Wall clock time and date at job start Tue Mar 31 2020 23:20:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86802 * 120.00035 * 2 1 4 4 H 1.48501 * 109.47092 * 269.99299 * 3 2 1 5 5 H 1.48499 * 109.47199 * 29.99453 * 3 2 1 6 6 H 1.48495 * 109.47275 * 149.99884 * 3 2 1 7 7 C 1.38800 * 119.99980 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00433 * 359.97438 * 7 2 1 9 9 S 1.76208 * 119.99817 * 180.02562 * 7 2 1 10 10 C 1.81004 * 99.99600 * 179.97438 * 9 7 2 11 11 C 1.50700 * 109.46906 * 179.97438 * 10 9 7 12 12 O 1.21287 * 120.00184 * 0.02562 * 11 10 9 13 13 N 1.34779 * 120.00080 * 179.97438 * 11 10 9 14 14 C 1.46503 * 119.99767 * 180.02562 * 13 11 10 15 15 C 1.50700 * 109.46822 * 180.02562 * 14 13 11 16 16 C 1.31002 * 119.99976 * 127.00285 * 15 14 13 17 17 C 1.50700 * 120.00022 * 7.56245 * 16 15 14 18 18 N 1.46500 * 109.47030 * 127.15527 * 17 16 15 19 19 C 1.34771 * 119.99658 * 180.02562 * 18 17 16 20 20 O 1.21737 * 120.00446 * 359.97438 * 19 18 17 21 21 C 1.41795 * 120.00027 * 179.97438 * 19 18 17 22 22 C 1.33455 * 118.79122 * 180.02562 * 21 19 18 23 23 O 1.34347 * 123.08289 * 180.41285 * 22 21 19 24 24 C 1.45358 * 117.48255 * 343.68132 * 23 22 21 25 25 C 1.53427 * 108.26721 * 47.45461 * 24 23 22 26 26 C 1.50418 * 118.78407 * 0.02562 * 21 19 18 27 27 H 0.97008 * 120.00111 * 0.02562 * 1 2 3 28 28 H 1.08994 * 109.47553 * 59.99798 * 10 9 7 29 29 H 1.08999 * 109.47455 * 299.99528 * 10 9 7 30 30 H 0.96993 * 119.99997 * 0.02562 * 13 11 10 31 31 H 1.08994 * 109.47188 * 60.00196 * 14 13 11 32 32 H 1.09005 * 109.46955 * 299.99997 * 14 13 11 33 33 H 1.07997 * 119.99966 * 307.00730 * 15 14 13 34 34 H 1.08004 * 119.99452 * 187.55387 * 16 15 14 35 35 H 1.08997 * 109.46983 * 7.15016 * 17 16 15 36 36 H 1.09003 * 109.46881 * 247.15372 * 17 16 15 37 37 H 0.96999 * 120.00149 * 359.97438 * 18 17 16 38 38 H 1.08002 * 118.45919 * 0.39949 * 22 21 19 39 39 H 1.09001 * 109.70752 * 167.16443 * 24 23 22 40 40 H 1.09005 * 109.69954 * 287.74225 * 24 23 22 41 41 H 1.09005 * 109.68207 * 177.61228 * 25 24 23 42 42 H 1.09003 * 109.70810 * 57.01055 * 25 24 23 43 43 H 1.08998 * 109.45488 * 282.35296 * 26 21 19 44 44 H 1.08997 * 109.45911 * 42.31852 * 26 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4979 2.0463 -1.4001 5 1 1.4477 2.6527 0.6999 6 1 3.5477 1.4402 0.7000 7 6 2.0102 -1.2020 0.0005 8 1 1.4703 -2.1374 0.0014 9 16 3.7723 -1.2020 0.0012 10 6 4.0865 -2.9845 0.0025 11 6 5.5730 -3.2325 0.0026 12 8 6.3440 -2.2963 0.0024 13 7 6.0456 -4.4947 0.0041 14 6 7.4907 -4.7357 0.0048 15 6 7.7524 -6.2198 0.0057 16 6 8.5389 -6.7469 -0.8997 17 6 9.3154 -5.8554 -1.8343 18 7 10.7340 -6.2184 -1.7893 19 6 11.6248 -5.5504 -2.5486 20 8 11.2507 -4.6458 -3.2723 21 6 12.9980 -5.9013 -2.5047 22 6 13.8592 -5.2236 -3.2663 23 8 15.1759 -5.4885 -3.2980 24 6 15.7242 -6.2945 -2.2198 25 6 14.8177 -7.5168 -2.0243 26 6 13.4302 -7.0238 -1.6015 27 1 -0.4851 0.8401 -0.0004 28 1 3.6439 -3.4322 -0.8872 29 1 3.6433 -3.4310 0.8927 30 1 5.4291 -5.2435 0.0047 31 1 7.9333 -4.2878 0.8944 32 1 7.9339 -4.2896 -0.8856 33 1 7.2915 -6.8489 0.7528 34 1 8.6309 -7.8203 -0.9762 35 1 9.1962 -4.8162 -1.5279 36 1 8.9405 -5.9799 -2.8503 37 1 11.0322 -6.9389 -1.2124 38 1 13.4798 -4.4248 -3.8863 39 1 16.7309 -6.6212 -2.4803 40 1 15.7542 -5.7081 -1.3013 41 1 15.2315 -8.1604 -1.2478 42 1 14.7412 -8.0711 -2.9597 43 1 13.4700 -6.6668 -0.5724 44 1 12.7157 -7.8438 -1.6739 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001501698761.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:20:23 Heat of formation + Delta-G solvation = -107.138203 kcal Electronic energy + Delta-G solvation = -25302.765693 eV Core-core repulsion = 21346.244255 eV Total energy + Delta-G solvation = -3956.521438 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.68511 -40.72143 -40.17078 -37.78827 -35.86341 -35.18069 -34.67851 -33.71632 -32.56907 -31.11619 -28.21017 -27.82595 -26.71417 -26.27677 -24.66307 -22.39059 -21.87867 -20.62614 -19.97774 -19.49145 -18.77800 -18.00330 -17.82815 -17.22496 -17.10526 -16.96930 -16.75606 -16.48564 -16.13230 -16.04507 -15.63327 -15.24538 -14.98833 -14.94941 -14.80185 -14.51176 -14.39152 -14.17281 -13.95473 -13.66021 -13.49614 -13.35524 -13.19391 -13.01873 -12.65707 -12.31399 -11.95451 -11.86159 -11.79994 -11.63087 -11.17986 -11.16609 -11.04412 -10.54276 -10.47135 -10.31821 -9.88199 -9.48984 -9.00639 -8.52230 -6.23057 0.32815 0.79296 1.03552 1.30785 1.46945 1.53987 1.57407 2.15400 2.23866 2.30603 2.35818 2.56682 2.73772 2.86131 3.61464 3.71427 3.74640 3.87338 3.94943 3.96468 4.10221 4.19175 4.23256 4.26163 4.37018 4.41701 4.46529 4.58273 4.65976 4.70518 4.74135 4.92531 4.94740 5.08017 5.18683 5.22556 5.30061 5.38799 5.46659 5.70269 5.71367 6.10812 6.18165 6.45958 6.57940 6.93232 7.17782 7.25363 8.60047 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.023179 B = 0.001607 C = 0.001533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1207.702268 B =17421.732975 C =18265.292383 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.047 3.953 3 Si 0.913 3.087 4 H -0.264 1.264 5 H -0.258 1.258 6 H -0.238 1.238 7 C -0.528 4.528 8 H 0.064 0.936 9 S -0.181 6.181 10 C -0.110 4.110 11 C 0.532 3.468 12 O -0.566 6.566 13 N -0.706 5.706 14 C 0.130 3.870 15 C -0.141 4.141 16 C -0.141 4.141 17 C 0.129 3.871 18 N -0.709 5.709 19 C 0.562 3.438 20 O -0.609 6.609 21 C -0.327 4.327 22 C 0.162 3.838 23 O -0.322 6.322 24 C 0.041 3.959 25 C -0.152 4.152 26 C -0.072 4.072 27 H 0.277 0.723 28 H 0.114 0.886 29 H 0.118 0.882 30 H 0.420 0.580 31 H 0.067 0.933 32 H 0.063 0.937 33 H 0.155 0.845 34 H 0.158 0.842 35 H 0.059 0.941 36 H 0.064 0.936 37 H 0.416 0.584 38 H 0.165 0.835 39 H 0.131 0.869 40 H 0.082 0.918 41 H 0.115 0.885 42 H 0.073 0.927 43 H 0.086 0.914 44 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 32.251 -25.306 -0.302 40.996 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.158 4.158 3 Si 0.735 3.265 4 H -0.189 1.189 5 H -0.182 1.182 6 H -0.162 1.162 7 C -0.676 4.676 8 H 0.082 0.918 9 S 0.046 5.954 10 C -0.260 4.260 11 C 0.318 3.682 12 O -0.445 6.445 13 N -0.360 5.360 14 C 0.007 3.993 15 C -0.160 4.160 16 C -0.159 4.159 17 C 0.006 3.994 18 N -0.362 5.362 19 C 0.355 3.645 20 O -0.494 6.494 21 C -0.331 4.331 22 C 0.093 3.907 23 O -0.232 6.232 24 C -0.032 4.032 25 C -0.189 4.189 26 C -0.109 4.109 27 H 0.086 0.914 28 H 0.133 0.867 29 H 0.136 0.864 30 H 0.257 0.743 31 H 0.085 0.915 32 H 0.081 0.919 33 H 0.173 0.827 34 H 0.176 0.824 35 H 0.077 0.923 36 H 0.082 0.918 37 H 0.255 0.745 38 H 0.182 0.818 39 H 0.149 0.851 40 H 0.101 0.899 41 H 0.133 0.867 42 H 0.092 0.908 43 H 0.105 0.895 44 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 33.265 -23.028 -0.912 40.468 hybrid contribution -1.672 -0.641 0.158 1.798 sum 31.593 -23.669 -0.754 39.483 Atomic orbital electron populations 1.70009 1.07222 1.29001 1.49122 1.25528 0.95253 1.02140 0.92893 0.85892 0.80689 0.79784 0.80160 1.18861 1.18171 1.16209 1.22456 0.90119 0.96762 1.58270 0.91770 1.84786 1.06603 1.06433 1.97601 1.23263 0.95609 0.99489 1.07684 1.20043 0.89535 0.83382 0.75275 1.90704 1.59429 1.44002 1.50329 1.45650 1.08293 1.06815 1.75225 1.20594 0.80647 0.95837 1.02191 1.22936 1.00544 0.93635 0.98919 1.22954 0.97737 1.00937 0.94319 1.20494 0.80626 0.98511 0.99790 1.45677 1.06865 1.38243 1.45440 1.17085 0.87094 0.81152 0.79172 1.90829 1.81947 1.33297 1.43301 1.20094 0.92970 1.07778 1.12297 1.22902 0.82305 0.92761 0.92709 1.86281 1.20370 1.67764 1.48802 1.23930 0.98642 0.91577 0.89053 1.22189 0.94854 0.97699 1.04168 1.20366 0.97841 0.94911 0.97832 0.91354 0.86749 0.86395 0.74280 0.91499 0.91909 0.82722 0.82441 0.92279 0.91766 0.74539 0.81828 0.85063 0.89949 0.86687 0.90786 0.89529 0.88898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -56.11 13.97 21.65 0.30 -55.81 16 2 C 0.05 2.81 5.50 84.86 0.47 3.28 16 3 Si 0.91 45.77 27.74 68.60 1.90 47.67 16 4 H -0.26 -12.99 7.11 99.48 0.71 -12.28 16 5 H -0.26 -12.05 7.11 99.48 0.71 -11.34 16 6 H -0.24 -11.98 6.74 99.48 0.67 -11.31 16 7 C -0.53 -31.08 10.04 67.95 0.68 -30.40 16 8 H 0.06 3.95 8.03 -2.91 -0.02 3.93 16 9 S -0.18 -9.32 18.55 -56.49 -1.05 -10.36 16 10 C -0.11 -4.15 6.16 71.24 0.44 -3.71 16 11 C 0.53 18.66 7.85 87.66 0.69 19.34 16 12 O -0.57 -25.21 15.86 -3.05 -0.05 -25.26 16 13 N -0.71 -16.43 5.55 -466.77 -2.59 -19.02 16 14 C 0.13 2.70 5.76 85.63 0.49 3.20 16 15 C -0.14 -1.56 9.63 25.64 0.25 -1.31 16 16 C -0.14 -1.36 9.63 25.64 0.25 -1.11 16 17 C 0.13 2.22 5.76 85.63 0.49 2.72 16 18 N -0.71 -10.58 5.46 -475.75 -2.60 -13.17 16 19 C 0.56 12.03 7.53 85.12 0.64 12.67 16 20 O -0.61 -19.22 15.92 -4.47 -0.07 -19.29 16 21 C -0.33 -4.94 5.70 -20.16 -0.11 -5.06 16 22 C 0.16 2.65 10.46 66.74 0.70 3.35 16 23 O -0.32 -4.32 10.48 -76.16 -0.80 -5.12 16 24 C 0.04 0.22 7.15 72.13 0.52 0.74 16 25 C -0.15 -0.52 6.23 30.81 0.19 -0.32 16 26 C -0.07 -0.46 5.08 29.83 0.15 -0.31 16 27 H 0.28 15.70 8.31 -92.70 -0.77 14.93 16 28 H 0.11 3.96 8.14 -2.40 -0.02 3.94 16 29 H 0.12 4.01 8.14 -2.40 -0.02 3.99 16 30 H 0.42 6.64 8.46 -92.71 -0.78 5.85 16 31 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 32 H 0.06 1.59 5.29 -2.38 -0.01 1.58 16 33 H 0.16 0.90 8.06 -2.91 -0.02 0.87 16 34 H 0.16 0.55 8.06 -2.91 -0.02 0.53 16 35 H 0.06 1.36 5.30 -2.39 -0.01 1.35 16 36 H 0.06 1.28 8.14 -2.39 -0.02 1.27 16 37 H 0.42 3.12 6.57 -92.71 -0.61 2.51 16 38 H 0.16 3.10 7.21 -2.91 -0.02 3.08 16 39 H 0.13 0.11 8.14 -2.39 -0.02 0.10 16 40 H 0.08 0.34 8.14 -2.38 -0.02 0.32 16 41 H 0.11 -0.18 8.14 -2.38 -0.02 -0.20 16 42 H 0.07 0.36 8.14 -2.39 -0.02 0.34 16 43 H 0.09 0.38 8.14 -2.39 -0.02 0.36 16 44 H 0.09 0.31 7.15 -2.39 -0.02 0.30 16 Total: -1.00 -86.18 382.66 0.50 -85.68 By element: Atomic # 1 Polarization: 12.00 SS G_CDS: -0.39 Total: 11.61 kcal Atomic # 6 Polarization: -2.77 SS G_CDS: 5.84 Total: 3.07 kcal Atomic # 7 Polarization: -83.12 SS G_CDS: -4.89 Total: -88.01 kcal Atomic # 8 Polarization: -48.75 SS G_CDS: -0.92 Total: -49.67 kcal Atomic # 14 Polarization: 45.77 SS G_CDS: 1.90 Total: 47.67 kcal Atomic # 16 Polarization: -9.32 SS G_CDS: -1.05 Total: -10.36 kcal Total: -86.18 0.50 -85.68 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001501698761.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.456 kcal (2) G-P(sol) polarization free energy of solvation -86.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.503 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.682 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.138 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds