Wall clock time and date at job start Tue Mar 31 2020 23:48:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31634 * 1 3 3 Si 1.86799 * 119.99826 * 2 1 4 4 H 1.48507 * 109.46850 * 269.99909 * 3 2 1 5 5 H 1.48498 * 109.47329 * 29.99336 * 3 2 1 6 6 H 1.48499 * 109.47220 * 150.00323 * 3 2 1 7 7 C 1.38803 * 120.00163 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99773 * 179.97438 * 7 2 1 9 9 S 1.76198 * 119.99710 * 0.02562 * 7 2 1 10 10 C 1.81000 * 99.99715 * 179.97438 * 9 7 2 11 11 C 1.50703 * 109.47389 * 179.97438 * 10 9 7 12 12 O 1.21283 * 119.99488 * 359.97438 * 11 10 9 13 13 N 1.34777 * 120.00290 * 180.02562 * 11 10 9 14 14 C 1.46498 * 119.99828 * 180.27728 * 13 11 10 15 15 H 1.09001 * 112.85160 * 25.05344 * 14 13 11 16 16 C 1.53784 * 113.61507 * 156.25317 * 14 13 11 17 17 C 1.53776 * 87.08293 * 139.97795 * 16 14 13 18 18 H 1.09004 * 113.61467 * 89.20111 * 17 16 14 19 19 N 1.46496 * 113.61621 * 220.01904 * 17 16 14 20 20 C 1.34771 * 120.00188 * 205.00082 * 19 17 16 21 21 O 1.21742 * 120.00318 * 359.97438 * 20 19 17 22 22 C 1.41807 * 120.00113 * 179.97438 * 20 19 17 23 23 C 1.33451 * 118.78527 * 180.02562 * 22 20 19 24 24 O 1.34349 * 123.07901 * 180.36884 * 23 22 20 25 25 C 1.45358 * 117.48031 * 343.69811 * 24 23 22 26 26 C 1.53475 * 108.26509 * 47.47183 * 25 24 23 27 27 C 1.50409 * 118.78359 * 359.72872 * 22 20 19 28 28 C 1.53781 * 113.61116 * 253.85697 * 14 13 11 29 29 H 0.96991 * 119.99795 * 0.02562 * 1 2 3 30 30 H 1.08998 * 109.47444 * 59.99749 * 10 9 7 31 31 H 1.09002 * 109.47411 * 300.00028 * 10 9 7 32 32 H 0.97001 * 119.99727 * 359.97438 * 13 11 10 33 33 H 1.09000 * 113.61297 * 254.52834 * 16 14 13 34 34 H 1.08999 * 113.61335 * 25.42565 * 16 14 13 35 35 H 0.97007 * 119.99742 * 25.00066 * 19 17 16 36 36 H 1.07999 * 118.46648 * 0.39090 * 23 22 20 37 37 H 1.09003 * 109.70547 * 167.16916 * 25 24 23 38 38 H 1.09002 * 109.70254 * 287.73894 * 25 24 23 39 39 H 1.09002 * 109.70645 * 56.99556 * 26 25 24 40 40 H 1.09003 * 109.70629 * 177.61048 * 26 25 24 41 41 H 1.08998 * 109.46114 * 282.38114 * 27 22 20 42 42 H 1.09009 * 109.45884 * 42.32867 * 27 22 20 43 43 H 1.08995 * 113.61680 * 334.57196 * 28 14 13 44 44 H 1.09006 * 113.61326 * 105.47146 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 2.4978 2.0464 -1.4002 5 1 1.4477 2.6527 0.6999 6 1 3.5479 1.4402 0.7000 7 6 2.0104 -1.2020 0.0005 8 1 3.0904 -1.2020 0.0001 9 16 1.1294 -2.7279 0.0005 10 6 2.5159 -3.8914 0.0005 11 6 1.9876 -5.3027 0.0012 12 8 0.7913 -5.5023 0.0021 13 7 2.8444 -6.3431 0.0018 14 6 2.3306 -7.7150 -0.0037 15 1 1.3317 -7.7912 -0.4331 16 6 3.3246 -8.7428 -0.5700 17 6 2.8605 -9.6907 0.5484 18 1 2.0070 -10.3091 0.2705 19 7 3.9491 -10.4624 1.1530 20 6 3.6885 -11.6434 1.7477 21 8 2.5484 -12.0688 1.7829 22 6 4.7424 -12.3907 2.3325 23 6 4.4570 -13.5572 2.9145 24 8 5.3859 -14.3309 3.5005 25 6 6.7792 -14.0609 3.1862 26 6 7.0162 -12.5497 3.3109 27 6 6.1415 -11.8424 2.2679 28 6 2.4763 -8.4327 1.3485 29 1 -0.4849 0.8400 -0.0004 30 1 3.1246 -3.7313 0.8905 31 1 3.1246 -3.7313 -0.8894 32 1 3.8011 -6.1834 0.0015 33 1 3.0700 -9.0908 -1.5710 34 1 4.3671 -8.4378 -0.4792 35 1 4.8576 -10.1233 1.1253 36 1 3.4313 -13.8953 2.9141 37 1 7.4236 -14.5931 3.8860 38 1 6.9957 -14.3848 2.1682 39 1 6.7439 -12.2163 4.3123 40 1 8.0659 -12.3254 3.1211 41 1 6.5513 -12.0093 1.2718 42 1 6.1225 -10.7729 2.4779 43 1 3.2864 -8.0428 1.9648 44 1 1.5377 -8.5309 1.8941 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001525292321.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:48:53 Heat of formation + Delta-G solvation = -81.264513 kcal Electronic energy + Delta-G solvation = -25760.286309 eV Core-core repulsion = 21804.886839 eV Total energy + Delta-G solvation = -3955.399470 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.15763 -40.19733 -39.19188 -37.88570 -34.94859 -34.03670 -32.57445 -32.43016 -31.94114 -29.12466 -26.35229 -25.98257 -25.63991 -25.38178 -23.58094 -21.70472 -20.46905 -20.31788 -19.33164 -18.30612 -17.79328 -17.20104 -16.54039 -16.33680 -16.22741 -15.77094 -15.17638 -15.13762 -14.93737 -14.80755 -14.66173 -14.51800 -14.02165 -13.81777 -13.53221 -13.31170 -13.10146 -12.82605 -12.77566 -12.60664 -12.00793 -11.92579 -11.55727 -11.50542 -11.41442 -11.25307 -11.07234 -11.03943 -11.02317 -10.76023 -10.12239 -9.81844 -9.41338 -9.33030 -9.07477 -8.98680 -8.82765 -8.23939 -6.50406 -6.22054 -3.92698 0.96934 2.62517 2.91676 3.01708 3.07051 3.14527 3.21737 3.28223 3.33748 3.74856 4.02048 4.09311 4.19610 4.20393 4.26729 4.36758 4.54670 4.63480 4.68320 4.72856 4.82915 4.87336 5.01160 5.12640 5.13282 5.20367 5.36983 5.42573 5.43325 5.47499 5.48459 5.64255 5.65636 5.71896 5.86340 5.88978 6.01110 6.12433 6.29630 6.63900 6.68076 7.25713 7.58902 7.69539 7.99674 8.34594 8.60242 9.23153 10.85372 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.026766 B = 0.001620 C = 0.001563 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1045.838304 B =17280.872116 C =17914.444311 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.073 3.927 3 Si 0.919 3.081 4 H -0.277 1.277 5 H -0.282 1.282 6 H -0.272 1.272 7 C -0.536 4.536 8 H 0.072 0.928 9 S -0.060 6.060 10 C -0.154 4.154 11 C 0.532 3.468 12 O -0.516 6.516 13 N -0.727 5.727 14 C 0.131 3.869 15 H 0.118 0.882 16 C -0.153 4.153 17 C 0.126 3.874 18 H 0.120 0.880 19 N -0.717 5.717 20 C 0.573 3.427 21 O -0.558 6.558 22 C -0.322 4.322 23 C 0.163 3.837 24 O -0.310 6.310 25 C 0.052 3.948 26 C -0.158 4.158 27 C -0.073 4.073 28 C -0.164 4.164 29 H 0.268 0.732 30 H 0.089 0.911 31 H 0.089 0.911 32 H 0.398 0.602 33 H 0.083 0.917 34 H 0.089 0.911 35 H 0.399 0.601 36 H 0.181 0.819 37 H 0.110 0.890 38 H 0.075 0.925 39 H 0.080 0.920 40 H 0.088 0.912 41 H 0.075 0.925 42 H 0.079 0.921 43 H 0.087 0.913 44 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.544 -28.280 3.810 34.032 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.136 4.136 3 Si 0.745 3.255 4 H -0.203 1.203 5 H -0.207 1.207 6 H -0.197 1.197 7 C -0.685 4.685 8 H 0.091 0.909 9 S 0.167 5.833 10 C -0.305 4.305 11 C 0.319 3.681 12 O -0.389 6.389 13 N -0.380 5.380 14 C 0.024 3.976 15 H 0.136 0.864 16 C -0.192 4.192 17 C 0.020 3.980 18 H 0.137 0.863 19 N -0.368 5.368 20 C 0.365 3.635 21 O -0.439 6.439 22 C -0.327 4.327 23 C 0.095 3.905 24 O -0.221 6.221 25 C -0.023 4.023 26 C -0.195 4.195 27 C -0.110 4.110 28 C -0.205 4.205 29 H 0.078 0.922 30 H 0.107 0.893 31 H 0.108 0.892 32 H 0.232 0.768 33 H 0.101 0.899 34 H 0.107 0.893 35 H 0.234 0.766 36 H 0.198 0.802 37 H 0.128 0.872 38 H 0.093 0.907 39 H 0.099 0.901 40 H 0.106 0.894 41 H 0.093 0.907 42 H 0.097 0.903 43 H 0.105 0.895 44 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 15.558 -28.961 3.972 33.114 hybrid contribution 3.088 1.837 -0.143 3.596 sum 18.646 -27.124 3.830 33.137 Atomic orbital electron populations 1.70017 1.05949 1.27467 1.46802 1.24995 0.95026 0.99025 0.94537 0.86167 0.79394 0.81586 0.78338 1.20273 1.20740 1.19724 1.22869 0.94898 0.91684 1.59005 0.90942 1.85420 1.04884 0.96303 1.96711 1.23539 1.06601 0.95448 1.04881 1.20358 0.86614 0.86346 0.74811 1.90706 1.15382 1.85558 1.47288 1.45932 1.09674 1.04989 1.77443 1.22144 0.99087 0.80164 0.96197 0.86366 1.23746 1.00195 0.95903 0.99337 1.22317 0.91275 0.90788 0.93595 0.86265 1.45838 1.11072 1.21363 1.58489 1.16604 0.88326 0.80820 0.77790 1.90827 1.22763 1.70240 1.60089 1.20032 0.97101 0.99713 1.15810 1.23033 0.93890 0.87976 0.85596 1.86296 1.16687 1.54876 1.64197 1.23587 0.79489 0.96713 1.02462 1.22230 1.01356 0.95105 1.00824 1.20299 0.91047 1.00218 0.99479 1.24016 1.03035 0.95393 0.98010 0.92168 0.89258 0.89223 0.76814 0.89878 0.89251 0.76583 0.80232 0.87234 0.90715 0.90141 0.89376 0.90655 0.90279 0.89491 0.90303 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.16 13.22 55.49 0.73 -25.42 16 2 C 0.07 2.09 5.49 -17.43 -0.10 2.00 16 3 Si 0.92 21.33 29.55 -169.99 -5.02 16.31 16 4 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 5 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 6 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 7 C -0.54 -15.24 9.50 30.94 0.29 -14.95 16 8 H 0.07 1.94 7.80 -52.49 -0.41 1.53 16 9 S -0.06 -1.62 20.57 -107.50 -2.21 -3.83 16 10 C -0.15 -3.06 6.16 36.01 0.22 -2.84 16 11 C 0.53 9.75 7.85 -10.98 -0.09 9.66 16 12 O -0.52 -11.65 15.48 5.55 0.09 -11.56 16 13 N -0.73 -9.18 5.36 -53.01 -0.28 -9.46 16 14 C 0.13 1.45 4.21 -67.12 -0.28 1.17 16 15 H 0.12 1.56 7.50 -51.93 -0.39 1.17 16 16 C -0.15 -1.16 7.58 -25.92 -0.20 -1.36 16 17 C 0.13 1.13 4.24 -67.03 -0.28 0.85 16 18 H 0.12 1.26 7.46 -51.93 -0.39 0.87 16 19 N -0.72 -5.64 5.27 -55.77 -0.29 -5.93 16 20 C 0.57 5.76 7.53 -14.90 -0.11 5.64 16 21 O -0.56 -7.72 15.51 5.15 0.08 -7.64 16 22 C -0.32 -2.42 5.69 -105.07 -0.60 -3.02 16 23 C 0.16 1.23 10.46 29.06 0.30 1.53 16 24 O -0.31 -2.07 10.48 -14.89 -0.16 -2.23 16 25 C 0.05 0.18 7.15 37.40 0.27 0.45 16 26 C -0.16 -0.53 6.24 -26.27 -0.16 -0.69 16 27 C -0.07 -0.33 5.10 -27.81 -0.14 -0.47 16 28 C -0.16 -1.71 7.69 -25.82 -0.20 -1.91 16 29 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 30 H 0.09 1.63 8.14 -51.92 -0.42 1.21 16 31 H 0.09 1.63 8.14 -51.91 -0.42 1.21 16 32 H 0.40 3.75 8.71 -40.82 -0.36 3.39 16 33 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.09 0.51 8.09 -51.93 -0.42 0.09 16 35 H 0.40 2.10 6.83 -40.82 -0.28 1.82 16 36 H 0.18 1.39 7.21 -52.49 -0.38 1.01 16 37 H 0.11 0.19 8.14 -51.93 -0.42 -0.24 16 38 H 0.07 0.21 8.14 -51.93 -0.42 -0.22 16 39 H 0.08 0.34 8.14 -51.93 -0.42 -0.09 16 40 H 0.09 0.14 8.14 -51.93 -0.42 -0.29 16 41 H 0.08 0.26 8.14 -51.93 -0.42 -0.16 16 42 H 0.08 0.31 7.14 -51.92 -0.37 -0.06 16 43 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 44 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 LS Contribution 382.15 15.07 5.76 5.76 Total: -1.00 -37.31 382.15 -8.74 -46.04 By element: Atomic # 1 Polarization: 8.25 SS G_CDS: -6.35 Total: 1.89 kcal Atomic # 6 Polarization: -2.85 SS G_CDS: -1.07 Total: -3.92 kcal Atomic # 7 Polarization: -40.98 SS G_CDS: 0.16 Total: -40.82 kcal Atomic # 8 Polarization: -21.44 SS G_CDS: 0.01 Total: -21.43 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Atomic # 16 Polarization: -1.62 SS G_CDS: -2.21 Total: -3.83 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -37.31 -8.74 -46.04 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001525292321.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.221 kcal (2) G-P(sol) polarization free energy of solvation -37.307 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.737 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.044 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.265 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds