Wall clock time and date at job start Tue Mar 31 2020 23:48:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31634 * 1 3 3 Si 1.86799 * 119.99826 * 2 1 4 4 H 1.48505 * 109.46661 * 239.99906 * 3 2 1 5 5 H 1.48501 * 109.47391 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47355 * 119.99761 * 3 2 1 7 7 C 1.38803 * 120.00163 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99773 * 179.97438 * 7 2 1 9 9 S 1.76198 * 119.99710 * 0.02562 * 7 2 1 10 10 C 1.81000 * 99.99715 * 179.97438 * 9 7 2 11 11 C 1.50703 * 109.47389 * 179.97438 * 10 9 7 12 12 O 1.21283 * 119.99488 * 359.97438 * 11 10 9 13 13 N 1.34777 * 120.00290 * 180.02562 * 11 10 9 14 14 C 1.46498 * 119.99828 * 180.27728 * 13 11 10 15 15 C 1.50700 * 109.46769 * 179.72341 * 14 13 11 16 16 C 1.30999 * 120.00207 * 125.00304 * 15 14 13 17 17 C 1.50693 * 120.00369 * 179.97438 * 16 15 14 18 18 N 1.46506 * 109.47435 * 124.99562 * 17 16 15 19 19 C 1.34777 * 119.99870 * 180.02562 * 18 17 16 20 20 O 1.21607 * 120.00147 * 359.97438 * 19 18 17 21 21 C 1.47100 * 119.99351 * 180.02562 * 19 18 17 22 22 C 1.32092 * 118.87388 * 179.72762 * 21 19 18 23 23 C 1.50263 * 122.57910 * 180.14294 * 22 21 19 24 24 O 1.42898 * 110.14590 * 344.80789 * 23 22 21 25 25 C 1.43267 * 113.09721 * 50.32877 * 24 23 22 26 26 C 1.50422 * 118.88057 * 359.97438 * 21 19 18 27 27 H 0.96991 * 119.99795 * 0.02562 * 1 2 3 28 28 H 1.08998 * 109.47444 * 59.99749 * 10 9 7 29 29 H 1.09002 * 109.47411 * 300.00028 * 10 9 7 30 30 H 0.97001 * 119.99727 * 359.97438 * 13 11 10 31 31 H 1.09004 * 109.46963 * 299.72135 * 14 13 11 32 32 H 1.08994 * 109.47567 * 59.72287 * 14 13 11 33 33 H 1.08001 * 119.99875 * 304.98958 * 15 14 13 34 34 H 1.08008 * 119.99728 * 359.97438 * 16 15 14 35 35 H 1.08998 * 109.47390 * 244.99906 * 17 16 15 36 36 H 1.09003 * 109.47336 * 4.99504 * 17 16 15 37 37 H 0.97005 * 119.99636 * 359.97438 * 18 17 16 38 38 H 1.07997 * 118.70830 * 0.37372 * 22 21 19 39 39 H 1.08995 * 109.50575 * 224.49554 * 23 22 21 40 40 H 1.09003 * 109.07896 * 104.84822 * 23 22 21 41 41 H 1.09001 * 109.63530 * 171.47524 * 25 24 23 42 42 H 1.08994 * 109.64127 * 50.85770 * 25 24 23 43 43 H 1.08997 * 109.45303 * 283.35336 * 26 21 19 44 44 H 1.08992 * 109.45022 * 43.28906 * 26 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 3.1040 1.6963 -1.2126 5 1 1.2853 2.7465 -0.0006 6 1 3.1040 1.6965 1.2125 7 6 2.0104 -1.2020 0.0005 8 1 3.0904 -1.2020 0.0001 9 16 1.1294 -2.7279 0.0005 10 6 2.5159 -3.8914 0.0005 11 6 1.9876 -5.3027 0.0012 12 8 0.7913 -5.5023 0.0021 13 7 2.8444 -6.3431 0.0018 14 6 2.3306 -7.7150 -0.0037 15 6 3.4851 -8.6836 -0.0086 16 6 3.5693 -9.6071 0.9167 17 6 4.7234 -10.5761 0.9115 18 7 5.4025 -10.5338 2.2089 19 6 6.4720 -11.3219 2.4357 20 8 6.8731 -12.0685 1.5636 21 6 7.1534 -11.2798 3.7387 22 6 8.1961 -12.0656 3.9389 23 6 8.9515 -12.0924 5.2376 24 8 8.6154 -10.9491 6.0262 25 6 7.2024 -10.7559 6.1623 26 6 6.6356 -10.3474 4.7995 27 1 -0.4849 0.8400 -0.0004 28 1 3.1246 -3.7313 0.8905 29 1 3.1246 -3.7313 -0.8894 30 1 3.8011 -6.1834 0.0015 31 1 1.7226 -7.8789 0.8860 32 1 1.7214 -7.8714 -0.8939 33 1 4.2430 -8.6165 -0.7751 34 1 2.8114 -9.6741 1.6833 35 1 4.3508 -11.5840 0.7291 36 1 5.4257 -10.3005 0.1247 37 1 5.0827 -9.9380 2.9045 38 1 8.5206 -12.7115 3.1365 39 1 10.0226 -12.0900 5.0357 40 1 8.6888 -12.9982 5.7840 41 1 7.0088 -9.9681 6.8903 42 1 6.7355 -11.6846 6.4901 43 1 6.9439 -9.3278 4.5686 44 1 5.5474 -10.3995 4.8287 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001501697692.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:48:45 Heat of formation + Delta-G solvation = -119.239232 kcal Electronic energy + Delta-G solvation = -24913.465401 eV Core-core repulsion = 20956.419223 eV Total energy + Delta-G solvation = -3957.046178 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.31016 -40.61058 -39.74183 -37.53274 -35.95492 -34.88202 -34.57639 -33.76399 -32.05535 -31.15361 -28.85152 -27.66220 -26.95620 -25.13520 -24.32537 -22.35900 -21.86907 -21.00052 -19.83038 -19.43635 -18.63458 -17.87484 -17.57951 -17.32241 -16.86989 -16.82346 -16.69962 -16.47985 -16.20998 -15.95212 -15.77934 -15.10756 -15.03495 -14.70168 -14.63386 -14.45768 -14.37332 -13.82501 -13.66069 -13.52941 -13.29845 -13.18665 -13.16236 -12.85716 -12.62710 -12.53818 -12.22707 -11.88632 -11.73986 -11.32199 -11.12248 -11.10415 -10.69093 -10.52519 -10.29564 -10.26910 -10.08737 -9.94290 -8.65929 -8.33838 -6.11939 0.23471 0.80583 1.30068 1.44507 1.48910 1.59032 1.61074 2.12054 2.24450 2.28082 2.43130 2.93865 3.00246 3.33615 3.53814 3.56705 3.68342 3.85227 3.98549 4.00320 4.24414 4.27671 4.29431 4.32787 4.43574 4.49785 4.51464 4.52776 4.55835 4.64792 4.69141 4.79731 4.83114 4.96076 5.19376 5.28338 5.35456 5.42489 5.42681 5.54130 5.66168 6.10338 6.20353 6.43596 6.50255 7.07453 7.09286 7.23713 8.75031 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.013598 B = 0.001586 C = 0.001465 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2058.575037 B =17646.414816 C =19111.104612 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.014 3.986 3 Si 0.998 3.002 4 H -0.263 1.263 5 H -0.279 1.279 6 H -0.261 1.261 7 C -0.548 4.548 8 H 0.083 0.917 9 S -0.152 6.152 10 C -0.130 4.130 11 C 0.534 3.466 12 O -0.566 6.566 13 N -0.710 5.710 14 C 0.147 3.853 15 C -0.139 4.139 16 C -0.145 4.145 17 C 0.150 3.850 18 N -0.710 5.710 19 C 0.547 3.453 20 O -0.587 6.587 21 C -0.183 4.183 22 C -0.109 4.109 23 C 0.083 3.917 24 O -0.397 6.397 25 C 0.054 3.946 26 C -0.118 4.118 27 H 0.271 0.729 28 H 0.111 0.889 29 H 0.110 0.890 30 H 0.417 0.583 31 H 0.069 0.931 32 H 0.069 0.931 33 H 0.133 0.867 34 H 0.132 0.868 35 H 0.076 0.924 36 H 0.069 0.931 37 H 0.416 0.584 38 H 0.126 0.874 39 H 0.128 0.872 40 H 0.093 0.907 41 H 0.117 0.883 42 H 0.067 0.933 43 H 0.091 0.909 44 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.222 -26.308 10.785 33.771 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.191 4.191 3 Si 0.819 3.181 4 H -0.187 1.187 5 H -0.204 1.204 6 H -0.186 1.186 7 C -0.696 4.696 8 H 0.101 0.899 9 S 0.076 5.924 10 C -0.281 4.281 11 C 0.319 3.681 12 O -0.444 6.444 13 N -0.364 5.364 14 C 0.024 3.976 15 C -0.159 4.159 16 C -0.165 4.165 17 C 0.027 3.973 18 N -0.362 5.362 19 C 0.337 3.663 20 O -0.469 6.469 21 C -0.186 4.186 22 C -0.129 4.129 23 C 0.007 3.993 24 O -0.316 6.316 25 C -0.022 4.022 26 C -0.155 4.155 27 H 0.080 0.920 28 H 0.129 0.871 29 H 0.128 0.872 30 H 0.254 0.746 31 H 0.087 0.913 32 H 0.087 0.913 33 H 0.150 0.850 34 H 0.150 0.850 35 H 0.094 0.906 36 H 0.088 0.912 37 H 0.253 0.747 38 H 0.144 0.856 39 H 0.145 0.855 40 H 0.110 0.890 41 H 0.135 0.865 42 H 0.086 0.914 43 H 0.109 0.891 44 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 16.466 -26.952 10.242 33.203 hybrid contribution 1.381 1.285 -0.294 1.909 sum 17.847 -25.667 9.948 32.806 Atomic orbital electron populations 1.70174 1.07951 1.28661 1.47930 1.26120 0.95957 1.03291 0.93741 0.85017 0.77813 0.75757 0.79493 1.18740 1.20448 1.18601 1.23181 0.95371 0.92033 1.58965 0.89870 1.85570 1.10588 0.99228 1.97063 1.23379 1.03546 0.94325 1.06878 1.20067 0.86207 0.86683 0.75106 1.90699 1.17435 1.86091 1.50217 1.45722 1.10384 1.04776 1.75516 1.20376 0.95308 0.79387 1.02511 1.22856 0.98217 0.95066 0.99725 1.22884 0.98140 0.95848 0.99595 1.20330 0.92392 0.99267 0.85332 1.45839 1.30399 1.42851 1.17068 1.18803 0.80155 0.79377 0.87983 1.90774 1.66780 1.41844 1.47543 1.20954 0.99598 1.03092 0.94916 1.23919 0.93535 0.95592 0.99840 1.21780 1.00587 0.89727 0.87210 1.88138 1.24335 1.47790 1.71349 1.22850 0.80520 1.02679 0.96150 1.21139 1.02269 0.98707 0.93346 0.92002 0.87080 0.87217 0.74591 0.91298 0.91335 0.84963 0.85006 0.90616 0.91221 0.74652 0.85621 0.85475 0.88959 0.86475 0.91434 0.89083 0.87708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -55.53 13.22 21.65 0.29 -55.25 16 2 C 0.01 0.78 5.49 84.86 0.47 1.24 16 3 Si 1.00 43.08 29.55 68.60 2.03 45.11 16 4 H -0.26 -10.78 7.11 99.48 0.71 -10.07 16 5 H -0.28 -11.79 7.11 99.48 0.71 -11.08 16 6 H -0.26 -10.68 7.11 99.48 0.71 -9.97 16 7 C -0.55 -30.90 9.50 67.96 0.65 -30.25 16 8 H 0.08 4.33 7.80 -2.91 -0.02 4.31 16 9 S -0.15 -8.30 20.57 -56.49 -1.16 -9.46 16 10 C -0.13 -4.96 6.16 71.24 0.44 -4.53 16 11 C 0.53 18.73 7.85 87.66 0.69 19.42 16 12 O -0.57 -25.40 15.86 -3.04 -0.05 -25.45 16 13 N -0.71 -16.12 5.55 -466.79 -2.59 -18.71 16 14 C 0.15 2.80 6.11 85.63 0.52 3.33 16 15 C -0.14 -1.66 9.24 25.65 0.24 -1.42 16 16 C -0.15 -1.46 9.24 25.65 0.24 -1.22 16 17 C 0.15 1.83 6.11 85.63 0.52 2.35 16 18 N -0.71 -8.55 5.49 -470.45 -2.58 -11.13 16 19 C 0.55 9.62 7.73 86.57 0.67 10.29 16 20 O -0.59 -15.10 16.06 -4.05 -0.07 -15.16 16 21 C -0.18 -2.41 5.86 -18.59 -0.11 -2.52 16 22 C -0.11 -1.37 9.58 24.59 0.24 -1.13 16 23 C 0.08 0.70 7.04 71.10 0.50 1.20 16 24 O -0.40 -4.86 10.83 -148.98 -1.61 -6.47 16 25 C 0.05 0.40 6.88 72.03 0.50 0.90 16 26 C -0.12 -0.90 5.29 29.80 0.16 -0.75 16 27 H 0.27 15.37 8.31 -92.72 -0.77 14.60 16 28 H 0.11 3.77 8.14 -2.40 -0.02 3.75 16 29 H 0.11 3.76 8.14 -2.39 -0.02 3.74 16 30 H 0.42 6.67 8.46 -92.71 -0.78 5.89 16 31 H 0.07 1.40 7.79 -2.38 -0.02 1.38 16 32 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 33 H 0.13 1.31 7.84 -2.91 -0.02 1.28 16 34 H 0.13 1.11 7.84 -2.91 -0.02 1.08 16 35 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 36 H 0.07 0.96 7.79 -2.39 -0.02 0.94 16 37 H 0.42 2.94 6.77 -92.70 -0.63 2.31 16 38 H 0.13 1.81 7.29 -2.91 -0.02 1.79 16 39 H 0.13 0.71 8.14 -2.39 -0.02 0.69 16 40 H 0.09 0.46 8.14 -2.39 -0.02 0.44 16 41 H 0.12 0.54 8.14 -2.39 -0.02 0.52 16 42 H 0.07 0.37 8.09 -2.39 -0.02 0.35 16 43 H 0.09 0.70 8.14 -2.39 -0.02 0.68 16 44 H 0.10 0.38 7.31 -2.39 -0.02 0.36 16 Total: -1.00 -83.72 390.98 -0.42 -84.14 By element: Atomic # 1 Polarization: 15.85 SS G_CDS: -0.38 Total: 15.47 kcal Atomic # 6 Polarization: -8.80 SS G_CDS: 5.71 Total: -3.09 kcal Atomic # 7 Polarization: -80.20 SS G_CDS: -4.89 Total: -85.09 kcal Atomic # 8 Polarization: -45.36 SS G_CDS: -1.73 Total: -47.08 kcal Atomic # 14 Polarization: 43.08 SS G_CDS: 2.03 Total: 45.11 kcal Atomic # 16 Polarization: -8.30 SS G_CDS: -1.16 Total: -9.46 kcal Total: -83.72 -0.42 -84.14 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001501697692.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.099 kcal (2) G-P(sol) polarization free energy of solvation -83.717 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.816 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.423 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.140 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.239 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds