Wall clock time and date at job start Tue Mar 31 2020 23:16:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86795 * 120.00464 * 2 1 4 4 H 1.48498 * 109.47201 * 270.00314 * 3 2 1 5 5 H 1.48504 * 109.47085 * 30.00319 * 3 2 1 6 6 H 1.48507 * 109.47440 * 149.99780 * 3 2 1 7 7 C 1.38806 * 119.99702 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00180 * 0.02562 * 7 2 1 9 9 S 1.76196 * 119.99917 * 180.02562 * 7 2 1 10 10 C 1.81001 * 99.99988 * 179.97438 * 9 7 2 11 11 C 1.50701 * 109.47301 * 179.97438 * 10 9 7 12 12 O 1.21288 * 119.99675 * 0.02562 * 11 10 9 13 13 N 1.34773 * 120.00203 * 179.97438 * 11 10 9 14 14 C 1.47418 * 125.64700 * 0.06380 * 13 11 10 15 15 C 1.54915 * 104.83107 * 204.07770 * 14 13 11 16 16 H 1.09002 * 111.00539 * 81.06145 * 15 14 13 17 17 O 1.42903 * 111.03771 * 204.89809 * 15 14 13 18 18 C 1.55154 * 101.58176 * 322.98725 * 15 14 13 19 19 H 1.08997 * 110.72125 * 276.96414 * 18 15 14 20 20 N 1.46497 * 110.72310 * 153.86360 * 18 15 14 21 21 C 1.34776 * 120.00404 * 155.00031 * 20 18 15 22 22 O 1.21618 * 119.99555 * 0.02562 * 21 20 18 23 23 C 1.47098 * 120.00442 * 180.02562 * 21 20 18 24 24 C 1.32996 * 120.00192 * 180.02562 * 23 21 20 25 25 C 1.51396 * 136.31372 * 359.62904 * 24 23 21 26 26 C 1.53382 * 87.51538 * 206.05541 * 25 24 23 27 27 C 1.51402 * 136.31210 * 179.97438 * 24 23 21 28 28 C 1.47029 * 125.64802 * 180.02562 * 13 11 10 29 29 H 0.97007 * 119.99644 * 359.97438 * 1 2 3 30 30 H 1.09000 * 109.47083 * 59.99875 * 10 9 7 31 31 H 1.08997 * 109.46938 * 299.99872 * 10 9 7 32 32 H 1.08995 * 110.37279 * 85.24185 * 14 13 11 33 33 H 1.08997 * 110.36990 * 322.91383 * 14 13 11 34 34 H 0.96698 * 114.00266 * 295.39754 * 17 15 14 35 35 H 0.96996 * 119.99952 * 335.00231 * 20 18 15 36 36 H 1.07999 * 119.99569 * 359.97438 * 23 21 20 37 37 H 1.08997 * 113.56236 * 320.63624 * 25 24 23 38 38 H 1.09003 * 113.56410 * 91.37523 * 25 24 23 39 39 H 1.09000 * 113.96564 * 220.28857 * 26 25 24 40 40 H 1.09005 * 113.59505 * 88.79873 * 26 25 24 41 41 H 1.09003 * 113.56258 * 268.62384 * 27 24 23 42 42 H 1.08995 * 113.56314 * 39.36300 * 27 24 23 43 43 H 1.08993 * 109.88066 * 59.57140 * 28 13 11 44 44 H 1.09003 * 109.87770 * 298.40799 * 28 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.4978 2.0463 -1.4000 5 1 1.4479 2.6526 0.7001 6 1 3.5479 1.4400 0.7001 7 6 2.0102 -1.2021 -0.0005 8 1 1.4702 -2.1374 -0.0014 9 16 3.7721 -1.2022 0.0001 10 6 4.0864 -2.9847 -0.0001 11 6 5.5728 -3.2328 -0.0002 12 8 6.3439 -2.2965 0.0003 13 7 6.0454 -4.4950 0.0001 14 6 5.2248 -5.7196 -0.0008 15 6 6.1393 -6.8102 0.6109 16 1 6.1442 -6.7507 1.6993 17 8 5.7471 -8.1130 0.1737 18 6 7.5227 -6.4205 0.0264 19 1 7.6431 -6.8218 -0.9798 20 7 8.6036 -6.8836 0.9000 21 6 9.8302 -7.1131 0.3908 22 8 10.0397 -6.9352 -0.7939 23 6 10.9155 -7.5786 1.2678 24 6 12.1260 -7.8046 0.7654 25 6 12.7794 -7.7173 -0.5975 26 6 13.7725 -8.7823 -0.1157 27 6 13.4639 -8.2697 1.3000 28 6 7.4648 -4.8785 0.0005 29 1 -0.4850 0.8401 0.0004 30 1 3.6438 -3.4315 -0.8904 31 1 3.6431 -3.4319 0.8896 32 1 4.9441 -5.9875 -1.0193 33 1 4.3358 -5.5811 0.6146 34 1 4.8676 -8.3804 0.4738 35 1 8.4366 -7.0252 1.8449 36 1 10.7294 -7.7362 2.3200 37 1 12.1383 -8.0578 -1.4106 38 1 13.2408 -6.7505 -0.7984 39 1 14.8000 -8.6057 -0.4336 40 1 13.4386 -9.8040 -0.2969 41 1 14.1130 -7.4543 1.6192 42 1 13.3842 -9.0632 2.0430 43 1 7.9578 -4.4739 0.8844 44 1 7.9501 -4.5045 -0.9010 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001512916330.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:16:00 Heat of formation + Delta-G solvation = -98.346285 kcal Electronic energy + Delta-G solvation = -26238.421271 eV Core-core repulsion = 22282.281080 eV Total energy + Delta-G solvation = -3956.140192 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.62362 -40.68399 -39.49566 -38.81408 -36.63810 -35.42431 -34.68058 -32.50645 -31.51989 -30.05474 -29.06504 -27.85109 -26.68676 -25.19099 -24.01839 -22.35205 -21.82391 -20.92277 -19.77690 -19.26194 -18.78595 -18.31648 -17.91027 -17.20737 -17.07147 -16.90232 -16.72716 -16.41673 -15.88149 -15.77893 -15.58947 -15.17126 -15.06760 -14.95916 -14.87492 -14.20425 -14.04151 -13.75777 -13.47523 -13.35979 -13.34452 -13.18870 -13.02900 -12.94582 -12.69970 -12.65117 -11.92853 -11.91586 -11.87286 -11.58654 -11.43463 -11.18179 -11.05782 -10.76675 -10.55248 -10.41500 -10.05387 -9.88982 -9.02696 -8.52381 -6.23756 0.34187 0.91104 1.30726 1.39024 1.42027 1.49794 1.80916 2.11639 2.23934 2.24383 2.64228 2.86047 2.93233 3.18106 3.35854 3.55666 3.59592 3.69494 3.82632 3.87863 4.05565 4.13462 4.16984 4.19172 4.25530 4.36224 4.50210 4.59743 4.59991 4.65201 4.73885 4.80761 4.85536 4.92884 5.03638 5.05166 5.23750 5.33517 5.34562 5.65274 5.70130 6.10769 6.16941 6.50542 6.80464 6.92555 6.93903 7.19856 8.59669 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.023791 B = 0.001977 C = 0.001863 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1176.622173 B =14159.180698 C =15024.717962 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C 0.048 3.952 3 Si 0.911 3.089 4 H -0.264 1.264 5 H -0.258 1.258 6 H -0.238 1.238 7 C -0.527 4.527 8 H 0.066 0.934 9 S -0.178 6.178 10 C -0.101 4.101 11 C 0.549 3.451 12 O -0.561 6.561 13 N -0.610 5.610 14 C 0.062 3.938 15 C 0.106 3.894 16 H 0.111 0.889 17 O -0.560 6.560 18 C 0.150 3.850 19 H 0.095 0.905 20 N -0.702 5.702 21 C 0.545 3.455 22 O -0.583 6.583 23 C -0.209 4.209 24 C -0.069 4.069 25 C -0.123 4.123 26 C -0.135 4.135 27 C -0.095 4.095 28 C 0.104 3.896 29 H 0.277 0.723 30 H 0.112 0.888 31 H 0.120 0.880 32 H 0.088 0.912 33 H 0.110 0.890 34 H 0.407 0.593 35 H 0.420 0.580 36 H 0.167 0.833 37 H 0.059 0.941 38 H 0.097 0.903 39 H 0.093 0.907 40 H 0.086 0.914 41 H 0.116 0.884 42 H 0.096 0.904 43 H 0.075 0.925 44 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.901 -24.036 6.971 33.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.158 4.158 3 Si 0.733 3.267 4 H -0.189 1.189 5 H -0.182 1.182 6 H -0.162 1.162 7 C -0.675 4.675 8 H 0.084 0.916 9 S 0.048 5.952 10 C -0.252 4.252 11 C 0.338 3.662 12 O -0.439 6.439 13 N -0.347 5.347 14 C -0.060 4.060 15 C 0.046 3.954 16 H 0.128 0.872 17 O -0.369 6.369 18 C 0.043 3.957 19 H 0.113 0.887 20 N -0.354 5.354 21 C 0.337 3.663 22 O -0.464 6.464 23 C -0.230 4.230 24 C -0.071 4.071 25 C -0.159 4.159 26 C -0.173 4.173 27 C -0.132 4.132 28 C -0.020 4.020 29 H 0.087 0.913 30 H 0.130 0.870 31 H 0.138 0.862 32 H 0.106 0.894 33 H 0.128 0.872 34 H 0.259 0.741 35 H 0.259 0.741 36 H 0.185 0.815 37 H 0.078 0.922 38 H 0.115 0.885 39 H 0.112 0.888 40 H 0.104 0.896 41 H 0.134 0.866 42 H 0.115 0.885 43 H 0.094 0.906 44 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 24.542 -22.387 5.874 33.734 hybrid contribution -1.970 -0.065 0.169 1.978 sum 22.573 -22.452 6.044 32.406 Atomic orbital electron populations 1.70005 1.07177 1.28999 1.49011 1.25508 0.95245 1.02091 0.92921 0.85912 0.80724 0.79883 0.80135 1.18921 1.18213 1.16163 1.22421 0.89899 0.96805 1.58338 0.91584 1.84811 1.06848 1.05915 1.97592 1.23203 0.94646 0.99754 1.07565 1.19787 0.89788 0.81367 0.75307 1.90708 1.59564 1.42916 1.50671 1.48107 1.07827 1.04995 1.73725 1.23362 0.95853 0.83004 1.03828 1.22992 0.90896 0.82557 0.98988 0.87155 1.86530 1.41046 1.30495 1.78843 1.21633 0.86766 0.90736 0.96546 0.88727 1.45577 1.08915 1.67862 1.13056 1.19048 0.83328 0.76349 0.87617 1.90787 1.83254 1.53887 1.18487 1.21681 0.91729 1.08839 1.00708 1.23936 0.94791 0.89590 0.98774 1.22345 0.97757 1.00614 0.95233 1.22740 1.00073 0.98413 0.96031 1.22383 0.91231 1.01707 0.97878 1.22290 0.82278 0.95042 1.02438 0.91349 0.86967 0.86160 0.89393 0.87186 0.74095 0.74136 0.81549 0.92211 0.88469 0.88847 0.89556 0.86586 0.88519 0.90629 0.92675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -54.96 13.97 21.65 0.30 -54.66 16 2 C 0.05 2.79 5.50 84.86 0.47 3.26 16 3 Si 0.91 44.83 27.74 68.60 1.90 46.73 16 4 H -0.26 -12.79 7.11 99.48 0.71 -12.09 16 5 H -0.26 -11.86 7.11 99.48 0.71 -11.15 16 6 H -0.24 -11.70 6.74 99.48 0.67 -11.03 16 7 C -0.53 -30.24 10.04 67.96 0.68 -29.56 16 8 H 0.07 3.96 8.03 -2.91 -0.02 3.93 16 9 S -0.18 -8.99 18.55 -56.49 -1.05 -10.04 16 10 C -0.10 -3.76 5.16 71.24 0.37 -3.40 16 11 C 0.55 19.67 7.87 87.66 0.69 20.36 16 12 O -0.56 -25.14 16.19 -3.05 -0.05 -25.18 16 13 N -0.61 -15.84 3.33 -811.79 -2.70 -18.54 16 14 C 0.06 1.03 6.43 86.86 0.56 1.59 16 15 C 0.11 1.32 4.06 31.99 0.13 1.45 16 16 H 0.11 0.83 8.01 -2.39 -0.02 0.81 16 17 O -0.56 -6.48 13.47 -148.98 -2.01 -8.49 16 18 C 0.15 2.82 3.06 46.18 0.14 2.96 16 19 H 0.09 2.28 7.55 -2.39 -0.02 2.26 16 20 N -0.70 -10.83 5.10 -440.52 -2.25 -13.08 16 21 C 0.55 11.27 7.76 86.57 0.67 11.95 16 22 O -0.58 -17.26 14.80 -4.09 -0.06 -17.32 16 23 C -0.21 -2.97 10.03 23.43 0.23 -2.74 16 24 C -0.07 -0.99 6.93 -17.18 -0.12 -1.11 16 25 C -0.12 -1.96 6.99 30.06 0.21 -1.75 16 26 C -0.14 -1.26 8.17 30.95 0.25 -1.01 16 27 C -0.10 -0.72 7.96 30.17 0.24 -0.48 16 28 C 0.10 2.55 6.62 86.73 0.57 3.12 16 29 H 0.28 15.42 8.31 -92.70 -0.77 14.65 16 30 H 0.11 3.87 8.14 -2.40 -0.02 3.85 16 31 H 0.12 3.94 7.85 -2.40 -0.02 3.92 16 32 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 33 H 0.11 1.43 7.48 -2.39 -0.02 1.41 16 34 H 0.41 0.97 9.12 -74.06 -0.68 0.30 16 35 H 0.42 3.47 8.54 -92.71 -0.79 2.68 16 36 H 0.17 1.12 8.06 -2.91 -0.02 1.10 16 37 H 0.06 1.27 7.49 -2.39 -0.02 1.26 16 38 H 0.10 1.53 8.14 -2.39 -0.02 1.51 16 39 H 0.09 0.60 8.14 -2.39 -0.02 0.58 16 40 H 0.09 0.78 8.14 -2.38 -0.02 0.76 16 41 H 0.12 0.60 8.14 -2.39 -0.02 0.58 16 42 H 0.10 0.44 8.14 -2.39 -0.02 0.42 16 43 H 0.08 1.86 8.03 -2.39 -0.02 1.84 16 44 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 Total: -1.00 -84.03 384.24 -1.27 -85.30 By element: Atomic # 1 Polarization: 11.10 SS G_CDS: -0.47 Total: 10.63 kcal Atomic # 6 Polarization: -0.45 SS G_CDS: 5.10 Total: 4.65 kcal Atomic # 7 Polarization: -81.63 SS G_CDS: -4.64 Total: -86.28 kcal Atomic # 8 Polarization: -48.88 SS G_CDS: -2.12 Total: -51.00 kcal Atomic # 14 Polarization: 44.83 SS G_CDS: 1.90 Total: 46.73 kcal Atomic # 16 Polarization: -8.99 SS G_CDS: -1.05 Total: -10.04 kcal Total: -84.03 -1.27 -85.30 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001512916330.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.048 kcal (2) G-P(sol) polarization free energy of solvation -84.026 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.298 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.346 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds