5818 1.1957 0.0005 5 6 4.2813 0.0017 0.0005 6 16 6.0433 0.0151 0.0019 7 8 6.4544 -1.2313 -0.5428 8 8 6.4354 1.2681 -0.5417 9 7 6.5322 0.0181 1.5841 10 6 6.7581 -1.2493 2.2833 11 6 6.7389 1.2881 2.2845 12 6 3.6022 -1.1989 0.0053 13 6 2.2063 -1.2077 0.0005 14 6 1.4719 -2.4909 0.0005 15 8 0.2614 -2.4983 0.1099 16 7 2.1447 -3.6524 -0.1206 17 6 1.4171 -4.9239 -0.1200 18 1 0.5633 -4.8536 0.5539 19 6 0.9252 -5.2307 -1.5360 20 6 2.3335 -6.0270 0.3434 21 1 3.3557 -5.8032 0.6104 22 6 1.8670 -7.3218 0.4256 23 7 0.6226 -7.5944 0.0990 24 14 3.0032 -8.6891 0.9994 25 1 3.4806 -8.3918 2.3738 26 1 2.2655 -9.9779 1.0000 27 1 4.1663 -8.7843 0.0811 28 1 -0.3633 -0.1175 1.0209 29 1 -0.3633 0.9429 -0.4087 30 1 -0.3633 -0.8254 -0.6122 31 1 1.6585 2.1293 -0.0005 32 1 4.1183 2.1331 0.0010 33 1 7.7960 -1.5560 2.1533 34 1 6.5474 -1.1210 3.3451 35 1 6.0991 -2.0137 1.8719 36 1 6.5230 2.1153 1.6083 37 1 6.0732 1.3403 3.1460 38 1 7.7737 1.3535 2.6205 39 1 4.1493 -2.1301 0.0098 40 1 3.1108 -3.6465 -0.2074 41 1 0.3843 -6.1769 -1.5357 42 1 1.7791 -5.3009 -2.2099 43 1 0.2625 -4.4329 -1.8712 44 1 0.2944 -8.5054 0.1571 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001465026479.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:21:32 Heat of formation + Delta-G solvation = -102.438176 kcal Electronic energy + Delta-G solvation = -27976.983659 eV Core-core repulsion = 24020.666029 eV Total energy + Delta-G solvation = -3956.317629 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.47144 -39.48401 -38.47955 -37.14353 -36.96032 -36.86053 -34.63990 -33.82499 -32.69711 -30.57664 -28.96211 -28.39155 -27.36230 -25.58420 -25.22767 -23.48689 -22.68650 -21.40101 -20.35613 -19.49762 -18.55483 -18.29121 -17.73684 -17.13021 -17.08418 -16.66172 -16.35007 -16.11785 -15.92045 -15.50298 -15.32217 -15.09690 -14.72842 -14.58275 -14.34079 -14.07144 -13.74037 -13.51017 -13.40015 -13.36799 -13.26449 -13.22857 -13.22145 -12.99084 -12.89461 -12.83267 -12.66212 -12.64417 -12.53049 -12.29627 -12.14924 -11.95042 -11.15120 -10.69484 -10.54003 -10.35850 -10.22120 -10.04181 -9.78222 -8.19198 -6.36902 -0.77943 -0.42969 -0.16074 1.44794 1.46930 1.54661 1.65145 1.95872 2.28736 2.48487 2.52081 2.68910 3.11323 3.13460 3.57259 3.63538 3.73041 3.84070 4.01519 4.20284 4.35868 4.48666 4.55636 4.60578 4.66871 4.73369 4.76397 4.78636 4.82105 4.88180 4.93089 4.96790 4.99748 5.04933 5.06734 5.16202 5.33520 5.45464 5.53511 5.56502 5.64098 5.67642 5.84927 6.05981 6.68446 6.82962 7.26255 7.41612 8.86954 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.011357 B = 0.003756 C = 0.003024 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2464.800397 B = 7452.053002 C = 9255.613612 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.017 3.983 3 C -0.139 4.139 4 C 0.007 3.993 5 C -0.695 4.695 6 S 2.709 3.291 7 O -0.983 6.983 8 O -0.969 6.969 9 N -1.001 6.001 10 C 0.080 3.920 11 C 0.074 3.926 12 C 0.008 3.992 13 C -0.171 4.171 14 C 0.538 3.462 15 O -0.575 6.575 16 N -0.703 5.703 17 C 0.272 3.728 18 H 0.006 0.994 19 C -0.135 4.135 20 C -0.551 4.551 21 H 0.072 0.928 22 C 0.018 3.982 23 N -0.916 5.916 24 Si 0.972 3.028 25 H -0.268 1.268 26 H -0.285 1.285 27 H -0.266 1.266 28 H 0.077 0.923 29 H 0.095 0.905 30 H 0.071 0.929 31 H 0.178 0.822 32 H 0.175 0.825 33 H 0.069 0.931 34 H 0.098 0.902 35 H 0.065 0.935 36 H 0.089 0.911 37 H 0.081 0.919 38 H 0.081 0.919 39 H 0.141 0.859 40 H 0.400 0.600 41 H 0.071 0.929 42 H 0.036 0.964 43 H 0.014 0.986 44 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.376 21.469 5.053 24.817 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.016 3.984 3 C -0.158 4.158 4 C -0.012 4.012 5 C -0.782 4.782 6 S 2.799 3.201 7 O -0.973 6.973 8 O -0.959 6.959 9 N -0.842 5.842 10 C -0.065 4.065 11 C -0.070 4.070 12 C -0.012 4.012 13 C -0.175 4.175 14 C 0.327 3.673 15 O -0.457 6.457 16 N -0.351 5.351 17 C 0.169 3.831 18 H 0.024 0.976 19 C -0.194 4.194 20 C -0.589 4.589 21 H 0.090 0.910 22 C -0.183 4.183 23 N -0.554 5.554 24 Si 0.796 3.204 25 H -0.193 1.193 26 H -0.210 1.210 27 H -0.191 1.191 28 H 0.096 0.904 29 H 0.114 0.886 30 H 0.089 0.911 31 H 0.195 0.805 32 H 0.193 0.807 33 H 0.087 0.913 34 H 0.117 0.883 35 H 0.084 0.916 36 H 0.107 0.893 37 H 0.099 0.901 38 H 0.100 0.900 39 H 0.158 0.842 40 H 0.236 0.764 41 H 0.089 0.911 42 H 0.055 0.945 43 H 0.033 0.967 44 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 10.944 21.260 4.420 24.317 hybrid contribution -0.245 -1.389 0.372 1.458 sum 10.700 19.871 4.792 23.072 Atomic orbital electron populations 1.21157 0.89363 1.03979 1.03649 1.20644 0.97686 0.91852 0.88218 1.21559 0.94171 0.98127 1.01906 1.21476 0.94873 0.96978 0.87886 1.30980 1.27341 0.99208 1.20624 1.01414 0.73253 0.72530 0.72872 1.93568 1.81233 1.45381 1.77106 1.93540 1.81559 1.44039 1.76784 1.57152 1.81956 1.13816 1.31230 1.21746 1.02515 0.82863 0.99380 1.21894 1.03875 0.82664 0.98566 1.21085 0.93081 0.97787 0.89271 1.20021 0.94045 0.93464 1.09934 1.18703 0.87212 0.84596 0.76830 1.90662 1.14992 1.87651 1.52395 1.46336 1.11040 1.06360 1.71381 1.18409 0.91716 0.79549 0.93425 0.97561 1.21918 0.99089 1.00734 0.97620 1.21492 0.98357 0.92741 1.46332 0.91010 1.25767 0.96674 1.01032 0.94781 1.70034 1.16435 1.21001 1.47882 0.85405 0.78530 0.77393 0.79082 1.19330 1.20995 1.19101 0.90405 0.88616 0.91079 0.80467 0.80734 0.91269 0.88326 0.91577 0.89272 0.90060 0.90032 0.84153 0.76440 0.91080 0.94461 0.96735 0.92444 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.30 8.74 71.24 0.62 -2.67 16 2 C 0.02 0.46 5.91 -19.61 -0.12 0.35 16 3 C -0.14 -2.58 9.66 22.23 0.21 -2.36 16 4 C 0.01 0.13 9.52 22.33 0.21 0.34 16 5 C -0.70 -15.82 5.97 22.23 0.13 -15.68 16 6 S 2.71 59.63 5.64 -56.49 -0.32 59.31 16 7 O -0.98 -28.57 16.35 -128.00 -2.09 -30.66 16 8 O -0.97 -23.18 15.84 -128.00 -2.03 -25.21 16 9 N -1.00 -15.76 3.58 -562.68 -2.02 -17.78 16 10 C 0.08 1.15 10.33 127.77 1.32 2.47 16 11 C 0.07 0.72 10.67 127.77 1.36 2.08 16 12 C 0.01 0.22 9.00 22.53 0.20 0.42 16 13 C -0.17 -5.54 5.87 -20.09 -0.12 -5.66 16 14 C 0.54 22.53 7.67 86.79 0.67 23.20 16 15 O -0.57 -27.38 13.00 -3.88 -0.05 -27.43 16 16 N -0.70 -30.78 5.02 -448.98 -2.25 -33.03 16 17 C 0.27 14.35 2.56 44.25 0.11 14.46 16 18 H 0.01 0.40 7.58 -2.39 -0.02 0.38 16 19 C -0.13 -6.98 9.26 71.98 0.67 -6.32 16 20 C -0.55 -29.53 8.73 25.60 0.22 -29.31 16 21 H 0.07 3.61 7.74 -2.91 -0.02 3.58 16 22 C 0.02 0.96 5.30 84.65 0.45 1.41 16 23 N -0.92 -52.42 11.32 21.45 0.24 -52.18 16 24 Si 0.97 42.09 29.54 68.60 2.03 44.11 16 25 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 26 H -0.28 -12.18 7.11 99.48 0.71 -11.48 16 27 H -0.27 -11.10 7.11 99.48 0.71 -10.39 16 28 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 29 H 0.10 1.74 8.04 -2.39 -0.02 1.72 16 30 H 0.07 2.41 5.85 -2.39 -0.01 2.40 16 31 H 0.18 1.84 8.06 -2.91 -0.02 1.82 16 32 H 0.18 1.98 7.61 -2.91 -0.02 1.95 16 33 H 0.07 0.91 8.14 -2.38 -0.02 0.89 16 34 H 0.10 0.95 8.07 -2.39 -0.02 0.93 16 35 H 0.07 1.10 7.79 -2.39 -0.02 1.08 16 36 H 0.09 0.81 6.91 -2.39 -0.02 0.79 16 37 H 0.08 0.51 8.14 -2.39 -0.02 0.49 16 38 H 0.08 0.58 8.14 -2.39 -0.02 0.56 16 39 H 0.14 3.89 6.01 -2.91 -0.02 3.87 16 40 H 0.40 15.42 6.61 -92.71 -0.61 14.80 16 41 H 0.07 3.98 6.07 -2.39 -0.01 3.96 16 42 H 0.04 1.80 8.14 -2.39 -0.02 1.78 16 43 H 0.01 0.70 8.14 -2.39 -0.02 0.68 16 44 H 0.27 14.44 8.31 -92.71 -0.77 13.67 16 Total: -1.00 -74.98 374.29 -0.12 -75.10 By element: Atomic # 1 Polarization: 24.63 SS G_CDS: 0.42 Total: 25.05 kcal Atomic # 6 Polarization: -23.23 SS G_CDS: 5.95 Total: -17.28 kcal Atomic # 7 Polarization: -98.96 SS G_CDS: -4.03 Total: -102.99 kcal Atomic # 8 Polarization: -79.13 SS G_CDS: -4.17 Total: -83.30 kcal Atomic # 14 Polarization: 42.09 SS G_CDS: 2.03 Total: 44.11 kcal Atomic # 16 Polarization: 59.63 SS G_CDS: -0.32 Total: 59.31 kcal Total: -74.98 -0.12 -75.10 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001465026479.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.335 kcal (2) G-P(sol) polarization free energy of solvation -74.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.315 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.123 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.103 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.438 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds