Wall clock time and date at job start Wed Apr 1 2020 00:06:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38423 * 119.84042 * 2 1 4 4 C 1.37899 * 120.18068 * 179.97438 * 3 2 1 5 5 C 1.39633 * 119.86736 * 359.97438 * 4 3 2 6 6 C 1.47765 * 120.15458 * 179.97438 * 5 4 3 7 7 O 1.21555 * 120.00243 * 126.49171 * 6 5 4 8 8 N 1.34781 * 120.00058 * 306.48310 * 6 5 4 9 9 C 1.46508 * 119.99690 * 5.30424 * 8 6 5 10 10 C 1.46495 * 120.00456 * 185.30346 * 8 6 5 11 11 C 1.53003 * 109.47070 * 89.99850 * 10 8 6 12 12 O 1.42904 * 109.46882 * 65.00619 * 11 10 8 13 13 C 1.42894 * 113.99780 * 180.02562 * 12 11 10 14 14 C 1.53008 * 109.47125 * 179.97438 * 13 12 11 15 15 N 1.46499 * 109.46898 * 64.99561 * 14 13 12 16 16 C 1.36934 * 119.99985 * 179.97438 * 15 14 13 17 17 H 1.08000 * 120.00173 * 0.02562 * 16 15 14 18 18 C 1.38810 * 119.99977 * 180.02562 * 16 15 14 19 19 N 1.31614 * 120.00067 * 0.02562 * 18 16 15 20 20 Si 1.86804 * 119.99801 * 179.97438 * 18 16 15 21 21 H 1.48503 * 109.46818 * 60.00541 * 20 18 16 22 22 H 1.48506 * 109.47114 * 180.02562 * 20 18 16 23 23 H 1.48498 * 109.47555 * 300.00429 * 20 18 16 24 24 C 1.39689 * 119.68788 * 0.02562 * 5 4 3 25 25 Cl 1.73597 * 120.09200 * 179.97438 * 24 5 4 26 26 C 1.38155 * 119.81529 * 0.24751 * 24 5 4 27 27 H 1.09005 * 109.46886 * 89.99850 * 1 2 3 28 28 H 1.08998 * 109.46660 * 209.99772 * 1 2 3 29 29 H 1.08996 * 109.47078 * 329.99888 * 1 2 3 30 30 H 1.07995 * 119.90984 * 359.96155 * 3 2 1 31 31 H 1.08005 * 120.06734 * 179.97438 * 4 3 2 32 32 H 1.09003 * 109.46755 * 125.47844 * 9 8 6 33 33 H 1.08996 * 109.46899 * 245.47358 * 9 8 6 34 34 H 1.08999 * 109.46825 * 5.48249 * 9 8 6 35 35 H 1.08994 * 109.47617 * 210.00582 * 10 8 6 36 36 H 1.09000 * 109.46827 * 330.00500 * 10 8 6 37 37 H 1.09004 * 109.46841 * 185.00135 * 11 10 8 38 38 H 1.09002 * 109.47165 * 305.00320 * 11 10 8 39 39 H 1.08996 * 109.47360 * 299.99546 * 13 12 11 40 40 H 1.08998 * 109.47575 * 59.99834 * 13 12 11 41 41 H 1.08993 * 109.46823 * 184.99940 * 14 13 12 42 42 H 1.08996 * 109.46768 * 304.99966 * 14 13 12 43 43 H 0.97003 * 119.99882 * 0.02562 * 15 14 13 44 44 H 0.97003 * 119.99702 * 179.97438 * 19 18 16 45 45 H 1.08008 * 119.93171 * 179.72301 * 26 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1958 1.2007 0.0000 4 6 3.5748 1.2089 0.0005 5 6 4.2773 0.0022 0.0016 6 6 5.7549 0.0035 0.0016 7 8 6.3633 -0.6212 0.8485 8 7 6.4282 0.6973 -0.9375 9 6 5.6996 1.5429 -1.8864 10 6 7.8886 0.6060 -1.0094 11 6 8.2825 -0.5420 -1.9410 12 8 7.8565 -0.2429 -3.2719 13 6 8.1769 -1.2569 -4.2263 14 6 7.6760 -0.8329 -5.6085 15 7 8.4066 0.3582 -6.0484 16 6 8.1276 0.9223 -7.2646 17 1 7.3686 0.4893 -7.8994 18 6 8.8203 2.0506 -7.6817 19 7 9.7456 2.5780 -6.9084 20 14 8.4402 2.8196 -9.3411 21 1 7.0161 3.2391 -9.3776 22 1 9.3111 4.0044 -9.5488 23 1 8.6914 1.8266 -10.4162 24 6 3.5766 -1.2063 0.0016 25 17 4.4395 -2.7127 0.0023 26 6 2.1951 -1.1993 -0.0046 27 1 -0.3633 0.0000 -1.0277 28 1 -0.3632 -0.8900 0.5138 29 1 -0.3633 0.8899 0.5138 30 1 1.6517 2.1336 -0.0006 31 1 4.1103 2.1468 0.0001 32 1 6.1006 2.5559 -1.8526 33 1 5.8132 1.1406 -2.8931 34 1 4.6429 1.5613 -1.6195 35 1 8.2927 1.5420 -1.3950 36 1 8.2904 0.4198 -0.0134 37 1 9.3652 -0.6671 -1.9256 38 1 7.8054 -1.4626 -1.6050 39 1 9.2572 -1.3974 -4.2585 40 1 7.6973 -2.1922 -3.9377 41 1 7.8405 -1.6431 -6.3188 42 1 6.6110 -0.6069 -5.5554 43 1 9.0886 0.7469 -5.4785 44 1 10.2299 3.3662 -7.2001 45 1 1.6515 -2.1326 -0.0092 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001486497853.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:06:04 Heat of formation + Delta-G solvation = -41.494349 kcal Electronic energy + Delta-G solvation = -27177.423300 eV Core-core repulsion = 23221.704687 eV Total energy + Delta-G solvation = -3955.718613 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.134 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.66349 -38.96150 -37.64269 -36.71195 -35.56735 -34.37617 -33.33487 -31.49809 -31.21542 -29.98054 -27.92631 -27.52367 -26.31791 -23.58830 -23.42798 -23.14805 -21.94664 -21.10147 -19.78464 -17.61951 -17.13726 -16.81925 -16.41694 -16.18318 -15.89412 -15.73594 -14.94936 -14.88180 -14.44057 -14.33506 -14.28321 -13.81460 -13.63166 -13.17245 -13.04716 -12.93100 -12.88456 -12.63558 -12.55606 -12.45381 -12.18060 -11.79591 -11.69964 -11.61703 -11.41718 -11.25445 -11.12164 -10.88372 -10.76817 -10.48411 -10.02715 -9.97118 -9.67314 -9.21159 -9.18156 -8.99163 -8.84325 -8.61888 -6.85728 -5.70943 -2.98848 0.53932 0.80739 1.87270 2.49925 2.87812 3.26822 3.46362 3.50437 3.51692 4.05403 4.20218 4.34833 4.41494 4.63504 4.76562 4.79582 4.96115 5.11208 5.18021 5.20553 5.20934 5.31332 5.40483 5.48399 5.56873 5.58262 5.60756 5.62370 5.65008 5.73004 5.76857 5.79414 5.89210 5.98066 6.02991 6.10339 6.31991 6.38320 6.46027 6.64235 6.78582 7.28863 7.63059 7.73168 8.03646 8.47771 9.59160 10.18178 10.54470 11.51874 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.012654 B = 0.002720 C = 0.002522 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2212.188712 B =10290.816897 C =11099.640787 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.057 4.057 3 C -0.122 4.122 4 C -0.075 4.075 5 C -0.121 4.121 6 C 0.558 3.442 7 O -0.527 6.527 8 N -0.595 5.595 9 C 0.061 3.939 10 C 0.120 3.880 11 C 0.045 3.955 12 O -0.369 6.369 13 C 0.059 3.941 14 C 0.156 3.844 15 N -0.726 5.726 16 C -0.238 4.238 17 H 0.068 0.932 18 C -0.014 4.014 19 N -0.933 5.933 20 Si 0.906 3.094 21 H -0.286 1.286 22 H -0.291 1.291 23 H -0.287 1.287 24 C 0.011 3.989 25 Cl -0.048 7.048 26 C -0.118 4.118 27 H 0.078 0.922 28 H 0.070 0.930 29 H 0.072 0.928 30 H 0.136 0.864 31 H 0.141 0.859 32 H 0.067 0.933 33 H 0.081 0.919 34 H 0.080 0.920 35 H 0.092 0.908 36 H 0.097 0.903 37 H 0.057 0.943 38 H 0.046 0.954 39 H 0.047 0.953 40 H 0.041 0.959 41 H 0.031 0.969 42 H 0.025 0.975 43 H 0.387 0.613 44 H 0.254 0.746 45 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.724 -5.260 18.271 25.322 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.057 4.057 3 C -0.140 4.140 4 C -0.093 4.093 5 C -0.124 4.124 6 C 0.345 3.655 7 O -0.403 6.403 8 N -0.327 5.327 9 C -0.081 4.081 10 C -0.002 4.002 11 C -0.033 4.033 12 O -0.288 6.288 13 C -0.018 4.018 14 C 0.028 3.972 15 N -0.371 5.371 16 C -0.369 4.369 17 H 0.086 0.914 18 C -0.210 4.210 19 N -0.582 5.582 20 Si 0.737 3.263 21 H -0.213 1.213 22 H -0.217 1.217 23 H -0.214 1.214 24 C -0.017 4.017 25 Cl -0.019 7.019 26 C -0.136 4.136 27 H 0.096 0.904 28 H 0.089 0.911 29 H 0.091 0.909 30 H 0.153 0.847 31 H 0.159 0.841 32 H 0.086 0.914 33 H 0.100 0.900 34 H 0.098 0.902 35 H 0.110 0.890 36 H 0.115 0.885 37 H 0.075 0.925 38 H 0.064 0.936 39 H 0.066 0.934 40 H 0.059 0.941 41 H 0.048 0.952 42 H 0.043 0.957 43 H 0.221 0.779 44 H 0.064 0.936 45 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -16.457 -5.514 18.500 25.367 hybrid contribution 0.321 0.214 -0.851 0.934 sum -16.136 -5.300 17.649 24.494 Atomic orbital electron populations 1.20865 0.90128 1.03351 1.03055 1.20038 0.96662 0.92309 0.96717 1.21088 0.93700 0.98168 1.01051 1.21284 0.94377 0.96735 0.96939 1.19773 0.93967 0.92960 1.05736 1.18149 0.86573 0.79316 0.81504 1.90793 1.69202 1.43029 1.37325 1.47633 1.07320 1.45919 1.31799 1.22284 0.96844 0.94539 0.94417 1.21570 0.79149 0.99771 0.99744 1.22859 0.98620 0.97681 0.84169 1.88008 1.80606 1.44273 1.15924 1.22770 0.99033 0.89980 0.90044 1.20676 0.95741 0.90960 0.89844 1.42276 1.44877 1.29860 1.20111 1.19192 1.16262 1.07263 0.94206 0.91366 1.24722 0.99092 0.98665 0.98544 1.69662 1.27016 1.24299 1.37180 0.86281 0.77390 0.78632 0.83950 1.21316 1.21732 1.21362 1.20878 0.92301 0.87015 1.01485 1.98410 1.76837 1.30207 1.96419 1.20902 0.91396 0.99072 1.02279 0.90363 0.91065 0.90926 0.84661 0.84113 0.91431 0.90038 0.90192 0.88959 0.88453 0.92518 0.93598 0.93428 0.94071 0.95150 0.95727 0.77927 0.93575 0.84376 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.56 10.00 36.01 0.36 -0.20 16 2 C -0.06 -0.43 5.89 -104.54 -0.62 -1.05 16 3 C -0.12 -0.92 9.68 -39.64 -0.38 -1.31 16 4 C -0.07 -0.69 7.34 -39.19 -0.29 -0.98 16 5 C -0.12 -1.46 5.05 -104.94 -0.53 -1.99 16 6 C 0.56 7.94 6.61 -12.36 -0.08 7.86 16 7 O -0.53 -8.86 15.68 5.32 0.08 -8.77 16 8 N -0.59 -7.97 2.84 -182.72 -0.52 -8.49 16 9 C 0.06 0.75 9.84 59.85 0.59 1.34 16 10 C 0.12 1.60 5.90 -4.04 -0.02 1.57 16 11 C 0.04 0.66 6.28 37.16 0.23 0.89 16 12 O -0.37 -6.58 9.17 -35.23 -0.32 -6.90 16 13 C 0.06 1.03 6.07 37.16 0.23 1.26 16 14 C 0.16 3.27 6.65 -4.04 -0.03 3.24 16 15 N -0.73 -18.99 5.55 -59.91 -0.33 -19.33 16 16 C -0.24 -6.79 9.99 -15.06 -0.15 -6.94 16 17 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 18 C -0.01 -0.42 5.50 -17.43 -0.10 -0.51 16 19 N -0.93 -28.53 13.06 55.49 0.72 -27.80 16 20 Si 0.91 22.56 29.55 -169.99 -5.02 17.54 16 21 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 22 H -0.29 -7.29 7.11 56.52 0.40 -6.88 16 23 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 24 C 0.01 0.13 6.34 -39.07 -0.25 -0.12 16 25 Cl -0.05 -0.62 27.35 -51.86 -1.42 -2.04 16 26 C -0.12 -1.08 9.47 -39.60 -0.37 -1.46 16 27 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 28 H 0.07 0.29 8.08 -51.93 -0.42 -0.13 16 29 H 0.07 0.27 8.08 -51.93 -0.42 -0.15 16 30 H 0.14 0.68 8.06 -52.49 -0.42 0.25 16 31 H 0.14 1.08 7.11 -52.48 -0.37 0.70 16 32 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.08 1.21 7.27 -51.93 -0.38 0.83 16 34 H 0.08 0.81 3.92 -51.93 -0.20 0.61 16 35 H 0.09 1.19 8.07 -51.93 -0.42 0.77 16 36 H 0.10 1.23 7.35 -51.93 -0.38 0.85 16 37 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 38 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 40 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 41 H 0.03 0.63 8.14 -51.93 -0.42 0.20 16 42 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 43 H 0.39 10.71 7.67 -40.82 -0.31 10.40 16 44 H 0.25 7.52 8.31 -40.82 -0.34 7.18 16 45 H 0.14 1.01 8.06 -52.48 -0.42 0.59 16 LS Contribution 390.06 15.07 5.88 5.88 Total: -1.00 -34.23 390.06 -9.02 -43.25 By element: Atomic # 1 Polarization: 11.74 SS G_CDS: -6.68 Total: 5.06 kcal Atomic # 6 Polarization: 3.01 SS G_CDS: -1.41 Total: 1.60 kcal Atomic # 7 Polarization: -55.49 SS G_CDS: -0.13 Total: -55.61 kcal Atomic # 8 Polarization: -15.43 SS G_CDS: -0.24 Total: -15.67 kcal Atomic # 14 Polarization: 22.56 SS G_CDS: -5.02 Total: 17.54 kcal Atomic # 17 Polarization: -0.62 SS G_CDS: -1.42 Total: -2.04 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -34.23 -9.02 -43.25 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001486497853.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.754 kcal (2) G-P(sol) polarization free energy of solvation -34.228 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.249 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.494 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds