Wall clock time and date at job start Tue Mar 31 2020 23:32:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30746 * 1 3 3 Si 1.86800 * 119.99825 * 2 1 4 4 H 1.48504 * 109.46998 * 239.99732 * 3 2 1 5 5 H 1.48493 * 109.47203 * 0.02562 * 3 2 1 6 6 H 1.48507 * 109.46887 * 120.00055 * 3 2 1 7 7 C 1.40030 * 119.99972 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00033 * 179.97438 * 7 2 1 9 9 C 1.41332 * 120.00145 * 0.02562 * 7 2 1 10 10 C 1.40619 * 119.78751 * 179.97438 * 9 7 2 11 11 C 1.38316 * 119.13007 * 179.97438 * 10 9 7 12 12 C 1.38683 * 118.67004 * 0.02562 * 11 10 9 13 13 C 1.39655 * 119.50323 * 359.97438 * 12 11 10 14 14 N 1.39178 * 119.57890 * 180.02562 * 13 12 11 15 15 C 1.34774 * 119.99634 * 185.26409 * 14 13 12 16 16 O 1.21548 * 120.00393 * 354.84570 * 15 14 13 17 17 C 1.47803 * 119.99933 * 174.83875 * 15 14 13 18 18 C 1.39596 * 120.14764 * 180.02562 * 17 15 14 19 19 C 1.37955 * 119.84871 * 179.97438 * 18 17 15 20 20 C 1.38360 * 120.14739 * 0.02562 * 19 18 17 21 21 C 1.50704 * 119.84775 * 179.97438 * 20 19 18 22 22 N 1.46501 * 109.47152 * 90.00355 * 21 20 19 23 23 C 1.34768 * 119.99984 * 179.97438 * 22 21 20 24 24 N 1.34779 * 119.99987 * 179.97438 * 23 22 21 25 25 O 1.21584 * 120.00216 * 359.97438 * 23 22 21 26 26 C 1.38355 * 120.29897 * 0.23200 * 20 19 18 27 27 C 1.37956 * 120.14738 * 359.48732 * 26 20 19 28 28 N 1.31948 * 120.84126 * 0.27883 * 13 12 11 29 29 H 0.97001 * 120.00081 * 0.02562 * 1 2 3 30 30 H 1.07990 * 120.43085 * 0.02562 * 10 9 7 31 31 H 1.08002 * 120.65789 * 179.97438 * 11 10 9 32 32 H 1.08003 * 120.25078 * 180.02562 * 12 11 10 33 33 H 0.96996 * 120.00209 * 5.26998 * 14 13 12 34 34 H 1.08004 * 120.07368 * 359.95690 * 18 17 15 35 35 H 1.08000 * 119.92445 * 179.97438 * 19 18 17 36 36 H 1.09005 * 109.47002 * 209.99881 * 21 20 19 37 37 H 1.09001 * 109.47402 * 329.99742 * 21 20 19 38 38 H 0.96994 * 119.99597 * 359.97438 * 22 21 20 39 39 H 0.97002 * 119.99976 * 0.02562 * 24 23 22 40 40 H 0.96999 * 119.99851 * 179.97438 * 24 23 22 41 41 H 1.08005 * 119.93040 * 179.71923 * 26 20 19 42 42 H 1.07992 * 120.07807 * 180.25529 * 27 26 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2414 1.6178 0.0000 4 1 3.0952 1.6964 -1.2125 5 1 1.2764 2.7464 0.0006 6 1 3.0952 1.6964 1.2126 7 6 2.0076 -1.2127 0.0005 8 1 3.0876 -1.2127 0.0001 9 6 1.3010 -2.4367 0.0005 10 6 2.0086 -3.6518 0.0005 11 6 1.3033 -4.8417 0.0011 12 6 -0.0826 -4.7936 0.0011 13 6 -0.7279 -3.5551 0.0010 14 7 -2.1187 -3.5050 0.0016 15 6 -2.7503 -2.3192 -0.1055 16 8 -2.1087 -1.2869 -0.1082 17 6 -4.2232 -2.2741 -0.2199 18 6 -4.8806 -1.0477 -0.3315 19 6 -6.2555 -1.0128 -0.4384 20 6 -6.9829 -2.1898 -0.4347 21 6 -8.4847 -2.1438 -0.5513 22 7 -8.8667 -2.1981 -1.9646 23 6 -10.1684 -2.1705 -2.3123 24 7 -10.5198 -2.2199 -3.6125 25 8 -11.0259 -2.1010 -1.4531 26 6 -6.3381 -3.4084 -0.3190 27 6 -4.9632 -3.4579 -0.2172 28 7 -0.0357 -2.4317 -0.0045 29 1 -0.4850 0.8400 -0.0004 30 1 3.0885 -3.6559 0.0010 31 1 1.8218 -5.7892 0.0007 32 1 -0.6588 -5.7072 0.0019 33 1 -2.6335 -4.3234 0.0791 34 1 -4.3140 -0.1282 -0.3339 35 1 -6.7653 -0.0646 -0.5244 36 1 -8.9162 -2.9955 -0.0254 37 1 -8.8553 -1.2186 -0.1099 38 1 -8.1826 -2.2539 -2.6500 39 1 -9.8358 -2.2757 -4.2980 40 1 -11.4568 -2.2004 -3.8628 41 1 -6.9121 -4.3233 -0.3122 42 1 -4.4607 -4.4100 -0.1311 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001471517478.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:32:46 Heat of formation + Delta-G solvation = 19.844501 kcal Electronic energy + Delta-G solvation = -27685.515648 eV Core-core repulsion = 23631.349393 eV Total energy + Delta-G solvation = -4054.166255 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.132 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.33144 -39.79972 -38.67840 -37.32236 -35.04713 -34.24034 -33.94679 -33.10433 -31.42457 -31.03042 -30.32888 -29.03688 -26.65671 -25.52081 -23.08100 -22.71283 -21.66809 -21.40589 -21.08652 -19.52420 -18.69281 -18.14778 -17.71808 -16.90865 -16.34124 -15.75903 -15.36734 -15.14189 -15.04875 -14.72524 -14.53827 -14.43491 -14.35620 -14.11668 -13.66418 -13.55517 -13.15308 -12.87278 -12.78683 -12.63139 -12.01043 -11.92506 -11.58733 -11.16238 -11.12496 -10.99441 -10.69682 -10.67318 -10.49824 -10.05298 -9.98604 -9.74806 -9.35685 -9.15198 -9.07670 -9.06599 -8.86814 -8.00520 -7.27519 -7.01520 -6.17613 -4.43254 0.77640 1.28962 2.58843 2.80033 2.90616 3.05863 3.14710 3.16589 3.24483 3.43196 3.71684 4.03909 4.17122 4.24167 4.37938 4.64173 4.83052 4.90371 5.04260 5.17064 5.26742 5.37778 5.54922 5.73022 5.90582 6.00045 6.07075 6.08714 6.19056 6.34081 6.36859 6.37791 6.45680 6.56799 6.64560 6.75695 6.81346 6.82852 7.19948 7.51084 7.57750 7.61426 7.77606 8.00536 8.15573 8.29547 8.40638 8.69733 9.00729 9.15876 10.19823 10.44764 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.016021 B = 0.002376 C = 0.002133 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1747.270548 B =11783.810135 C =13120.876668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.657 5.657 2 C 0.058 3.942 3 Si 0.897 3.103 4 H -0.267 1.267 5 H -0.279 1.279 6 H -0.267 1.267 7 C -0.424 4.424 8 H 0.082 0.918 9 C 0.270 3.730 10 C -0.304 4.304 11 C -0.036 4.036 12 C -0.356 4.356 13 C 0.371 3.629 14 N -0.660 5.660 15 C 0.508 3.492 16 O -0.399 6.399 17 C -0.103 4.103 18 C -0.067 4.067 19 C -0.106 4.106 20 C -0.103 4.103 21 C 0.180 3.820 22 N -0.740 5.740 23 C 0.705 3.295 24 N -0.869 5.869 25 O -0.597 6.597 26 C -0.107 4.107 27 C -0.097 4.097 28 N -0.473 5.473 29 H 0.273 0.727 30 H 0.097 0.903 31 H 0.096 0.904 32 H 0.091 0.909 33 H 0.398 0.602 34 H 0.140 0.860 35 H 0.128 0.872 36 H 0.076 0.924 37 H 0.076 0.924 38 H 0.399 0.601 39 H 0.397 0.603 40 H 0.414 0.586 41 H 0.126 0.874 42 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.555 -3.994 -5.357 17.853 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.276 5.276 2 C -0.171 4.171 3 Si 0.722 3.278 4 H -0.192 1.192 5 H -0.204 1.204 6 H -0.192 1.192 7 C -0.454 4.454 8 H 0.100 0.900 9 C 0.145 3.855 10 C -0.327 4.327 11 C -0.060 4.060 12 C -0.382 4.382 13 C 0.132 3.868 14 N -0.308 5.308 15 C 0.290 3.710 16 O -0.263 6.263 17 C -0.107 4.107 18 C -0.085 4.085 19 C -0.124 4.124 20 C -0.104 4.104 21 C 0.057 3.943 22 N -0.397 5.397 23 C 0.403 3.597 24 N -0.437 5.437 25 O -0.475 6.475 26 C -0.125 4.125 27 C -0.116 4.116 28 N -0.192 5.192 29 H 0.085 0.915 30 H 0.115 0.885 31 H 0.114 0.886 32 H 0.109 0.891 33 H 0.233 0.767 34 H 0.158 0.842 35 H 0.146 0.854 36 H 0.094 0.906 37 H 0.095 0.905 38 H 0.233 0.767 39 H 0.225 0.775 40 H 0.246 0.754 41 H 0.144 0.856 42 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -17.348 -2.125 -4.505 18.049 hybrid contribution 0.850 -0.785 -0.750 1.379 sum -16.498 -2.910 -5.255 17.558 Atomic orbital electron populations 1.70306 1.05807 1.27537 1.23943 1.26179 0.95145 1.00626 0.95189 0.86560 0.80190 0.81399 0.79676 1.19174 1.20380 1.19162 1.19555 0.94066 0.89365 1.42434 0.89954 1.18388 0.87138 0.91991 0.87953 1.21634 0.98592 0.93515 1.18946 1.20561 0.93157 0.96557 0.95750 1.20479 0.94827 0.94872 1.28041 1.18573 0.83079 0.91039 0.94069 1.43273 1.05233 1.09020 1.73244 1.18518 0.86440 0.85255 0.80770 1.91232 1.64734 1.30732 1.39569 1.20511 0.94446 0.94091 1.01639 1.21345 0.93847 0.98046 0.95289 1.21047 0.93709 0.97790 0.99902 1.19928 0.94526 0.93734 1.02224 1.20056 0.90038 1.03231 0.81002 1.45182 1.05744 1.79862 1.08887 1.15973 0.83022 0.77511 0.83209 1.42996 1.12252 1.82406 1.06009 1.90979 1.49391 1.58038 1.49110 1.20965 0.94194 0.97264 1.00113 1.21365 0.93983 0.97685 0.98547 1.68700 1.07066 1.23189 1.20264 0.91545 0.88517 0.88571 0.89082 0.76732 0.84227 0.85448 0.90566 0.90545 0.76663 0.77487 0.75389 0.85564 0.85532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.66 -17.89 8.98 55.55 0.50 -17.39 16 2 C 0.06 1.50 5.50 -17.34 -0.10 1.40 16 3 Si 0.90 19.00 29.56 -169.99 -5.02 13.97 16 4 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 5 H -0.28 -5.79 7.11 56.52 0.40 -5.39 16 6 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 7 C -0.42 -11.52 9.14 -37.73 -0.34 -11.86 16 8 H 0.08 2.09 7.85 -52.49 -0.41 1.68 16 9 C 0.27 7.52 6.55 -84.99 -0.56 6.96 16 10 C -0.30 -7.56 9.83 -38.66 -0.38 -7.94 16 11 C -0.04 -0.81 10.15 -39.39 -0.40 -1.21 16 12 C -0.36 -7.86 9.95 -38.89 -0.39 -8.25 16 13 C 0.37 8.91 7.43 -155.04 -1.15 7.76 16 14 N -0.66 -12.77 5.33 -12.28 -0.07 -12.83 16 15 C 0.51 10.10 7.73 -12.35 -0.10 10.00 16 16 O -0.40 -9.78 12.10 5.32 0.06 -9.72 16 17 C -0.10 -1.52 5.87 -104.97 -0.62 -2.14 16 18 C -0.07 -0.90 9.60 -39.18 -0.38 -1.27 16 19 C -0.11 -1.10 9.68 -39.64 -0.38 -1.49 16 20 C -0.10 -0.96 5.25 -104.53 -0.55 -1.51 16 21 C 0.18 1.56 5.79 -5.19 -0.03 1.53 16 22 N -0.74 -5.72 5.55 -66.41 -0.37 -6.09 16 23 C 0.70 6.72 8.84 -86.92 -0.77 5.95 16 24 N -0.87 -4.62 8.88 27.63 0.25 -4.37 16 25 O -0.60 -8.46 17.18 5.29 0.09 -8.37 16 26 C -0.11 -1.00 9.68 -39.64 -0.38 -1.38 16 27 C -0.10 -1.10 9.54 -39.18 -0.37 -1.47 16 28 N -0.47 -13.11 5.73 -10.27 -0.06 -13.17 16 29 H 0.27 6.94 8.29 -40.82 -0.34 6.61 16 30 H 0.10 2.23 8.06 -52.49 -0.42 1.81 16 31 H 0.10 1.82 8.06 -52.49 -0.42 1.40 16 32 H 0.09 1.70 8.06 -52.48 -0.42 1.28 16 33 H 0.40 5.89 6.75 -40.82 -0.28 5.62 16 34 H 0.14 2.04 7.65 -52.48 -0.40 1.64 16 35 H 0.13 1.10 8.06 -52.49 -0.42 0.68 16 36 H 0.08 0.68 8.08 -51.93 -0.42 0.26 16 37 H 0.08 0.70 8.08 -51.93 -0.42 0.28 16 38 H 0.40 2.32 8.48 -40.82 -0.35 1.97 16 39 H 0.40 0.99 8.84 -40.82 -0.36 0.63 16 40 H 0.41 1.83 8.93 -40.82 -0.36 1.47 16 41 H 0.13 0.92 8.06 -52.48 -0.42 0.49 16 42 H 0.13 1.20 6.42 -52.49 -0.34 0.86 16 LS Contribution 364.82 15.07 5.50 5.50 Total: -1.00 -35.88 364.82 -10.60 -46.47 By element: Atomic # 1 Polarization: 15.50 SS G_CDS: -4.58 Total: 10.92 kcal Atomic # 6 Polarization: 1.97 SS G_CDS: -6.89 Total: -4.92 kcal Atomic # 7 Polarization: -54.10 SS G_CDS: 0.25 Total: -53.85 kcal Atomic # 8 Polarization: -18.24 SS G_CDS: 0.16 Total: -18.09 kcal Atomic # 14 Polarization: 19.00 SS G_CDS: -5.02 Total: 13.97 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -35.88 -10.60 -46.47 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001471517478.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.317 kcal (2) G-P(sol) polarization free energy of solvation -35.876 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.441 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.597 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.473 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.845 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds