Wall clock time and date at job start Tue Mar 31 2020 23:16:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86795 * 120.00464 * 2 1 4 4 H 1.48498 * 109.47201 * 270.00314 * 3 2 1 5 5 H 1.48504 * 109.47085 * 30.00319 * 3 2 1 6 6 H 1.48507 * 109.47440 * 149.99780 * 3 2 1 7 7 C 1.38806 * 119.99702 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00180 * 0.02562 * 7 2 1 9 9 S 1.76196 * 119.99917 * 180.02562 * 7 2 1 10 10 C 1.81001 * 99.99988 * 179.97438 * 9 7 2 11 11 C 1.50701 * 109.47301 * 179.97438 * 10 9 7 12 12 O 1.21288 * 119.99675 * 0.02562 * 11 10 9 13 13 N 1.34773 * 120.00203 * 179.97438 * 11 10 9 14 14 C 1.47418 * 125.64700 * 0.06380 * 13 11 10 15 15 C 1.54915 * 104.83107 * 204.07770 * 14 13 11 16 16 H 1.09002 * 111.00539 * 81.06145 * 15 14 13 17 17 O 1.42903 * 111.03771 * 204.89809 * 15 14 13 18 18 C 1.55154 * 101.58176 * 322.98725 * 15 14 13 19 19 H 1.08997 * 110.72125 * 276.96414 * 18 15 14 20 20 N 1.46497 * 110.72310 * 153.86360 * 18 15 14 21 21 C 1.34776 * 120.00404 * 155.00031 * 20 18 15 22 22 O 1.21618 * 119.99555 * 0.02562 * 21 20 18 23 23 C 1.47098 * 120.00442 * 180.02562 * 21 20 18 24 24 C 1.32996 * 120.00192 * 180.02562 * 23 21 20 25 25 C 1.51396 * 136.31372 * 359.62904 * 24 23 21 26 26 C 1.53382 * 87.51538 * 206.05541 * 25 24 23 27 27 C 1.51402 * 136.31210 * 179.97438 * 24 23 21 28 28 C 1.47029 * 125.64802 * 180.02562 * 13 11 10 29 29 H 0.97007 * 119.99644 * 359.97438 * 1 2 3 30 30 H 1.09000 * 109.47083 * 59.99875 * 10 9 7 31 31 H 1.08997 * 109.46938 * 299.99872 * 10 9 7 32 32 H 1.08995 * 110.37279 * 85.24185 * 14 13 11 33 33 H 1.08997 * 110.36990 * 322.91383 * 14 13 11 34 34 H 0.96698 * 114.00266 * 295.39754 * 17 15 14 35 35 H 0.96996 * 119.99952 * 335.00231 * 20 18 15 36 36 H 1.07999 * 119.99569 * 359.97438 * 23 21 20 37 37 H 1.08997 * 113.56236 * 320.63624 * 25 24 23 38 38 H 1.09003 * 113.56410 * 91.37523 * 25 24 23 39 39 H 1.09000 * 113.96564 * 220.28857 * 26 25 24 40 40 H 1.09005 * 113.59505 * 88.79873 * 26 25 24 41 41 H 1.09003 * 113.56258 * 268.62384 * 27 24 23 42 42 H 1.08995 * 113.56314 * 39.36300 * 27 24 23 43 43 H 1.08993 * 109.88066 * 59.57140 * 28 13 11 44 44 H 1.09003 * 109.87770 * 298.40799 * 28 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.4978 2.0463 -1.4000 5 1 1.4479 2.6526 0.7001 6 1 3.5479 1.4400 0.7001 7 6 2.0102 -1.2021 -0.0005 8 1 1.4702 -2.1374 -0.0014 9 16 3.7721 -1.2022 0.0001 10 6 4.0864 -2.9847 -0.0001 11 6 5.5728 -3.2328 -0.0002 12 8 6.3439 -2.2965 0.0003 13 7 6.0454 -4.4950 0.0001 14 6 5.2248 -5.7196 -0.0008 15 6 6.1393 -6.8102 0.6109 16 1 6.1442 -6.7507 1.6993 17 8 5.7471 -8.1130 0.1737 18 6 7.5227 -6.4205 0.0264 19 1 7.6431 -6.8218 -0.9798 20 7 8.6036 -6.8836 0.9000 21 6 9.8302 -7.1131 0.3908 22 8 10.0397 -6.9352 -0.7939 23 6 10.9155 -7.5786 1.2678 24 6 12.1260 -7.8046 0.7654 25 6 12.7794 -7.7173 -0.5975 26 6 13.7725 -8.7823 -0.1157 27 6 13.4639 -8.2697 1.3000 28 6 7.4648 -4.8785 0.0005 29 1 -0.4850 0.8401 0.0004 30 1 3.6438 -3.4315 -0.8904 31 1 3.6431 -3.4319 0.8896 32 1 4.9441 -5.9875 -1.0193 33 1 4.3358 -5.5811 0.6146 34 1 4.8676 -8.3804 0.4738 35 1 8.4366 -7.0252 1.8449 36 1 10.7294 -7.7362 2.3200 37 1 12.1383 -8.0578 -1.4106 38 1 13.2408 -6.7505 -0.7984 39 1 14.8000 -8.6057 -0.4336 40 1 13.4386 -9.8040 -0.2969 41 1 14.1130 -7.4543 1.6192 42 1 13.3842 -9.0632 2.0430 43 1 7.9578 -4.4739 0.8844 44 1 7.9501 -4.5045 -0.9010 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001512916330.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:16:01 Heat of formation + Delta-G solvation = -68.940162 kcal Electronic energy + Delta-G solvation = -26237.146126 eV Core-core repulsion = 22282.281080 eV Total energy + Delta-G solvation = -3954.865046 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.67935 -39.75205 -38.69479 -37.90717 -35.80554 -34.47636 -32.46899 -31.64386 -30.43549 -29.08286 -28.00343 -26.19682 -25.64978 -24.30813 -23.30228 -21.61956 -21.03941 -19.62507 -18.72924 -18.08335 -17.76025 -17.21706 -17.06968 -16.15205 -15.92738 -15.87234 -15.47393 -15.02349 -15.00012 -14.81213 -14.47630 -14.17571 -13.99885 -13.75788 -13.26134 -13.01568 -12.88504 -12.82733 -12.77391 -12.41424 -12.30640 -12.13799 -11.97231 -11.44048 -11.29753 -11.14839 -11.02831 -10.98452 -10.75209 -10.65402 -10.01429 -9.89568 -9.72808 -9.61593 -9.34550 -9.03016 -8.72062 -8.53590 -6.95918 -6.31720 -4.04011 0.98323 2.45865 2.77543 2.87175 2.98694 3.09676 3.31766 3.48571 3.51061 3.67453 3.87683 4.03722 4.08148 4.28784 4.30986 4.31584 4.55698 4.65158 4.67233 4.73298 4.89920 4.98661 5.07307 5.07494 5.10924 5.19161 5.24709 5.24914 5.38722 5.48030 5.51608 5.60448 5.65281 5.72379 5.78213 5.83422 5.93688 6.04828 6.19283 6.20785 7.13667 7.16705 7.41663 7.91160 7.93896 8.33316 8.38221 9.14405 10.77363 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.023791 B = 0.001977 C = 0.001863 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1176.622173 B =14159.180698 C =15024.717962 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.879 5.879 2 C 0.096 3.904 3 Si 0.856 3.144 4 H -0.267 1.267 5 H -0.274 1.274 6 H -0.235 1.235 7 C -0.522 4.522 8 H 0.088 0.912 9 S -0.141 6.141 10 C -0.118 4.118 11 C 0.548 3.452 12 O -0.512 6.512 13 N -0.622 5.622 14 C 0.071 3.929 15 C 0.086 3.914 16 H 0.082 0.918 17 O -0.550 6.550 18 C 0.145 3.855 19 H 0.117 0.883 20 N -0.716 5.716 21 C 0.554 3.446 22 O -0.536 6.536 23 C -0.202 4.202 24 C -0.057 4.057 25 C -0.108 4.108 26 C -0.143 4.143 27 C -0.109 4.109 28 C 0.102 3.898 29 H 0.271 0.729 30 H 0.097 0.903 31 H 0.097 0.903 32 H 0.084 0.916 33 H 0.089 0.911 34 H 0.386 0.614 35 H 0.403 0.597 36 H 0.133 0.867 37 H 0.087 0.913 38 H 0.099 0.901 39 H 0.078 0.922 40 H 0.084 0.916 41 H 0.102 0.898 42 H 0.078 0.922 43 H 0.075 0.925 44 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.812 -22.251 5.062 31.568 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.516 5.516 2 C -0.112 4.112 3 Si 0.681 3.319 4 H -0.192 1.192 5 H -0.199 1.199 6 H -0.159 1.159 7 C -0.670 4.670 8 H 0.106 0.894 9 S 0.086 5.914 10 C -0.268 4.268 11 C 0.336 3.664 12 O -0.385 6.385 13 N -0.361 5.361 14 C -0.053 4.053 15 C 0.025 3.975 16 H 0.099 0.901 17 O -0.356 6.356 18 C 0.039 3.961 19 H 0.135 0.865 20 N -0.368 5.368 21 C 0.344 3.656 22 O -0.414 6.414 23 C -0.223 4.223 24 C -0.059 4.059 25 C -0.144 4.144 26 C -0.180 4.180 27 C -0.146 4.146 28 C -0.022 4.022 29 H 0.081 0.919 30 H 0.116 0.884 31 H 0.115 0.885 32 H 0.102 0.898 33 H 0.107 0.893 34 H 0.234 0.766 35 H 0.238 0.762 36 H 0.151 0.849 37 H 0.106 0.894 38 H 0.118 0.882 39 H 0.097 0.903 40 H 0.103 0.897 41 H 0.120 0.880 42 H 0.097 0.903 43 H 0.093 0.907 44 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 23.491 -20.527 3.922 31.442 hybrid contribution -1.655 -0.426 0.839 1.904 sum 21.836 -20.953 4.761 30.635 Atomic orbital electron populations 1.69935 1.05897 1.27796 1.47938 1.24703 0.94455 0.98962 0.93125 0.86740 0.81880 0.83271 0.79996 1.19161 1.19898 1.15937 1.22295 0.88147 0.97552 1.58964 0.89364 1.84834 1.09412 0.99767 1.97420 1.23260 0.93366 1.04496 1.05722 1.20046 0.90660 0.80388 0.75257 1.90727 1.58860 1.40995 1.47933 1.48250 1.06545 1.05187 1.76085 1.22995 0.95229 0.84405 1.02681 1.23173 0.93515 0.82884 0.97931 0.90067 1.86557 1.39257 1.31330 1.78411 1.21868 0.84702 0.92770 0.96773 0.86505 1.45710 1.09808 1.68920 1.12338 1.18453 0.82354 0.76978 0.87822 1.90803 1.82479 1.51744 1.16356 1.21507 0.92633 1.08503 0.99649 1.23519 0.93595 0.90199 0.98607 1.22253 0.96928 0.99720 0.95538 1.22744 1.00101 0.99295 0.95908 1.22376 0.93265 1.01021 0.97927 1.22271 0.83278 0.93120 1.03579 0.91909 0.88425 0.88490 0.89815 0.89286 0.76576 0.76215 0.84880 0.89405 0.88237 0.90284 0.89693 0.87958 0.90307 0.90696 0.90241 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.30 13.97 55.49 0.78 -25.52 16 2 C 0.10 2.80 5.50 -17.43 -0.10 2.70 16 3 Si 0.86 21.71 27.74 -169.99 -4.71 16.99 16 4 H -0.27 -6.70 7.11 56.52 0.40 -6.30 16 5 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 6 H -0.24 -5.96 6.74 56.52 0.38 -5.58 16 7 C -0.52 -14.90 10.04 30.94 0.31 -14.59 16 8 H 0.09 2.61 8.03 -52.49 -0.42 2.19 16 9 S -0.14 -3.56 18.55 -107.50 -1.99 -5.55 16 10 C -0.12 -2.27 5.16 36.01 0.19 -2.09 16 11 C 0.55 10.02 7.87 -10.99 -0.09 9.94 16 12 O -0.51 -11.37 16.19 5.55 0.09 -11.28 16 13 N -0.62 -8.47 3.33 -170.52 -0.57 -9.04 16 14 C 0.07 0.69 6.43 -2.53 -0.02 0.67 16 15 C 0.09 0.66 4.06 -24.58 -0.10 0.56 16 16 H 0.08 0.50 8.01 -51.93 -0.42 0.08 16 17 O -0.55 -4.07 13.47 -35.23 -0.47 -4.55 16 18 C 0.14 1.44 3.06 -66.10 -0.20 1.24 16 19 H 0.12 1.39 7.55 -51.93 -0.39 1.00 16 20 N -0.72 -6.07 5.10 -53.21 -0.27 -6.34 16 21 C 0.55 5.83 7.76 -12.67 -0.10 5.73 16 22 O -0.54 -7.58 14.80 5.26 0.08 -7.50 16 23 C -0.20 -1.59 10.03 -37.81 -0.38 -1.97 16 24 C -0.06 -0.44 6.93 -100.49 -0.70 -1.14 16 25 C -0.11 -0.84 6.99 -27.56 -0.19 -1.04 16 26 C -0.14 -0.77 8.17 -26.18 -0.21 -0.98 16 27 C -0.11 -0.55 7.96 -27.39 -0.22 -0.77 16 28 C 0.10 1.27 6.62 -3.06 -0.02 1.25 16 29 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 30 H 0.10 1.76 8.14 -51.92 -0.42 1.34 16 31 H 0.10 1.70 7.85 -51.92 -0.41 1.29 16 32 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.09 0.75 7.48 -51.93 -0.39 0.36 16 34 H 0.39 1.21 9.12 45.56 0.42 1.62 16 35 H 0.40 2.25 8.54 -40.82 -0.35 1.90 16 36 H 0.13 0.66 8.06 -52.49 -0.42 0.24 16 37 H 0.09 0.85 7.49 -51.93 -0.39 0.46 16 38 H 0.10 0.75 8.14 -51.93 -0.42 0.32 16 39 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 40 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 41 H 0.10 0.42 8.14 -51.93 -0.42 -0.01 16 42 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 43 H 0.07 0.94 8.03 -51.93 -0.42 0.53 16 44 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 LS Contribution 384.24 15.07 5.79 5.79 Total: -1.00 -37.39 384.24 -8.83 -46.22 By element: Atomic # 1 Polarization: 6.99 SS G_CDS: -5.72 Total: 1.27 kcal Atomic # 6 Polarization: 1.34 SS G_CDS: -1.82 Total: -0.48 kcal Atomic # 7 Polarization: -40.84 SS G_CDS: -0.06 Total: -40.90 kcal Atomic # 8 Polarization: -23.03 SS G_CDS: -0.31 Total: -23.34 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -4.71 Total: 16.99 kcal Atomic # 16 Polarization: -3.56 SS G_CDS: -1.99 Total: -5.55 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -37.39 -8.83 -46.22 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001512916330.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.718 kcal (2) G-P(sol) polarization free energy of solvation -37.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.835 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.223 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.940 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds