Wall clock time and date at job start Tue Mar 31 2020 23:45:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31630 * 1 3 3 Si 1.86800 * 120.00086 * 2 1 4 4 H 1.48501 * 109.46755 * 269.99737 * 3 2 1 5 5 H 1.48495 * 109.46931 * 29.99751 * 3 2 1 6 6 H 1.48500 * 109.46738 * 149.99993 * 3 2 1 7 7 C 1.38803 * 119.99849 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00074 * 179.97438 * 7 2 1 9 9 S 1.76199 * 119.99949 * 0.02562 * 7 2 1 10 10 C 1.81002 * 100.00182 * 179.97438 * 9 7 2 11 11 C 1.50703 * 109.47349 * 180.02562 * 10 9 7 12 12 O 1.21282 * 119.99654 * 359.97438 * 11 10 9 13 13 N 1.34775 * 119.99768 * 180.02562 * 11 10 9 14 14 C 1.46965 * 120.59545 * 359.71332 * 13 11 10 15 15 C 1.53813 * 108.39598 * 124.76221 * 14 13 11 16 16 N 1.46966 * 108.57925 * 49.63322 * 15 14 13 17 17 C 1.34775 * 120.58780 * 124.66789 * 16 15 14 18 18 O 1.21285 * 120.00117 * 179.97438 * 17 16 15 19 19 C 1.50700 * 120.00508 * 359.97438 * 17 16 15 20 20 H 1.09004 * 115.50970 * 34.62335 * 19 17 16 21 21 C 1.52994 * 117.43720 * 179.97438 * 19 17 16 22 22 H 1.09009 * 119.80644 * 354.34600 * 21 19 17 23 23 C 1.54487 * 118.06869 * 198.08490 * 21 19 17 24 24 O 1.44423 * 104.79827 * 321.12801 * 23 21 19 25 25 C 1.44430 * 105.27549 * 319.48535 * 24 23 21 26 26 C 1.53001 * 117.43379 * 249.34652 * 19 17 16 27 27 H 1.08996 * 119.80519 * 4.62975 * 26 19 17 28 28 C 1.46956 * 118.81544 * 304.64919 * 16 15 14 29 29 C 1.46966 * 120.58776 * 179.97438 * 13 11 10 30 30 H 0.97005 * 119.99878 * 0.02562 * 1 2 3 31 31 H 1.09005 * 109.46889 * 299.99975 * 10 9 7 32 32 H 1.09000 * 109.47231 * 59.99947 * 10 9 7 33 33 H 1.09001 * 109.60927 * 244.54271 * 14 13 11 34 34 H 1.08998 * 109.60919 * 5.05579 * 14 13 11 35 35 H 1.09005 * 109.74115 * 289.85025 * 15 14 13 36 36 H 1.08993 * 109.53327 * 169.30359 * 15 14 13 37 37 H 1.08998 * 110.37047 * 79.95541 * 23 21 19 38 38 H 1.08998 * 110.36934 * 202.29492 * 23 21 19 39 39 H 1.08999 * 110.36987 * 159.34801 * 25 24 23 40 40 H 1.08998 * 110.37496 * 281.57126 * 25 24 23 41 41 H 1.09003 * 109.60916 * 295.47896 * 28 16 15 42 42 H 1.09000 * 109.74956 * 175.05271 * 28 16 15 43 43 H 1.08993 * 109.61367 * 354.94730 * 29 13 11 44 44 H 1.09005 * 109.60527 * 115.45946 * 29 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4478 2.6526 0.7000 6 1 3.5479 1.4400 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0001 9 16 1.1292 -2.7280 0.0005 10 6 2.5157 -3.8915 0.0005 11 6 1.9872 -5.3028 -0.0001 12 8 0.7909 -5.5023 0.0000 13 7 2.8440 -6.3432 0.0003 14 6 4.2960 -6.1165 -0.0049 15 6 4.9078 -6.8602 1.1944 16 7 4.4066 -8.2417 1.1939 17 6 5.2633 -9.2821 1.1942 18 8 4.8381 -10.4180 1.1942 19 6 6.7498 -9.0342 1.1945 20 1 7.0796 -8.1584 1.7534 21 6 7.6685 -10.2576 1.1954 22 1 7.2412 -11.2561 1.2891 23 6 9.1411 -10.0606 1.6189 24 8 9.5232 -8.7915 1.0452 25 6 8.9266 -8.7735 -0.2700 26 6 7.5242 -9.3909 -0.0760 27 1 6.9866 -9.7355 -0.9593 28 6 2.9546 -8.4685 1.1934 29 6 2.3427 -7.7248 0.0003 30 1 -0.4850 0.8401 -0.0004 31 1 3.1243 -3.7315 -0.8895 32 1 3.1244 -3.7315 0.8905 33 1 4.7226 -6.4989 -0.9323 34 1 4.4999 -5.0492 0.0817 35 1 4.6170 -6.3659 2.1214 36 1 5.9940 -6.8650 1.1047 37 1 9.2220 -10.0255 2.7053 38 1 9.7619 -10.8612 1.2169 39 1 8.8430 -7.7497 -0.6347 40 1 9.5157 -9.3750 -0.9623 41 1 2.5248 -8.0887 2.1204 42 1 2.7484 -9.5351 1.1046 43 1 1.2565 -7.7199 0.0903 44 1 2.6333 -8.2192 -0.9267 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001490988595.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:45:23 Heat of formation + Delta-G solvation = -62.467089 kcal Electronic energy + Delta-G solvation = -27093.487562 eV Core-core repulsion = 23138.903209 eV Total energy + Delta-G solvation = -3954.584353 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.36902 -40.19439 -39.08672 -37.02400 -34.86030 -34.11453 -32.47002 -32.06781 -29.47119 -29.23515 -28.08316 -26.53437 -25.52058 -24.13810 -23.27732 -21.73465 -21.18560 -19.94613 -18.83452 -18.15165 -17.45155 -16.89317 -16.45165 -16.28611 -15.91097 -15.85843 -15.66614 -15.47560 -15.29589 -14.84180 -14.47433 -14.08401 -14.02238 -13.62100 -13.37218 -13.21533 -13.09688 -12.79381 -12.53181 -12.26580 -12.11365 -11.98163 -11.82430 -11.78612 -11.55560 -11.09904 -11.06414 -10.85764 -10.79436 -10.70728 -10.26243 -10.05344 -9.85250 -9.51071 -9.40925 -9.10589 -8.47508 -8.28250 -6.55515 -6.25701 -3.97010 1.99162 2.36678 2.86420 2.93963 3.09018 3.19461 3.22071 3.27241 3.37278 3.51187 3.92435 4.06743 4.15818 4.21559 4.34624 4.39772 4.50710 4.58777 4.75273 4.85045 4.88870 4.91059 4.99627 5.06250 5.09430 5.10234 5.17988 5.24013 5.26980 5.32235 5.37164 5.46294 5.52406 5.52473 5.65604 5.71678 5.79276 6.01986 6.10272 6.19604 6.44461 6.96480 7.40582 7.55258 7.76795 8.30702 8.43508 9.19581 10.81656 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.015975 B = 0.002390 C = 0.002128 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1752.347814 B =11711.354682 C =13154.699544 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.074 3.926 3 Si 0.919 3.081 4 H -0.277 1.277 5 H -0.282 1.282 6 H -0.272 1.272 7 C -0.536 4.536 8 H 0.073 0.927 9 S -0.060 6.060 10 C -0.151 4.151 11 C 0.536 3.464 12 O -0.513 6.513 13 N -0.622 5.622 14 C 0.095 3.905 15 C 0.089 3.911 16 N -0.605 5.605 17 C 0.549 3.451 18 O -0.540 6.540 19 C -0.148 4.148 20 H 0.129 0.871 21 C -0.166 4.166 22 H 0.137 0.863 23 C 0.071 3.929 24 O -0.372 6.372 25 C 0.072 3.928 26 C -0.171 4.171 27 H 0.130 0.870 28 C 0.098 3.902 29 C 0.101 3.899 30 H 0.269 0.731 31 H 0.090 0.910 32 H 0.090 0.910 33 H 0.073 0.927 34 H 0.104 0.896 35 H 0.080 0.920 36 H 0.099 0.901 37 H 0.099 0.901 38 H 0.075 0.925 39 H 0.100 0.900 40 H 0.076 0.924 41 H 0.076 0.924 42 H 0.103 0.897 43 H 0.107 0.893 44 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.824 -19.850 1.130 27.380 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.136 4.136 3 Si 0.745 3.255 4 H -0.203 1.203 5 H -0.207 1.207 6 H -0.197 1.197 7 C -0.684 4.684 8 H 0.091 0.909 9 S 0.167 5.833 10 C -0.302 4.302 11 C 0.324 3.676 12 O -0.386 6.386 13 N -0.359 5.359 14 C -0.029 4.029 15 C -0.034 4.034 16 N -0.338 5.338 17 C 0.337 3.663 18 O -0.417 6.417 19 C -0.169 4.169 20 H 0.147 0.853 21 C -0.185 4.185 22 H 0.154 0.846 23 C -0.006 4.006 24 O -0.291 6.291 25 C -0.005 4.005 26 C -0.190 4.190 27 H 0.147 0.853 28 C -0.025 4.025 29 C -0.023 4.023 30 H 0.079 0.921 31 H 0.108 0.892 32 H 0.108 0.892 33 H 0.092 0.908 34 H 0.122 0.878 35 H 0.099 0.901 36 H 0.118 0.882 37 H 0.117 0.883 38 H 0.093 0.907 39 H 0.118 0.882 40 H 0.094 0.906 41 H 0.094 0.906 42 H 0.121 0.879 43 H 0.125 0.875 44 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 16.761 -20.465 1.232 26.481 hybrid contribution 1.814 1.213 -0.110 2.185 sum 18.574 -19.252 1.123 26.775 Atomic orbital electron populations 1.70016 1.05969 1.27516 1.46710 1.24999 0.95033 0.99062 0.94491 0.86163 0.79410 0.81538 0.78366 1.20260 1.20745 1.19659 1.22843 0.94860 0.91559 1.59129 0.90908 1.85450 1.04819 0.96377 1.96703 1.23558 1.06646 0.95265 1.04722 1.20397 0.86210 0.86178 0.74821 1.90702 1.15126 1.85126 1.47684 1.48071 1.06150 1.05786 1.75922 1.22183 0.80622 1.02097 0.98001 1.22368 0.99971 0.81383 0.99704 1.47943 1.06646 1.06193 1.72989 1.19477 0.86844 0.84342 0.75596 1.90697 1.78890 1.21925 1.50195 1.22090 0.90471 1.01447 1.02872 0.85301 1.24048 0.95747 0.97236 1.01434 0.84568 1.23010 0.91017 0.86688 0.99886 1.89196 1.74086 1.36572 1.29249 1.22987 0.89227 1.02367 0.85910 1.24036 0.98208 1.04001 0.92749 0.85255 1.22067 0.78840 1.02385 0.99191 1.21892 1.01370 0.81423 0.97582 0.92139 0.89190 0.89174 0.90843 0.87766 0.90126 0.88243 0.88333 0.90656 0.88160 0.90622 0.90590 0.87859 0.87498 0.91379 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.73 13.22 55.49 0.73 -25.00 16 2 C 0.07 2.06 5.49 -17.43 -0.10 1.96 16 3 Si 0.92 20.93 29.55 -169.99 -5.02 15.90 16 4 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 5 H -0.28 -6.35 7.11 56.52 0.40 -5.94 16 6 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 7 C -0.54 -14.82 9.50 30.94 0.29 -14.53 16 8 H 0.07 1.89 7.80 -52.49 -0.41 1.48 16 9 S -0.06 -1.59 20.57 -107.50 -2.21 -3.80 16 10 C -0.15 -2.89 4.50 36.01 0.16 -2.73 16 11 C 0.54 9.61 7.72 -10.98 -0.08 9.53 16 12 O -0.51 -11.25 15.27 5.56 0.08 -11.16 16 13 N -0.62 -8.17 2.94 -172.24 -0.51 -8.67 16 14 C 0.10 0.89 6.54 -3.37 -0.02 0.87 16 15 C 0.09 0.71 6.48 -3.36 -0.02 0.69 16 16 N -0.60 -5.89 2.95 -172.24 -0.51 -6.40 16 17 C 0.55 5.75 7.48 -10.99 -0.08 5.67 16 18 O -0.54 -7.38 15.75 5.55 0.09 -7.29 16 19 C -0.15 -1.16 4.34 -91.77 -0.40 -1.56 16 20 H 0.13 0.90 6.71 -51.93 -0.35 0.56 16 21 C -0.17 -1.19 6.69 -89.03 -0.60 -1.78 16 22 H 0.14 1.07 7.82 -51.92 -0.41 0.67 16 23 C 0.07 0.42 7.53 37.94 0.29 0.71 16 24 O -0.37 -2.89 11.31 -35.23 -0.40 -3.29 16 25 C 0.07 0.41 7.53 37.92 0.29 0.69 16 26 C -0.17 -1.12 6.95 -89.04 -0.62 -1.74 16 27 H 0.13 0.84 8.14 -51.93 -0.42 0.42 16 28 C 0.10 1.03 6.59 -3.62 -0.02 1.01 16 29 C 0.10 1.18 6.59 -3.62 -0.02 1.16 16 30 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 31 H 0.09 1.58 7.90 -51.91 -0.41 1.17 16 32 H 0.09 1.56 7.73 -51.92 -0.40 1.16 16 33 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.10 0.94 5.91 -51.93 -0.31 0.63 16 35 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.10 0.57 5.64 -51.93 -0.29 0.27 16 37 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 39 H 0.10 0.47 8.14 -51.93 -0.42 0.05 16 40 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 41 H 0.08 0.82 8.14 -51.93 -0.42 0.39 16 42 H 0.10 1.10 7.00 -51.93 -0.36 0.74 16 43 H 0.11 1.40 6.99 -51.93 -0.36 1.04 16 44 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 LS Contribution 371.91 15.07 5.60 5.60 Total: -1.00 -35.85 371.91 -9.32 -45.17 By element: Atomic # 1 Polarization: 5.23 SS G_CDS: -6.24 Total: -1.01 kcal Atomic # 6 Polarization: 0.88 SS G_CDS: -0.94 Total: -0.06 kcal Atomic # 7 Polarization: -39.78 SS G_CDS: -0.28 Total: -40.06 kcal Atomic # 8 Polarization: -21.52 SS G_CDS: -0.23 Total: -21.75 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.90 kcal Atomic # 16 Polarization: -1.59 SS G_CDS: -2.21 Total: -3.80 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -35.85 -9.32 -45.17 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001490988595.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.298 kcal (2) G-P(sol) polarization free energy of solvation -35.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.149 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.169 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds