Wall clock time and date at job start Wed Apr 1 2020 00:07:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38362 * 119.86027 * 2 1 4 4 C 1.37940 * 120.15665 * 180.23994 * 3 2 1 5 5 C 1.39599 * 119.88230 * 359.50461 * 4 3 2 6 6 C 1.47856 * 120.13933 * 180.23749 * 5 4 3 7 7 O 1.21554 * 119.99566 * 0.02562 * 6 5 4 8 8 N 1.34769 * 119.99884 * 180.02562 * 6 5 4 9 9 C 1.46505 * 119.99842 * 180.02562 * 8 6 5 10 10 C 1.53000 * 109.47091 * 179.97438 * 9 8 6 11 11 O 1.42903 * 109.47164 * 65.00155 * 10 9 8 12 12 C 1.42896 * 114.00218 * 180.02562 * 11 10 9 13 13 C 1.53003 * 109.47451 * 179.97438 * 12 11 10 14 14 N 1.46496 * 109.47093 * 64.99629 * 13 12 11 15 15 C 1.46497 * 120.00062 * 270.00329 * 14 13 12 16 16 C 1.36934 * 119.99943 * 89.99904 * 14 13 12 17 17 H 1.08000 * 120.00248 * 20.36561 * 16 14 13 18 18 C 1.38814 * 120.00332 * 200.36540 * 16 14 13 19 19 N 1.31615 * 119.99634 * 14.99657 * 18 16 14 20 20 Si 1.86795 * 120.00303 * 194.99627 * 18 16 14 21 21 H 1.48501 * 109.47340 * 85.00014 * 20 18 16 22 22 H 1.48500 * 109.47348 * 204.99929 * 20 18 16 23 23 H 1.48498 * 109.47298 * 325.00115 * 20 18 16 24 24 C 1.39536 * 119.72211 * 0.26073 * 5 4 3 25 25 C 1.38098 * 119.84260 * 359.97438 * 24 5 4 26 26 Cl 1.73600 * 119.94547 * 179.97438 * 25 24 5 27 27 H 1.09003 * 109.47122 * 270.23388 * 1 2 3 28 28 H 1.08999 * 109.47387 * 30.22953 * 1 2 3 29 29 H 1.09002 * 109.47380 * 150.23677 * 1 2 3 30 30 H 1.07994 * 119.91853 * 359.97438 * 3 2 1 31 31 H 1.08002 * 120.05860 * 179.79303 * 4 3 2 32 32 H 0.97002 * 120.00322 * 0.02562 * 8 6 5 33 33 H 1.09000 * 109.46896 * 299.99452 * 9 8 6 34 34 H 1.08998 * 109.47164 * 59.99848 * 9 8 6 35 35 H 1.09003 * 109.47177 * 184.99596 * 10 9 8 36 36 H 1.08998 * 109.47553 * 305.00004 * 10 9 8 37 37 H 1.09006 * 109.46947 * 300.00123 * 12 11 10 38 38 H 1.09007 * 109.47146 * 59.99515 * 12 11 10 39 39 H 1.09003 * 109.47126 * 184.99723 * 13 12 11 40 40 H 1.09004 * 109.46657 * 304.99797 * 13 12 11 41 41 H 1.09003 * 109.46989 * 95.10276 * 15 14 13 42 42 H 1.09001 * 109.47239 * 215.10216 * 15 14 13 43 43 H 1.08993 * 109.47143 * 335.10460 * 15 14 13 44 44 H 0.97004 * 120.00200 * 180.02562 * 19 18 16 45 45 H 1.08003 * 120.07745 * 179.97438 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1959 1.1999 0.0000 4 6 3.5752 1.2071 -0.0050 5 6 4.2770 0.0003 0.0004 6 6 5.7556 0.0014 0.0004 7 8 6.3625 1.0545 -0.0039 8 7 6.4302 -1.1653 0.0051 9 6 7.8953 -1.1642 0.0057 10 6 8.4063 -2.6063 0.0120 11 8 8.0292 -3.2507 -1.2065 12 6 8.4596 -4.6099 -1.3026 13 6 8.0025 -5.1963 -2.6399 14 7 8.6780 -4.4975 -3.7359 15 6 8.0689 -3.3049 -4.3300 16 6 9.8789 -4.9589 -4.2051 17 1 10.1734 -5.9816 -4.0217 18 6 10.7178 -4.1121 -4.9165 19 7 10.5148 -2.8119 -4.8923 20 14 12.1349 -4.8178 -5.9080 21 1 11.6454 -5.2269 -7.2491 22 1 13.1937 -3.7878 -6.0606 23 1 12.6922 -5.9998 -5.2028 24 6 3.5773 -1.2069 0.0053 25 6 2.1963 -1.2007 0.0054 26 17 1.3230 -2.7011 0.0108 27 1 -0.3633 0.0042 1.0277 28 1 -0.3634 0.8879 -0.5174 29 1 -0.3634 -0.8921 -0.5101 30 1 1.6523 2.1331 -0.0004 31 1 4.1113 2.1446 -0.0084 32 1 5.9458 -2.0057 0.0081 33 1 8.2585 -0.6536 -0.8862 34 1 8.2579 -0.6467 0.8938 35 1 9.4926 -2.6065 0.1019 36 1 7.9718 -3.1422 0.8559 37 1 9.5470 -4.6520 -1.2396 38 1 8.0258 -5.1870 -0.4859 39 1 8.2527 -6.2567 -2.6761 40 1 6.9241 -5.0738 -2.7407 41 1 8.4797 -2.4130 -3.8567 42 1 8.2837 -3.2810 -5.3984 43 1 6.9901 -3.3334 -4.1768 44 1 11.1007 -2.2201 -5.3897 45 1 4.1144 -2.1439 0.0091 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001485777777.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:07:09 Heat of formation + Delta-G solvation = -63.457917 kcal Electronic energy + Delta-G solvation = -26781.690986 eV Core-core repulsion = 22825.019962 eV Total energy + Delta-G solvation = -3956.671025 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.134 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.38796 -39.81712 -39.00817 -37.44911 -37.22145 -35.83983 -34.06108 -33.38621 -31.92308 -30.99392 -29.56476 -28.15465 -27.80121 -24.85669 -24.22807 -23.92758 -22.95107 -22.14303 -21.50719 -19.25773 -18.77494 -17.77292 -17.54963 -16.99064 -16.63587 -16.43001 -16.30159 -16.23542 -15.95641 -15.38600 -15.22842 -15.18161 -15.05331 -14.89265 -14.34702 -14.10928 -13.83066 -13.32719 -13.29505 -13.16305 -13.03176 -12.90757 -12.71591 -12.55083 -12.49945 -12.45487 -12.35133 -12.29204 -12.01354 -11.92760 -11.78318 -11.68707 -11.15376 -10.60976 -10.39358 -10.28502 -9.98946 -9.71231 -8.76194 -7.77810 -5.23791 -0.35822 0.09327 1.05225 1.46296 1.48585 1.56186 1.66768 2.05907 2.53089 2.64543 2.85314 3.34538 3.48555 3.63132 3.76326 3.88330 3.95192 4.02193 4.15089 4.18545 4.38811 4.44063 4.52220 4.58401 4.61593 4.62266 4.68370 4.73041 4.79892 4.86098 4.92808 4.94876 4.99945 5.18349 5.20552 5.23879 5.29918 5.31520 5.36511 5.64561 5.66381 5.81563 6.34464 6.40704 6.45680 7.06961 7.18365 7.92687 8.37674 9.25241 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.014624 B = 0.002422 C = 0.002292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1914.212268 B =11556.597270 C =12211.037735 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.049 4.049 3 C -0.111 4.111 4 C -0.061 4.061 5 C -0.144 4.144 6 C 0.555 3.445 7 O -0.579 6.579 8 N -0.705 5.705 9 C 0.129 3.871 10 C 0.053 3.947 11 O -0.394 6.394 12 C 0.051 3.949 13 C 0.144 3.856 14 N -0.613 5.613 15 C 0.195 3.805 16 C -0.260 4.260 17 H 0.076 0.924 18 C -0.059 4.059 19 N -0.937 5.937 20 Si 0.966 3.034 21 H -0.287 1.287 22 H -0.300 1.300 23 H -0.266 1.266 24 C -0.073 4.073 25 C -0.057 4.057 26 Cl -0.057 7.057 27 H 0.092 0.908 28 H 0.093 0.907 29 H 0.074 0.926 30 H 0.170 0.830 31 H 0.139 0.861 32 H 0.412 0.588 33 H 0.046 0.954 34 H 0.096 0.904 35 H 0.058 0.942 36 H 0.082 0.918 37 H 0.022 0.978 38 H 0.071 0.929 39 H 0.073 0.927 40 H 0.060 0.940 41 H 0.000 1.000 42 H 0.006 0.994 43 H 0.019 0.981 44 H 0.244 0.756 45 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.596 3.221 15.998 27.068 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.050 4.050 3 C -0.128 4.128 4 C -0.080 4.080 5 C -0.147 4.147 6 C 0.343 3.657 7 O -0.461 6.461 8 N -0.357 5.357 9 C 0.006 3.994 10 C -0.024 4.024 11 O -0.314 6.314 12 C -0.028 4.028 13 C 0.018 3.982 14 N -0.336 5.336 15 C 0.050 3.950 16 C -0.390 4.390 17 H 0.094 0.906 18 C -0.253 4.253 19 N -0.584 5.584 20 Si 0.795 3.205 21 H -0.214 1.214 22 H -0.226 1.226 23 H -0.191 1.191 24 C -0.092 4.092 25 C -0.084 4.084 26 Cl -0.028 7.028 27 H 0.111 0.889 28 H 0.111 0.889 29 H 0.093 0.907 30 H 0.187 0.813 31 H 0.157 0.843 32 H 0.250 0.750 33 H 0.064 0.936 34 H 0.114 0.886 35 H 0.076 0.924 36 H 0.100 0.900 37 H 0.041 0.959 38 H 0.089 0.911 39 H 0.092 0.908 40 H 0.079 0.921 41 H 0.018 0.982 42 H 0.025 0.975 43 H 0.038 0.962 44 H 0.053 0.947 45 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -21.237 3.980 15.768 26.748 hybrid contribution 1.368 -0.639 -0.613 1.629 sum -19.869 3.341 15.155 25.211 Atomic orbital electron populations 1.21036 0.87944 1.04720 1.04270 1.20377 0.98499 0.90918 0.95215 1.21310 0.92812 0.98696 1.00026 1.21521 0.94916 0.97520 0.94038 1.19771 0.91736 0.94920 1.08292 1.18542 0.87846 0.83555 0.75721 1.90751 1.70733 1.32399 1.52174 1.45777 1.07440 1.08758 1.73734 1.21339 0.79551 0.96306 1.02242 1.22724 0.99608 0.92025 0.88078 1.87969 1.78033 1.26635 1.38760 1.23266 0.97675 0.82103 0.99710 1.21151 0.96169 0.95452 0.85400 1.44127 1.21324 1.30820 1.37316 1.20307 0.91295 0.88553 0.94825 1.19584 0.95207 0.94618 1.29594 0.90614 1.25762 1.00831 0.95385 1.03361 1.70305 1.40633 1.02493 1.44940 0.85288 0.78839 0.77293 0.79052 1.21428 1.22650 1.19087 1.21266 0.92786 0.98099 0.97040 1.20796 0.91937 0.88037 1.07589 1.98376 1.76013 1.31462 1.96900 0.88916 0.88867 0.90735 0.81250 0.84325 0.75013 0.93582 0.88610 0.92381 0.90036 0.95934 0.91108 0.90842 0.92122 0.98207 0.97481 0.96211 0.94706 0.83675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.09 9.60 71.23 0.68 -0.41 16 2 C -0.05 -0.71 5.89 -19.78 -0.12 -0.82 16 3 C -0.11 -1.57 9.68 22.23 0.22 -1.35 16 4 C -0.06 -1.22 9.59 22.53 0.22 -1.01 16 5 C -0.14 -3.35 5.87 -20.09 -0.12 -3.47 16 6 C 0.55 16.22 7.77 86.79 0.67 16.89 16 7 O -0.58 -21.14 16.35 -3.89 -0.06 -21.20 16 8 N -0.71 -18.57 5.45 -465.96 -2.54 -21.12 16 9 C 0.13 3.71 6.06 86.38 0.52 4.23 16 10 C 0.05 1.45 6.07 71.98 0.44 1.89 16 11 O -0.39 -14.20 9.84 -148.98 -1.47 -15.66 16 12 C 0.05 1.77 6.28 71.98 0.45 2.22 16 13 C 0.14 5.60 6.11 86.38 0.53 6.13 16 14 N -0.61 -31.21 2.89 -726.94 -2.10 -33.31 16 15 C 0.20 10.33 8.62 127.77 1.10 11.43 16 16 C -0.26 -14.34 9.68 84.03 0.81 -13.53 16 17 H 0.08 3.97 7.86 -2.91 -0.02 3.95 16 18 C -0.06 -3.36 5.06 84.86 0.43 -2.93 16 19 N -0.94 -57.62 10.67 21.65 0.23 -57.38 16 20 Si 0.97 45.97 29.58 68.60 2.03 48.00 16 21 H -0.29 -13.49 7.11 99.48 0.71 -12.79 16 22 H -0.30 -14.49 7.11 99.48 0.71 -13.79 16 23 H -0.27 -11.86 7.11 99.48 0.71 -11.16 16 24 C -0.07 -1.43 9.32 22.55 0.21 -1.22 16 25 C -0.06 -1.00 6.31 22.29 0.14 -0.86 16 26 Cl -0.06 -0.92 27.27 -2.72 -0.07 -0.99 16 27 H 0.09 0.62 8.14 -2.39 -0.02 0.60 16 28 H 0.09 0.51 8.08 -2.39 -0.02 0.49 16 29 H 0.07 0.73 6.88 -2.39 -0.02 0.72 16 30 H 0.17 1.29 8.06 -2.91 -0.02 1.27 16 31 H 0.14 2.85 7.65 -2.91 -0.02 2.82 16 32 H 0.41 9.01 6.51 -92.71 -0.60 8.41 16 33 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 34 H 0.10 2.42 8.14 -2.39 -0.02 2.40 16 35 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 36 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 37 H 0.02 0.89 8.14 -2.38 -0.02 0.87 16 38 H 0.07 1.82 8.14 -2.38 -0.02 1.80 16 39 H 0.07 2.61 8.03 -2.39 -0.02 2.59 16 40 H 0.06 2.14 7.86 -2.39 -0.02 2.13 16 41 H 0.00 -0.02 7.40 -2.39 -0.02 -0.04 16 42 H 0.01 0.37 7.21 -2.39 -0.02 0.36 16 43 H 0.02 0.91 7.83 -2.39 -0.02 0.89 16 44 H 0.24 14.69 8.31 -92.70 -0.77 13.92 16 45 H 0.15 2.49 6.40 -2.91 -0.02 2.47 16 Total: -1.00 -74.21 390.39 2.60 -71.61 By element: Atomic # 1 Polarization: 12.46 SS G_CDS: 0.40 Total: 12.86 kcal Atomic # 6 Polarization: 11.01 SS G_CDS: 6.19 Total: 17.20 kcal Atomic # 7 Polarization: -107.40 SS G_CDS: -4.41 Total: -111.81 kcal Atomic # 8 Polarization: -35.34 SS G_CDS: -1.53 Total: -36.87 kcal Atomic # 14 Polarization: 45.97 SS G_CDS: 2.03 Total: 48.00 kcal Atomic # 17 Polarization: -0.92 SS G_CDS: -0.07 Total: -0.99 kcal Total: -74.21 2.60 -71.61 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485777777.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.148 kcal (2) G-P(sol) polarization free energy of solvation -74.207 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.601 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.606 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds