Wall clock time and date at job start Tue Mar 31 2020 23:20:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86802 * 120.00035 * 2 1 4 4 H 1.48501 * 109.47092 * 269.99299 * 3 2 1 5 5 H 1.48499 * 109.47199 * 29.99453 * 3 2 1 6 6 H 1.48495 * 109.47275 * 149.99884 * 3 2 1 7 7 C 1.38800 * 119.99980 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00433 * 359.97438 * 7 2 1 9 9 S 1.76208 * 119.99817 * 180.02562 * 7 2 1 10 10 C 1.81004 * 99.99600 * 179.97438 * 9 7 2 11 11 C 1.50700 * 109.46906 * 179.97438 * 10 9 7 12 12 O 1.21287 * 120.00184 * 0.02562 * 11 10 9 13 13 N 1.34779 * 120.00080 * 179.97438 * 11 10 9 14 14 C 1.46503 * 119.99767 * 180.02562 * 13 11 10 15 15 C 1.50700 * 109.46822 * 180.02562 * 14 13 11 16 16 C 1.31002 * 119.99976 * 127.00285 * 15 14 13 17 17 C 1.50700 * 120.00022 * 7.56245 * 16 15 14 18 18 N 1.46500 * 109.47030 * 127.15527 * 17 16 15 19 19 C 1.34771 * 119.99658 * 180.02562 * 18 17 16 20 20 O 1.21737 * 120.00446 * 359.97438 * 19 18 17 21 21 C 1.41795 * 120.00027 * 179.97438 * 19 18 17 22 22 C 1.33455 * 118.79122 * 180.02562 * 21 19 18 23 23 O 1.34347 * 123.08289 * 180.41285 * 22 21 19 24 24 C 1.45358 * 117.48255 * 343.68132 * 23 22 21 25 25 C 1.53427 * 108.26721 * 47.45461 * 24 23 22 26 26 C 1.50418 * 118.78407 * 0.02562 * 21 19 18 27 27 H 0.97008 * 120.00111 * 0.02562 * 1 2 3 28 28 H 1.08994 * 109.47553 * 59.99798 * 10 9 7 29 29 H 1.08999 * 109.47455 * 299.99528 * 10 9 7 30 30 H 0.96993 * 119.99997 * 0.02562 * 13 11 10 31 31 H 1.08994 * 109.47188 * 60.00196 * 14 13 11 32 32 H 1.09005 * 109.46955 * 299.99997 * 14 13 11 33 33 H 1.07997 * 119.99966 * 307.00730 * 15 14 13 34 34 H 1.08004 * 119.99452 * 187.55387 * 16 15 14 35 35 H 1.08997 * 109.46983 * 7.15016 * 17 16 15 36 36 H 1.09003 * 109.46881 * 247.15372 * 17 16 15 37 37 H 0.96999 * 120.00149 * 359.97438 * 18 17 16 38 38 H 1.08002 * 118.45919 * 0.39949 * 22 21 19 39 39 H 1.09001 * 109.70752 * 167.16443 * 24 23 22 40 40 H 1.09005 * 109.69954 * 287.74225 * 24 23 22 41 41 H 1.09005 * 109.68207 * 177.61228 * 25 24 23 42 42 H 1.09003 * 109.70810 * 57.01055 * 25 24 23 43 43 H 1.08998 * 109.45488 * 282.35296 * 26 21 19 44 44 H 1.08997 * 109.45911 * 42.31852 * 26 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4979 2.0463 -1.4001 5 1 1.4477 2.6527 0.6999 6 1 3.5477 1.4402 0.7000 7 6 2.0102 -1.2020 0.0005 8 1 1.4703 -2.1374 0.0014 9 16 3.7723 -1.2020 0.0012 10 6 4.0865 -2.9845 0.0025 11 6 5.5730 -3.2325 0.0026 12 8 6.3440 -2.2963 0.0024 13 7 6.0456 -4.4947 0.0041 14 6 7.4907 -4.7357 0.0048 15 6 7.7524 -6.2198 0.0057 16 6 8.5389 -6.7469 -0.8997 17 6 9.3154 -5.8554 -1.8343 18 7 10.7340 -6.2184 -1.7893 19 6 11.6248 -5.5504 -2.5486 20 8 11.2507 -4.6458 -3.2723 21 6 12.9980 -5.9013 -2.5047 22 6 13.8592 -5.2236 -3.2663 23 8 15.1759 -5.4885 -3.2980 24 6 15.7242 -6.2945 -2.2198 25 6 14.8177 -7.5168 -2.0243 26 6 13.4302 -7.0238 -1.6015 27 1 -0.4851 0.8401 -0.0004 28 1 3.6439 -3.4322 -0.8872 29 1 3.6433 -3.4310 0.8927 30 1 5.4291 -5.2435 0.0047 31 1 7.9333 -4.2878 0.8944 32 1 7.9339 -4.2896 -0.8856 33 1 7.2915 -6.8489 0.7528 34 1 8.6309 -7.8203 -0.9762 35 1 9.1962 -4.8162 -1.5279 36 1 8.9405 -5.9799 -2.8503 37 1 11.0322 -6.9389 -1.2124 38 1 13.4798 -4.4248 -3.8863 39 1 16.7309 -6.6212 -2.4803 40 1 15.7542 -5.7081 -1.3013 41 1 15.2315 -8.1604 -1.2478 42 1 14.7412 -8.0711 -2.9597 43 1 13.4700 -6.6668 -0.5724 44 1 12.7157 -7.8438 -1.6739 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001501698761.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:20:24 Heat of formation + Delta-G solvation = -77.810337 kcal Electronic energy + Delta-G solvation = -25301.493941 eV Core-core repulsion = 21346.244255 eV Total energy + Delta-G solvation = -3955.249686 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.08432 -39.61084 -39.25747 -36.92617 -35.02793 -34.48244 -32.83954 -32.42185 -32.07523 -29.70476 -27.33329 -26.33767 -25.69706 -25.32147 -24.14068 -21.75574 -20.53749 -19.89853 -19.11189 -18.30069 -17.69865 -17.19206 -16.61798 -16.38759 -16.24858 -15.77898 -15.53197 -15.42669 -15.05170 -14.90455 -14.66377 -14.51425 -13.95125 -13.86181 -13.78306 -13.51614 -13.37632 -13.18484 -12.96389 -12.77765 -12.57523 -11.94597 -11.93778 -11.54948 -11.29939 -11.25233 -11.19531 -10.98748 -10.59574 -10.29808 -9.92925 -9.81407 -9.48458 -9.36795 -9.00983 -8.97819 -8.82637 -8.48101 -6.89979 -6.27347 -3.99000 0.97789 1.45490 2.64450 2.81651 2.98208 3.05172 3.17078 3.34965 3.41133 3.52921 3.72869 4.01317 4.08930 4.25323 4.28370 4.35185 4.52019 4.55040 4.64008 4.76142 4.83131 4.84961 4.87408 5.00342 5.11850 5.18065 5.21951 5.29073 5.40849 5.45688 5.47285 5.50899 5.65078 5.71807 5.78135 6.02159 6.03011 6.11269 6.27426 6.52316 6.67709 7.22843 7.60462 7.95659 7.98791 8.43010 8.49158 9.18975 10.81826 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.023179 B = 0.001607 C = 0.001533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1207.702268 B =17421.732975 C =18265.292383 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.096 3.904 3 Si 0.857 3.143 4 H -0.267 1.267 5 H -0.274 1.274 6 H -0.235 1.235 7 C -0.522 4.522 8 H 0.088 0.912 9 S -0.142 6.142 10 C -0.123 4.123 11 C 0.530 3.470 12 O -0.518 6.518 13 N -0.733 5.733 14 C 0.134 3.866 15 C -0.144 4.144 16 C -0.161 4.161 17 C 0.133 3.867 18 N -0.726 5.726 19 C 0.571 3.429 20 O -0.554 6.554 21 C -0.322 4.322 22 C 0.164 3.836 23 O -0.310 6.310 24 C 0.051 3.949 25 C -0.157 4.157 26 C -0.073 4.073 27 H 0.271 0.729 28 H 0.097 0.903 29 H 0.098 0.902 30 H 0.400 0.600 31 H 0.075 0.925 32 H 0.081 0.919 33 H 0.124 0.876 34 H 0.122 0.878 35 H 0.086 0.914 36 H 0.077 0.923 37 H 0.399 0.601 38 H 0.182 0.818 39 H 0.110 0.890 40 H 0.075 0.925 41 H 0.088 0.912 42 H 0.079 0.921 43 H 0.075 0.925 44 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 30.477 -22.430 -1.477 37.870 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.113 4.113 3 Si 0.681 3.319 4 H -0.192 1.192 5 H -0.199 1.199 6 H -0.159 1.159 7 C -0.669 4.669 8 H 0.106 0.894 9 S 0.085 5.915 10 C -0.274 4.274 11 C 0.316 3.684 12 O -0.392 6.392 13 N -0.388 5.388 14 C 0.011 3.989 15 C -0.163 4.163 16 C -0.181 4.181 17 C 0.011 3.989 18 N -0.378 5.378 19 C 0.362 3.638 20 O -0.435 6.435 21 C -0.327 4.327 22 C 0.096 3.904 23 O -0.220 6.220 24 C -0.023 4.023 25 C -0.195 4.195 26 C -0.110 4.110 27 H 0.080 0.920 28 H 0.116 0.884 29 H 0.116 0.884 30 H 0.234 0.766 31 H 0.093 0.907 32 H 0.099 0.901 33 H 0.142 0.858 34 H 0.140 0.860 35 H 0.104 0.896 36 H 0.095 0.905 37 H 0.234 0.766 38 H 0.198 0.802 39 H 0.128 0.872 40 H 0.094 0.906 41 H 0.106 0.894 42 H 0.098 0.902 43 H 0.094 0.906 44 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 31.492 -20.049 -2.124 37.393 hybrid contribution -1.212 -1.375 0.559 1.917 sum 30.279 -21.425 -1.565 37.125 Atomic orbital electron populations 1.69939 1.05915 1.27751 1.48103 1.24706 0.94447 0.98959 0.93156 0.86737 0.81890 0.83262 0.79976 1.19179 1.19947 1.15921 1.22322 0.88283 0.97542 1.58780 0.89383 1.84819 1.09252 1.00032 1.97426 1.23274 0.93862 1.04417 1.05854 1.20316 0.90652 0.82199 0.75266 1.90714 1.58750 1.42167 1.47589 1.45895 1.06910 1.08132 1.77822 1.20504 0.82347 0.92742 1.03336 1.23011 0.99470 0.96220 0.97589 1.22875 0.99193 0.99853 0.96155 1.20554 0.79695 0.98991 0.99694 1.45825 1.07501 1.38426 1.46050 1.16577 0.85746 0.81778 0.79713 1.90859 1.80959 1.30818 1.40887 1.19990 0.94596 1.06569 1.11513 1.23049 0.81538 0.92963 0.92838 1.86299 1.21174 1.67113 1.47411 1.23580 0.97618 0.91508 0.89591 1.22182 0.95848 0.97890 1.03548 1.20259 0.96644 0.95857 0.98239 0.91955 0.88431 0.88412 0.76550 0.90650 0.90096 0.85808 0.86014 0.89642 0.90476 0.76608 0.80159 0.87213 0.90647 0.89388 0.90247 0.90638 0.90338 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.74 13.97 55.49 0.78 -25.96 16 2 C 0.10 2.83 5.50 -17.43 -0.10 2.74 16 3 Si 0.86 22.05 27.74 -169.99 -4.72 17.34 16 4 H -0.27 -6.81 7.11 56.52 0.40 -6.40 16 5 H -0.27 -6.78 7.11 56.52 0.40 -6.38 16 6 H -0.24 -6.05 6.74 56.52 0.38 -5.67 16 7 C -0.52 -15.16 10.04 30.94 0.31 -14.85 16 8 H 0.09 2.66 8.03 -52.49 -0.42 2.23 16 9 S -0.14 -3.64 18.55 -107.50 -1.99 -5.64 16 10 C -0.12 -2.40 6.16 36.01 0.22 -2.18 16 11 C 0.53 9.52 7.85 -10.98 -0.09 9.43 16 12 O -0.52 -11.44 15.86 5.55 0.09 -11.35 16 13 N -0.73 -9.24 5.55 -61.47 -0.34 -9.58 16 14 C 0.13 1.48 5.76 -5.19 -0.03 1.45 16 15 C -0.14 -1.04 9.63 -36.03 -0.35 -1.38 16 16 C -0.16 -1.05 9.63 -36.03 -0.35 -1.39 16 17 C 0.13 1.19 5.76 -5.19 -0.03 1.16 16 18 N -0.73 -5.79 5.46 -64.36 -0.35 -6.14 16 19 C 0.57 5.98 7.53 -14.90 -0.11 5.87 16 20 O -0.55 -8.18 15.92 5.16 0.08 -8.09 16 21 C -0.32 -2.49 5.70 -105.07 -0.60 -3.09 16 22 C 0.16 1.29 10.46 29.06 0.30 1.59 16 23 O -0.31 -2.13 10.48 -14.88 -0.16 -2.29 16 24 C 0.05 0.19 7.15 37.38 0.27 0.45 16 25 C -0.16 -0.48 6.23 -26.40 -0.16 -0.65 16 26 C -0.07 -0.32 5.08 -27.91 -0.14 -0.46 16 27 H 0.27 7.64 8.31 -40.82 -0.34 7.30 16 28 H 0.10 1.76 8.14 -51.92 -0.42 1.34 16 29 H 0.10 1.75 8.14 -51.92 -0.42 1.32 16 30 H 0.40 3.81 8.46 -40.82 -0.35 3.47 16 31 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 32 H 0.08 1.01 5.29 -51.93 -0.27 0.74 16 33 H 0.12 0.68 8.06 -52.49 -0.42 0.26 16 34 H 0.12 0.54 8.06 -52.48 -0.42 0.11 16 35 H 0.09 0.95 5.30 -51.93 -0.28 0.67 16 36 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 37 H 0.40 2.02 6.57 -40.82 -0.27 1.75 16 38 H 0.18 1.49 7.21 -52.49 -0.38 1.11 16 39 H 0.11 0.18 8.14 -51.93 -0.42 -0.24 16 40 H 0.08 0.23 8.14 -51.93 -0.42 -0.19 16 41 H 0.09 0.11 8.14 -51.93 -0.42 -0.32 16 42 H 0.08 0.29 8.14 -51.93 -0.42 -0.14 16 43 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 44 H 0.08 0.26 7.15 -51.93 -0.37 -0.11 16 LS Contribution 382.66 15.07 5.77 5.77 Total: -1.00 -37.90 382.66 -7.84 -45.73 By element: Atomic # 1 Polarization: 7.66 SS G_CDS: -6.14 Total: 1.52 kcal Atomic # 6 Polarization: -0.45 SS G_CDS: -0.85 Total: -1.30 kcal Atomic # 7 Polarization: -41.77 SS G_CDS: 0.08 Total: -41.69 kcal Atomic # 8 Polarization: -21.75 SS G_CDS: 0.01 Total: -21.73 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -4.72 Total: 17.34 kcal Atomic # 16 Polarization: -3.64 SS G_CDS: -1.99 Total: -5.64 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -37.90 -7.84 -45.73 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001501698761.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.079 kcal (2) G-P(sol) polarization free energy of solvation -37.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.835 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.731 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.810 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds