Wall clock time and date at job start Tue Mar 31 2020 23:48:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31634 * 1 3 3 Si 1.86803 * 119.99574 * 2 1 4 4 H 1.48495 * 109.46973 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.46950 * 300.00239 * 3 2 1 6 6 H 1.48503 * 109.47248 * 60.00028 * 3 2 1 7 7 C 1.38796 * 120.00189 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99934 * 179.97438 * 7 2 1 9 9 S 1.76193 * 119.99962 * 359.97438 * 7 2 1 10 10 C 1.81005 * 100.00054 * 179.97438 * 9 7 2 11 11 C 1.50691 * 109.47286 * 179.97438 * 10 9 7 12 12 O 1.21279 * 120.00386 * 359.97438 * 11 10 9 13 13 N 1.34786 * 120.00203 * 180.02562 * 11 10 9 14 14 C 1.46498 * 120.00496 * 180.02562 * 13 11 10 15 15 C 1.50697 * 109.47310 * 179.97438 * 14 13 11 16 16 C 1.30998 * 119.99805 * 127.00578 * 15 14 13 17 17 C 1.50693 * 120.00352 * 7.55806 * 16 15 14 18 18 N 1.46498 * 109.47446 * 127.15649 * 17 16 15 19 19 C 1.34777 * 120.00066 * 179.72196 * 18 17 16 20 20 O 1.21613 * 120.00276 * 0.02562 * 19 18 17 21 21 C 1.47105 * 119.99955 * 179.97438 * 19 18 17 22 22 C 1.32083 * 118.87567 * 179.73074 * 21 19 18 23 23 C 1.50273 * 122.57487 * 180.14878 * 22 21 19 24 24 O 1.42889 * 110.14697 * 344.80674 * 23 22 21 25 25 C 1.43272 * 113.10080 * 50.32763 * 24 23 22 26 26 C 1.50425 * 118.87559 * 0.02562 * 21 19 18 27 27 H 0.96998 * 120.00117 * 359.97438 * 1 2 3 28 28 H 1.09003 * 109.46936 * 59.99511 * 10 9 7 29 29 H 1.08997 * 109.47256 * 300.00456 * 10 9 7 30 30 H 0.97000 * 119.99724 * 359.97438 * 13 11 10 31 31 H 1.08998 * 109.47029 * 59.99363 * 14 13 11 32 32 H 1.09004 * 109.46462 * 300.00192 * 14 13 11 33 33 H 1.08003 * 119.99983 * 307.00032 * 15 14 13 34 34 H 1.08001 * 119.99443 * 187.55911 * 16 15 14 35 35 H 1.09007 * 109.47309 * 7.15467 * 17 16 15 36 36 H 1.09005 * 109.47365 * 247.15919 * 17 16 15 37 37 H 0.96996 * 119.99740 * 0.02562 * 18 17 16 38 38 H 1.08000 * 118.71150 * 0.37275 * 22 21 19 39 39 H 1.09003 * 109.49534 * 224.49495 * 23 22 21 40 40 H 1.09000 * 109.07457 * 104.84972 * 23 22 21 41 41 H 1.09000 * 109.63721 * 171.47299 * 25 24 23 42 42 H 1.09007 * 109.63676 * 50.86083 * 25 24 23 43 43 H 1.09001 * 109.45043 * 283.35258 * 26 21 19 44 44 H 1.09001 * 109.45293 * 43.28227 * 26 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3466 -0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8915 2.3965 1.2125 7 6 2.0104 -1.2020 -0.0005 8 1 3.0904 -1.2019 -0.0010 9 16 1.1294 -2.7279 -0.0005 10 6 2.5160 -3.8913 -0.0021 11 6 1.9877 -5.3026 -0.0017 12 8 0.7914 -5.5023 0.0000 13 7 2.8445 -6.3430 -0.0022 14 6 2.3309 -7.7150 -0.0024 15 6 3.4854 -8.6836 -0.0036 16 6 3.5489 -9.6281 0.9020 17 6 2.3891 -9.8546 1.8371 18 7 1.9941 -11.2647 1.7926 19 6 0.9745 -11.7033 2.5571 20 8 0.3820 -10.9286 3.2835 21 6 0.5775 -13.1191 2.5120 22 6 -0.4213 -13.5261 3.2744 23 6 -0.8932 -14.9526 3.2964 24 8 -0.3725 -15.6606 2.1698 25 6 1.0428 -15.5031 2.0119 26 6 1.3273 -14.0552 1.6040 27 1 -0.4850 0.8400 0.0004 28 1 3.1254 -3.7316 0.8874 29 1 3.1240 -3.7308 -0.8924 30 1 3.8013 -6.1834 -0.0032 31 1 1.7219 -7.8749 -0.8921 32 1 1.7225 -7.8752 0.8878 33 1 4.2603 -8.5992 -0.7511 34 1 4.4325 -10.2443 0.9784 35 1 1.5484 -9.2320 1.5309 36 1 2.6846 -9.5920 2.8529 37 1 2.4692 -11.8834 1.2162 38 1 -0.9207 -12.8046 3.9041 39 1 -1.9825 -14.9760 3.2662 40 1 -0.5467 -15.4283 4.2139 41 1 1.4024 -16.1796 1.2366 42 1 1.5433 -15.7229 2.9551 43 1 1.0050 -13.8982 0.5747 44 1 2.3965 -13.8589 1.6833 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001501697693.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:48:50 Heat of formation + Delta-G solvation = -81.844786 kcal Electronic energy + Delta-G solvation = -25173.615320 eV Core-core repulsion = 21218.190687 eV Total energy + Delta-G solvation = -3955.424633 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.66405 -39.35786 -39.08268 -36.93655 -34.81224 -34.24679 -32.85134 -32.41988 -31.61746 -29.61074 -27.68942 -26.20810 -25.53352 -25.07965 -24.17538 -21.76005 -20.45269 -19.85534 -18.66043 -18.09071 -17.64556 -17.18750 -16.68714 -16.25826 -16.15764 -15.79838 -15.54261 -15.39311 -15.11368 -14.79908 -14.61468 -14.25607 -14.00252 -13.89788 -13.77266 -13.32164 -13.19339 -13.07689 -12.93115 -12.61667 -12.49929 -12.12333 -11.83322 -11.40000 -11.22849 -11.06425 -11.01277 -10.75492 -10.68289 -10.15362 -9.89510 -9.79896 -9.67058 -9.42772 -9.31847 -9.06897 -8.81244 -8.22150 -6.49173 -6.20945 -3.91525 0.86492 1.43898 2.85410 2.88020 3.08942 3.10203 3.22160 3.29440 3.31305 3.35591 3.79008 4.07957 4.13361 4.20874 4.27315 4.28263 4.51846 4.59727 4.68129 4.79195 4.84895 4.94179 5.03035 5.10538 5.13733 5.14270 5.20678 5.29862 5.42173 5.49975 5.53307 5.74649 5.76044 5.89056 5.92067 5.97649 6.07675 6.13905 6.25992 6.48204 6.58604 7.09793 7.60479 7.68577 7.83934 8.36090 8.59894 9.24395 10.86547 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.027574 B = 0.001501 C = 0.001453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1015.196723 B =18644.226366 C =19272.252494 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.073 3.927 3 Si 0.919 3.081 4 H -0.272 1.272 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.535 4.535 8 H 0.073 0.927 9 S -0.060 6.060 10 C -0.153 4.153 11 C 0.531 3.469 12 O -0.516 6.516 13 N -0.735 5.735 14 C 0.133 3.867 15 C -0.140 4.140 16 C -0.165 4.165 17 C 0.132 3.868 18 N -0.721 5.721 19 C 0.549 3.451 20 O -0.535 6.535 21 C -0.170 4.170 22 C -0.110 4.110 23 C 0.084 3.916 24 O -0.376 6.376 25 C 0.059 3.941 26 C -0.120 4.120 27 H 0.268 0.732 28 H 0.090 0.910 29 H 0.090 0.910 30 H 0.399 0.601 31 H 0.076 0.924 32 H 0.080 0.920 33 H 0.125 0.875 34 H 0.123 0.877 35 H 0.088 0.912 36 H 0.078 0.922 37 H 0.401 0.599 38 H 0.138 0.862 39 H 0.115 0.885 40 H 0.075 0.925 41 H 0.103 0.897 42 H 0.058 0.942 43 H 0.090 0.910 44 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.172 -33.418 3.276 34.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.136 4.136 3 Si 0.746 3.254 4 H -0.196 1.196 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.684 4.684 8 H 0.091 0.909 9 S 0.166 5.834 10 C -0.303 4.303 11 C 0.317 3.683 12 O -0.389 6.389 13 N -0.390 5.390 14 C 0.010 3.990 15 C -0.159 4.159 16 C -0.184 4.184 17 C 0.010 3.990 18 N -0.373 5.373 19 C 0.337 3.663 20 O -0.413 6.413 21 C -0.173 4.173 22 C -0.130 4.130 23 C 0.007 3.993 24 O -0.295 6.295 25 C -0.017 4.017 26 C -0.157 4.157 27 H 0.078 0.922 28 H 0.108 0.892 29 H 0.108 0.892 30 H 0.233 0.767 31 H 0.094 0.906 32 H 0.098 0.902 33 H 0.142 0.858 34 H 0.140 0.860 35 H 0.106 0.894 36 H 0.097 0.903 37 H 0.236 0.764 38 H 0.156 0.844 39 H 0.133 0.867 40 H 0.093 0.907 41 H 0.121 0.879 42 H 0.076 0.924 43 H 0.108 0.892 44 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 6.452 -33.168 3.670 33.989 hybrid contribution 3.006 1.348 -0.159 3.298 sum 9.458 -31.820 3.511 33.381 Atomic orbital electron populations 1.70030 1.05955 1.27353 1.46916 1.24997 0.95025 0.99041 0.94543 0.86111 0.79561 0.81879 0.77899 1.19629 1.20572 1.20560 1.22911 0.94949 0.91648 1.58865 0.90861 1.85432 1.04888 0.96335 1.96710 1.23525 1.06603 0.95231 1.04970 1.20349 0.86518 0.86274 0.75154 1.90716 1.15369 1.85532 1.47330 1.45938 1.10036 1.04900 1.78143 1.20496 0.94655 0.80557 1.03317 1.23039 0.99197 0.96285 0.97370 1.22836 0.98478 1.00778 0.96309 1.20607 0.96489 0.82068 0.99862 1.45837 1.35183 1.10818 1.45442 1.18426 0.79826 0.88150 0.79861 1.90842 1.53632 1.56806 1.40042 1.20826 1.00538 0.93674 1.02281 1.23780 0.94381 0.98713 0.96107 1.21636 1.00184 0.87715 0.89721 1.88158 1.22199 1.70867 1.48251 1.22660 0.82054 0.95349 1.01678 1.21085 1.00148 0.94785 0.99695 0.92226 0.89160 0.89169 0.76712 0.90624 0.90195 0.85760 0.85961 0.89431 0.90350 0.76426 0.84434 0.86682 0.90721 0.87918 0.92400 0.89207 0.89667 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.37 13.22 55.49 0.73 -25.64 16 2 C 0.07 2.10 5.49 -17.43 -0.10 2.01 16 3 Si 0.92 21.52 29.55 -169.99 -5.02 16.49 16 4 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 5 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 6 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 7 C -0.54 -15.36 9.50 30.94 0.29 -15.07 16 8 H 0.07 1.99 7.80 -52.48 -0.41 1.58 16 9 S -0.06 -1.65 20.57 -107.50 -2.21 -3.87 16 10 C -0.15 -3.09 6.16 36.00 0.22 -2.87 16 11 C 0.53 10.01 7.85 -10.99 -0.09 9.92 16 12 O -0.52 -11.97 15.86 5.56 0.09 -11.88 16 13 N -0.74 -9.68 5.55 -61.48 -0.34 -10.02 16 14 C 0.13 1.52 5.76 -5.20 -0.03 1.49 16 15 C -0.14 -1.03 9.63 -36.03 -0.35 -1.37 16 16 C -0.16 -1.06 9.63 -36.03 -0.35 -1.41 16 17 C 0.13 1.17 5.76 -5.20 -0.03 1.14 16 18 N -0.72 -5.63 5.49 -62.67 -0.34 -5.97 16 19 C 0.55 5.77 7.73 -12.66 -0.10 5.67 16 20 O -0.54 -7.99 16.06 5.27 0.08 -7.90 16 21 C -0.17 -1.33 5.86 -103.08 -0.60 -1.94 16 22 C -0.11 -0.83 9.58 -36.44 -0.35 -1.18 16 23 C 0.08 0.46 7.04 35.80 0.25 0.71 16 24 O -0.38 -2.63 10.83 -35.23 -0.38 -3.02 16 25 C 0.06 0.26 6.88 37.21 0.26 0.52 16 26 C -0.12 -0.56 5.29 -27.97 -0.15 -0.71 16 27 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 28 H 0.09 1.68 8.14 -51.91 -0.42 1.26 16 29 H 0.09 1.67 8.14 -51.92 -0.42 1.24 16 30 H 0.40 3.97 8.46 -40.82 -0.35 3.63 16 31 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 32 H 0.08 1.03 5.30 -51.93 -0.28 0.76 16 33 H 0.12 0.69 8.06 -52.48 -0.42 0.27 16 34 H 0.12 0.52 8.06 -52.49 -0.42 0.09 16 35 H 0.09 0.98 5.30 -51.93 -0.28 0.70 16 36 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.40 1.88 6.77 -40.82 -0.28 1.61 16 38 H 0.14 1.16 7.29 -52.49 -0.38 0.78 16 39 H 0.12 0.48 8.14 -51.93 -0.42 0.05 16 40 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 41 H 0.10 0.28 8.14 -51.93 -0.42 -0.14 16 42 H 0.06 0.21 8.09 -51.93 -0.42 -0.21 16 43 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 44 H 0.08 0.22 7.30 -51.93 -0.38 -0.16 16 LS Contribution 386.49 15.07 5.82 5.82 Total: -1.00 -38.71 386.49 -8.81 -47.52 By element: Atomic # 1 Polarization: 7.66 SS G_CDS: -6.13 Total: 1.53 kcal Atomic # 6 Polarization: -1.96 SS G_CDS: -1.11 Total: -3.07 kcal Atomic # 7 Polarization: -41.68 SS G_CDS: 0.05 Total: -41.63 kcal Atomic # 8 Polarization: -22.59 SS G_CDS: -0.21 Total: -22.80 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.49 kcal Atomic # 16 Polarization: -1.65 SS G_CDS: -2.21 Total: -3.87 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -38.71 -8.81 -47.52 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001501697693.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.328 kcal (2) G-P(sol) polarization free energy of solvation -38.708 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.809 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.517 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.845 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds