Wall clock time and date at job start Wed Apr 1 2020 00:06:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38423 * 119.84042 * 2 1 4 4 C 1.37899 * 120.18068 * 179.97438 * 3 2 1 5 5 C 1.39633 * 119.86736 * 359.97438 * 4 3 2 6 6 C 1.47765 * 120.15458 * 179.97438 * 5 4 3 7 7 O 1.21555 * 120.00243 * 126.49171 * 6 5 4 8 8 N 1.34781 * 120.00058 * 306.48310 * 6 5 4 9 9 C 1.46508 * 119.99690 * 5.30424 * 8 6 5 10 10 C 1.46495 * 120.00456 * 185.30346 * 8 6 5 11 11 C 1.53003 * 109.47070 * 89.99850 * 10 8 6 12 12 O 1.42904 * 109.46882 * 65.00619 * 11 10 8 13 13 C 1.42894 * 113.99780 * 180.02562 * 12 11 10 14 14 C 1.53008 * 109.47125 * 179.97438 * 13 12 11 15 15 N 1.46499 * 109.46898 * 64.99561 * 14 13 12 16 16 C 1.36934 * 119.99985 * 179.97438 * 15 14 13 17 17 H 1.08000 * 120.00173 * 0.02562 * 16 15 14 18 18 C 1.38810 * 119.99977 * 180.02562 * 16 15 14 19 19 N 1.31614 * 120.00067 * 0.02562 * 18 16 15 20 20 Si 1.86804 * 119.99801 * 179.97438 * 18 16 15 21 21 H 1.48503 * 109.46818 * 60.00541 * 20 18 16 22 22 H 1.48506 * 109.47114 * 180.02562 * 20 18 16 23 23 H 1.48498 * 109.47555 * 300.00429 * 20 18 16 24 24 C 1.39689 * 119.68788 * 0.02562 * 5 4 3 25 25 Cl 1.73597 * 120.09200 * 179.97438 * 24 5 4 26 26 C 1.38155 * 119.81529 * 0.24751 * 24 5 4 27 27 H 1.09005 * 109.46886 * 89.99850 * 1 2 3 28 28 H 1.08998 * 109.46660 * 209.99772 * 1 2 3 29 29 H 1.08996 * 109.47078 * 329.99888 * 1 2 3 30 30 H 1.07995 * 119.90984 * 359.96155 * 3 2 1 31 31 H 1.08005 * 120.06734 * 179.97438 * 4 3 2 32 32 H 1.09003 * 109.46755 * 125.47844 * 9 8 6 33 33 H 1.08996 * 109.46899 * 245.47358 * 9 8 6 34 34 H 1.08999 * 109.46825 * 5.48249 * 9 8 6 35 35 H 1.08994 * 109.47617 * 210.00582 * 10 8 6 36 36 H 1.09000 * 109.46827 * 330.00500 * 10 8 6 37 37 H 1.09004 * 109.46841 * 185.00135 * 11 10 8 38 38 H 1.09002 * 109.47165 * 305.00320 * 11 10 8 39 39 H 1.08996 * 109.47360 * 299.99546 * 13 12 11 40 40 H 1.08998 * 109.47575 * 59.99834 * 13 12 11 41 41 H 1.08993 * 109.46823 * 184.99940 * 14 13 12 42 42 H 1.08996 * 109.46768 * 304.99966 * 14 13 12 43 43 H 0.97003 * 119.99882 * 0.02562 * 15 14 13 44 44 H 0.97003 * 119.99702 * 179.97438 * 19 18 16 45 45 H 1.08008 * 119.93171 * 179.72301 * 26 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1958 1.2007 0.0000 4 6 3.5748 1.2089 0.0005 5 6 4.2773 0.0022 0.0016 6 6 5.7549 0.0035 0.0016 7 8 6.3633 -0.6212 0.8485 8 7 6.4282 0.6973 -0.9375 9 6 5.6996 1.5429 -1.8864 10 6 7.8886 0.6060 -1.0094 11 6 8.2825 -0.5420 -1.9410 12 8 7.8565 -0.2429 -3.2719 13 6 8.1769 -1.2569 -4.2263 14 6 7.6760 -0.8329 -5.6085 15 7 8.4066 0.3582 -6.0484 16 6 8.1276 0.9223 -7.2646 17 1 7.3686 0.4893 -7.8994 18 6 8.8203 2.0506 -7.6817 19 7 9.7456 2.5780 -6.9084 20 14 8.4402 2.8196 -9.3411 21 1 7.0161 3.2391 -9.3776 22 1 9.3111 4.0044 -9.5488 23 1 8.6914 1.8266 -10.4162 24 6 3.5766 -1.2063 0.0016 25 17 4.4395 -2.7127 0.0023 26 6 2.1951 -1.1993 -0.0046 27 1 -0.3633 0.0000 -1.0277 28 1 -0.3632 -0.8900 0.5138 29 1 -0.3633 0.8899 0.5138 30 1 1.6517 2.1336 -0.0006 31 1 4.1103 2.1468 0.0001 32 1 6.1006 2.5559 -1.8526 33 1 5.8132 1.1406 -2.8931 34 1 4.6429 1.5613 -1.6195 35 1 8.2927 1.5420 -1.3950 36 1 8.2904 0.4198 -0.0134 37 1 9.3652 -0.6671 -1.9256 38 1 7.8054 -1.4626 -1.6050 39 1 9.2572 -1.3974 -4.2585 40 1 7.6973 -2.1922 -3.9377 41 1 7.8405 -1.6431 -6.3188 42 1 6.6110 -0.6069 -5.5554 43 1 9.0886 0.7469 -5.4785 44 1 10.2299 3.3662 -7.2001 45 1 1.6515 -2.1326 -0.0092 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001486497853.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:06:03 Heat of formation + Delta-G solvation = -62.662918 kcal Electronic energy + Delta-G solvation = -27178.341238 eV Core-core repulsion = 23221.704687 eV Total energy + Delta-G solvation = -3956.636551 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.134 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.58604 -39.84728 -38.97700 -37.59313 -36.82734 -36.15394 -34.10150 -33.35404 -31.97331 -31.20397 -29.36037 -28.49654 -27.33079 -25.52003 -24.50724 -23.85818 -22.85186 -22.72386 -20.74407 -19.23643 -18.61672 -17.88227 -17.53476 -17.14801 -16.94699 -16.89374 -16.44228 -16.01640 -15.71484 -15.43091 -15.05900 -14.97250 -14.90590 -14.59921 -14.40289 -14.19437 -13.85359 -13.67484 -13.43627 -13.22648 -13.13826 -13.05496 -12.89034 -12.77366 -12.70531 -12.56561 -12.32148 -12.20489 -12.08276 -12.02215 -11.91463 -11.69726 -11.03455 -10.94431 -10.53744 -9.93749 -9.80439 -9.63775 -8.97420 -7.91322 -5.20264 -0.21807 0.11086 1.02896 1.48031 1.48803 1.52228 1.58350 1.92229 2.50390 2.58457 2.75436 3.33244 3.42085 3.67571 3.83792 3.94166 4.02971 4.08232 4.17377 4.19509 4.25021 4.28406 4.34115 4.43349 4.43757 4.50889 4.62426 4.63376 4.67060 4.77638 4.83160 4.87550 4.96355 5.01281 5.04507 5.11669 5.12548 5.23375 5.39771 5.43749 5.50087 5.72658 6.20731 6.29118 6.34039 6.97331 7.36460 8.11504 8.37041 9.32029 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.012654 B = 0.002720 C = 0.002522 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2212.188712 B =10290.816897 C =11099.640787 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.050 4.050 3 C -0.115 4.115 4 C -0.077 4.077 5 C -0.148 4.148 6 C 0.556 3.444 7 O -0.561 6.561 8 N -0.595 5.595 9 C 0.066 3.934 10 C 0.120 3.880 11 C 0.047 3.953 12 O -0.388 6.388 13 C 0.066 3.934 14 C 0.154 3.846 15 N -0.739 5.739 16 C -0.247 4.247 17 H 0.075 0.925 18 C -0.075 4.075 19 N -0.968 5.968 20 Si 0.975 3.025 21 H -0.277 1.277 22 H -0.295 1.295 23 H -0.278 1.278 24 C -0.010 4.010 25 Cl -0.071 7.071 26 C -0.123 4.123 27 H 0.087 0.913 28 H 0.079 0.921 29 H 0.089 0.911 30 H 0.169 0.831 31 H 0.156 0.844 32 H 0.079 0.921 33 H 0.052 0.948 34 H 0.101 0.899 35 H 0.096 0.904 36 H 0.103 0.897 37 H 0.068 0.932 38 H 0.040 0.960 39 H 0.048 0.952 40 H 0.067 0.933 41 H 0.042 0.958 42 H 0.022 0.978 43 H 0.376 0.624 44 H 0.251 0.749 45 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.126 -4.557 18.091 26.718 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.051 4.051 3 C -0.133 4.133 4 C -0.095 4.095 5 C -0.152 4.152 6 C 0.345 3.655 7 O -0.441 6.441 8 N -0.326 5.326 9 C -0.076 4.076 10 C -0.003 4.003 11 C -0.031 4.031 12 O -0.308 6.308 13 C -0.010 4.010 14 C 0.027 3.973 15 N -0.382 5.382 16 C -0.379 4.379 17 H 0.093 0.907 18 C -0.267 4.267 19 N -0.619 5.619 20 Si 0.803 3.197 21 H -0.203 1.203 22 H -0.221 1.221 23 H -0.205 1.205 24 C -0.037 4.037 25 Cl -0.042 7.042 26 C -0.141 4.141 27 H 0.106 0.894 28 H 0.098 0.902 29 H 0.108 0.892 30 H 0.186 0.814 31 H 0.173 0.827 32 H 0.097 0.903 33 H 0.071 0.929 34 H 0.119 0.881 35 H 0.114 0.886 36 H 0.122 0.878 37 H 0.087 0.913 38 H 0.058 0.942 39 H 0.067 0.933 40 H 0.085 0.915 41 H 0.059 0.941 42 H 0.039 0.961 43 H 0.208 0.792 44 H 0.060 0.940 45 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -18.896 -4.840 18.310 26.753 hybrid contribution 0.961 -0.031 -0.744 1.216 sum -17.935 -4.870 17.566 25.572 Atomic orbital electron populations 1.20956 0.87709 1.04666 1.03965 1.20458 0.98325 0.91651 0.94657 1.21501 0.93028 0.99571 0.99193 1.21511 0.95334 0.96177 0.96521 1.19765 0.92717 0.94300 1.08387 1.18533 0.87626 0.78463 0.80895 1.90758 1.70191 1.44431 1.38675 1.47717 1.07334 1.45887 1.31711 1.22287 0.98210 0.94510 0.92562 1.21581 0.79573 0.99440 0.99684 1.22948 0.99255 0.97973 0.82898 1.87981 1.80982 1.44704 1.17114 1.22635 0.99151 0.90745 0.88504 1.20820 0.94998 0.89424 0.92047 1.42454 1.45084 1.31193 1.19457 1.19608 1.15925 1.07318 0.95050 0.90735 1.25569 0.99329 0.99476 1.02317 1.69828 1.28276 1.24730 1.39054 0.85201 0.77362 0.77469 0.79641 1.20262 1.22119 1.20459 1.21109 0.93263 0.86104 1.03264 1.98392 1.77534 1.31587 1.96664 1.21163 0.90398 1.00615 1.01928 0.89448 0.90249 0.89236 0.81375 0.82657 0.90281 0.92916 0.88114 0.88576 0.87845 0.91342 0.94179 0.93346 0.91519 0.94054 0.96054 0.79242 0.94042 0.82953 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.70 10.00 71.24 0.71 0.01 16 2 C -0.05 -0.63 5.89 -19.81 -0.12 -0.75 16 3 C -0.12 -1.38 9.68 22.23 0.22 -1.17 16 4 C -0.08 -1.29 7.34 22.53 0.17 -1.12 16 5 C -0.15 -3.54 5.05 -20.07 -0.10 -3.64 16 6 C 0.56 16.04 6.61 86.76 0.57 16.62 16 7 O -0.56 -19.43 15.68 -3.89 -0.06 -19.49 16 8 N -0.60 -16.03 2.84 -850.28 -2.41 -18.44 16 9 C 0.07 1.59 9.84 127.77 1.26 2.85 16 10 C 0.12 3.22 5.90 86.38 0.51 3.73 16 11 C 0.05 1.38 6.28 71.98 0.45 1.84 16 12 O -0.39 -13.89 9.17 -148.98 -1.37 -15.26 16 13 C 0.07 2.30 6.07 71.98 0.44 2.74 16 14 C 0.15 6.40 6.65 86.38 0.57 6.98 16 15 N -0.74 -38.82 5.55 -343.46 -1.91 -40.72 16 16 C -0.25 -14.06 9.99 84.03 0.84 -13.22 16 17 H 0.07 4.05 7.83 -2.91 -0.02 4.03 16 18 C -0.07 -4.33 5.50 84.86 0.47 -3.87 16 19 N -0.97 -59.82 13.06 21.65 0.28 -59.54 16 20 Si 0.97 46.23 29.55 68.60 2.03 48.26 16 21 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 22 H -0.29 -14.05 7.11 99.48 0.71 -13.34 16 23 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 24 C -0.01 -0.23 6.34 22.60 0.14 -0.09 16 25 Cl -0.07 -1.88 27.35 -2.72 -0.07 -1.95 16 26 C -0.12 -2.08 9.47 22.26 0.21 -1.87 16 27 H 0.09 0.44 8.14 -2.38 -0.02 0.42 16 28 H 0.08 0.38 8.08 -2.39 -0.02 0.36 16 29 H 0.09 0.28 8.08 -2.39 -0.02 0.26 16 30 H 0.17 0.91 8.06 -2.91 -0.02 0.88 16 31 H 0.16 2.04 7.11 -2.91 -0.02 2.02 16 32 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 33 H 0.05 1.59 7.27 -2.39 -0.02 1.57 16 34 H 0.10 1.95 3.92 -2.39 -0.01 1.94 16 35 H 0.10 2.49 8.07 -2.39 -0.02 2.47 16 36 H 0.10 2.65 7.35 -2.39 -0.02 2.63 16 37 H 0.07 1.84 8.14 -2.38 -0.02 1.82 16 38 H 0.04 1.23 8.14 -2.39 -0.02 1.21 16 39 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 40 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 41 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 42 H 0.02 0.91 8.14 -2.39 -0.02 0.89 16 43 H 0.38 21.14 7.67 -92.71 -0.71 20.43 16 44 H 0.25 15.00 8.31 -92.71 -0.77 14.23 16 45 H 0.15 2.02 8.06 -2.91 -0.02 1.99 16 Total: -1.00 -74.37 390.06 3.12 -71.25 By element: Atomic # 1 Polarization: 26.56 SS G_CDS: 0.29 Total: 26.85 kcal Atomic # 6 Polarization: 2.70 SS G_CDS: 6.34 Total: 9.04 kcal Atomic # 7 Polarization: -114.67 SS G_CDS: -4.04 Total: -118.70 kcal Atomic # 8 Polarization: -33.32 SS G_CDS: -1.43 Total: -34.75 kcal Atomic # 14 Polarization: 46.23 SS G_CDS: 2.03 Total: 48.26 kcal Atomic # 17 Polarization: -1.88 SS G_CDS: -0.07 Total: -1.95 kcal Total: -74.37 3.12 -71.25 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001486497853.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.590 kcal (2) G-P(sol) polarization free energy of solvation -74.375 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.785 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.122 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.253 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.663 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds