Wall clock time and date at job start Tue Mar 31 2020 23:38:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31630 * 1 3 3 Si 1.86800 * 120.00087 * 2 1 4 4 H 1.48502 * 109.46937 * 180.02562 * 3 2 1 5 5 H 1.48494 * 109.46981 * 300.00302 * 3 2 1 6 6 H 1.48504 * 109.46639 * 60.00283 * 3 2 1 7 7 C 1.38806 * 119.99987 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00358 * 179.97438 * 7 2 1 9 9 S 1.76199 * 119.99615 * 0.02562 * 7 2 1 10 10 C 1.81006 * 99.99796 * 179.97438 * 9 7 2 11 11 C 1.50699 * 109.47213 * 179.97438 * 10 9 7 12 12 O 1.21281 * 119.99926 * 359.97438 * 11 10 9 13 13 N 1.34777 * 119.99900 * 180.02562 * 11 10 9 14 14 C 1.46497 * 119.99690 * 179.97438 * 13 11 10 15 15 C 1.50702 * 109.46908 * 179.97438 * 14 13 11 16 16 C 1.31001 * 120.00067 * 127.15864 * 15 14 13 17 17 C 1.50696 * 120.00277 * 7.55322 * 16 15 14 18 18 N 1.46500 * 109.47006 * 127.00611 * 17 16 15 19 19 C 1.34780 * 119.99991 * 179.97438 * 18 17 16 20 20 O 1.21281 * 119.99855 * 0.02562 * 19 18 17 21 21 C 1.50702 * 120.00041 * 180.02562 * 19 18 17 22 22 H 1.08995 * 115.50965 * 325.58449 * 21 19 18 23 23 C 1.53003 * 117.43007 * 110.95759 * 21 19 18 24 24 H 1.09002 * 119.80850 * 355.36664 * 23 21 19 25 25 C 1.54476 * 118.06173 * 198.08418 * 23 21 19 26 26 O 1.44422 * 104.80774 * 321.12689 * 25 23 21 27 27 C 1.45887 * 105.78771 * 319.92881 * 26 25 23 28 28 C 1.52999 * 117.42872 * 180.21433 * 21 19 18 29 29 H 1.08997 * 119.80973 * 4.63427 * 28 21 19 30 30 H 0.97003 * 119.99816 * 359.97438 * 1 2 3 31 31 H 1.09000 * 109.46887 * 299.99661 * 10 9 7 32 32 H 1.09000 * 109.47143 * 59.99854 * 10 9 7 33 33 H 0.96999 * 119.99870 * 359.97438 * 13 11 10 34 34 H 1.09003 * 109.47542 * 299.99664 * 14 13 11 35 35 H 1.09007 * 109.47623 * 59.99698 * 14 13 11 36 36 H 1.07998 * 119.99937 * 307.14995 * 15 14 13 37 37 H 1.08004 * 119.99541 * 187.56003 * 16 15 14 38 38 H 1.08996 * 109.47203 * 247.01370 * 17 16 15 39 39 H 1.09005 * 109.46571 * 7.01145 * 17 16 15 40 40 H 0.96991 * 120.00125 * 0.02562 * 18 17 16 41 41 H 1.08997 * 110.37237 * 79.96465 * 25 23 21 42 42 H 1.09000 * 110.36881 * 202.29926 * 25 23 21 43 43 H 1.09002 * 109.50873 * 281.50775 * 27 26 25 44 44 H 1.09002 * 111.91325 * 158.72293 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7103 1.3463 -0.0006 5 1 1.8915 2.3964 -1.2124 6 1 1.8916 2.3963 1.2126 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2022 -0.0010 9 16 1.1292 -2.7280 -0.0019 10 6 2.5158 -3.8915 -0.0029 11 6 1.9873 -5.3028 -0.0036 12 8 0.7910 -5.5023 -0.0029 13 7 2.8440 -6.3432 -0.0039 14 6 2.3302 -7.7151 -0.0039 15 6 3.4847 -8.6838 -0.0049 16 6 3.5465 -9.6300 0.8990 17 6 2.3851 -9.8583 1.8316 18 7 1.9878 -11.2675 1.7810 19 6 0.9631 -11.7064 2.5385 20 8 0.3696 -10.9346 3.2618 21 6 0.5547 -13.1561 2.4869 22 1 0.6587 -13.6387 1.5151 23 6 0.8214 -14.0082 3.7293 24 1 1.3579 -13.5792 4.5757 25 6 0.8168 -15.5449 3.5713 26 8 -0.2595 -15.8177 2.6478 27 6 -1.3402 -14.9105 3.0186 28 6 -0.6192 -13.5894 3.3672 29 1 -1.1710 -12.8441 3.9400 30 1 -0.4850 0.8401 0.0004 31 1 3.1243 -3.7307 -0.8928 32 1 3.1244 -3.7322 0.8872 33 1 3.8008 -6.1835 -0.0041 34 1 1.7218 -7.8753 0.8862 35 1 1.7213 -7.8751 -0.8938 36 1 4.2609 -8.5980 -0.7509 37 1 4.4300 -10.2465 0.9757 38 1 2.6797 -9.6001 2.8488 39 1 1.5459 -9.2330 1.5266 40 1 2.4626 -11.8847 1.2028 41 1 1.7662 -15.8868 3.1593 42 1 0.6240 -16.0244 4.5310 43 1 -1.8598 -15.3015 3.8933 44 1 -2.0406 -14.7553 2.1979 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001533385591.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:38:03 Heat of formation + Delta-G solvation = -60.994291 kcal Electronic energy + Delta-G solvation = -25064.428674 eV Core-core repulsion = 21109.908187 eV Total energy + Delta-G solvation = -3954.520488 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.19399 -39.53899 -39.15233 -36.93636 -34.83814 -34.67509 -32.88182 -32.42282 -29.64484 -29.27518 -27.97380 -26.28739 -25.52334 -25.02875 -22.42899 -21.18591 -20.54576 -20.45559 -19.33787 -18.13984 -17.65957 -17.07635 -16.50419 -16.30854 -16.17159 -15.80009 -15.51439 -15.47045 -15.21701 -14.80288 -14.71125 -14.04436 -13.91427 -13.89234 -13.57754 -13.19448 -13.14591 -13.06778 -12.66502 -12.50372 -12.27167 -12.11604 -11.83738 -11.23409 -11.06689 -11.01580 -10.89898 -10.77395 -10.75694 -10.43915 -10.18198 -9.90592 -9.80150 -9.46801 -9.33301 -9.07183 -8.82065 -8.22530 -6.49513 -6.21280 -3.91824 1.42735 1.99646 2.70025 3.06679 3.08507 3.09476 3.21948 3.29280 3.34368 3.37230 3.78562 4.02563 4.05687 4.19972 4.20656 4.27162 4.31157 4.51206 4.63062 4.80613 4.84366 4.86914 5.05961 5.12019 5.13332 5.13989 5.18968 5.21065 5.31904 5.41307 5.49672 5.52013 5.52990 5.74722 5.88721 5.95201 6.06882 6.11249 6.13576 6.25370 6.58117 7.06838 7.60236 7.68096 7.82093 8.35829 8.59373 9.24093 10.86213 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.026487 B = 0.001470 C = 0.001423 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1056.879369 B =19041.776637 C =19676.589130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.073 3.927 3 Si 0.919 3.081 4 H -0.272 1.272 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.535 4.535 8 H 0.073 0.927 9 S -0.060 6.060 10 C -0.153 4.153 11 C 0.531 3.469 12 O -0.516 6.516 13 N -0.735 5.735 14 C 0.133 3.867 15 C -0.140 4.140 16 C -0.164 4.164 17 C 0.133 3.867 18 N -0.720 5.720 19 C 0.543 3.457 20 O -0.531 6.531 21 C -0.146 4.146 22 H 0.128 0.872 23 C -0.174 4.174 24 H 0.130 0.870 25 C 0.074 3.926 26 O -0.379 6.379 27 C 0.072 3.928 28 C -0.165 4.165 29 H 0.138 0.862 30 H 0.268 0.732 31 H 0.090 0.910 32 H 0.090 0.910 33 H 0.399 0.601 34 H 0.080 0.920 35 H 0.076 0.924 36 H 0.125 0.875 37 H 0.123 0.877 38 H 0.078 0.922 39 H 0.088 0.912 40 H 0.403 0.597 41 H 0.098 0.902 42 H 0.075 0.925 43 H 0.076 0.924 44 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.265 -32.639 4.493 33.968 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.136 4.136 3 Si 0.745 3.255 4 H -0.196 1.196 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.684 4.684 8 H 0.091 0.909 9 S 0.166 5.834 10 C -0.303 4.303 11 C 0.317 3.683 12 O -0.390 6.390 13 N -0.390 5.390 14 C 0.010 3.990 15 C -0.159 4.159 16 C -0.184 4.184 17 C 0.010 3.990 18 N -0.371 5.371 19 C 0.329 3.671 20 O -0.407 6.407 21 C -0.167 4.167 22 H 0.146 0.854 23 C -0.193 4.193 24 H 0.148 0.852 25 C -0.003 4.003 26 O -0.298 6.298 27 C -0.005 4.005 28 C -0.184 4.184 29 H 0.155 0.845 30 H 0.078 0.922 31 H 0.108 0.892 32 H 0.108 0.892 33 H 0.233 0.767 34 H 0.098 0.902 35 H 0.094 0.906 36 H 0.142 0.858 37 H 0.141 0.859 38 H 0.096 0.904 39 H 0.106 0.894 40 H 0.237 0.763 41 H 0.116 0.884 42 H 0.093 0.907 43 H 0.094 0.906 44 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 5.637 -32.451 4.859 33.293 hybrid contribution 2.859 1.298 -0.172 3.144 sum 8.496 -31.153 4.687 32.629 Atomic orbital electron populations 1.70031 1.05958 1.27351 1.46910 1.24998 0.95024 0.99041 0.94538 0.86111 0.79566 0.81877 0.77900 1.19625 1.20571 1.20560 1.22911 0.94946 0.91640 1.58874 0.90860 1.85431 1.04894 0.96341 1.96712 1.23527 1.06604 0.95230 1.04971 1.20350 0.86519 0.86276 0.75148 1.90716 1.15363 1.85540 1.47344 1.45936 1.10043 1.04904 1.78133 1.20497 0.94656 0.80561 1.03300 1.23043 0.99209 0.96285 0.97374 1.22835 0.98482 1.00748 0.96304 1.20607 0.96469 0.82025 0.99852 1.45820 1.34617 1.10927 1.45773 1.19490 0.79630 0.88418 0.79594 1.90760 1.53336 1.56864 1.39780 1.22063 1.03745 0.92917 0.97978 0.85449 1.24030 1.01201 0.95175 0.98898 0.85244 1.22953 0.91665 0.91281 0.94367 1.89350 1.25794 1.59873 1.54752 1.23272 0.90143 0.85583 1.01468 1.24003 0.90833 1.00222 1.03307 0.84455 0.92227 0.89166 0.89160 0.76702 0.90215 0.90615 0.85757 0.85919 0.90414 0.89445 0.76299 0.88371 0.90717 0.90561 0.87874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.32 13.22 55.49 0.73 -25.58 16 2 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 3 Si 0.92 21.48 29.55 -169.99 -5.02 16.45 16 4 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 5 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 6 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 7 C -0.54 -15.33 9.50 30.94 0.29 -15.03 16 8 H 0.07 1.98 7.80 -52.49 -0.41 1.57 16 9 S -0.06 -1.65 20.57 -107.50 -2.21 -3.87 16 10 C -0.15 -3.08 6.16 36.00 0.22 -2.86 16 11 C 0.53 9.96 7.85 -10.99 -0.09 9.87 16 12 O -0.52 -11.91 15.86 5.56 0.09 -11.82 16 13 N -0.74 -9.61 5.55 -61.47 -0.34 -9.95 16 14 C 0.13 1.51 5.76 -5.19 -0.03 1.48 16 15 C -0.14 -1.02 9.63 -36.03 -0.35 -1.36 16 16 C -0.16 -1.04 9.63 -36.03 -0.35 -1.38 16 17 C 0.13 1.14 5.76 -5.20 -0.03 1.11 16 18 N -0.72 -5.29 5.55 -61.47 -0.34 -5.64 16 19 C 0.54 5.29 7.61 -10.98 -0.08 5.21 16 20 O -0.53 -7.55 16.34 5.56 0.09 -7.46 16 21 C -0.15 -1.04 5.56 -91.77 -0.51 -1.55 16 22 H 0.13 0.76 8.06 -51.93 -0.42 0.34 16 23 C -0.17 -1.04 6.94 -89.14 -0.62 -1.66 16 24 H 0.13 0.75 8.14 -51.93 -0.42 0.32 16 25 C 0.07 0.37 7.56 37.93 0.29 0.65 16 26 O -0.38 -2.76 11.33 -35.23 -0.40 -3.16 16 27 C 0.07 0.42 7.66 37.93 0.29 0.71 16 28 C -0.17 -1.17 6.63 -89.14 -0.59 -1.76 16 29 H 0.14 1.13 7.81 -51.93 -0.41 0.72 16 30 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 31 H 0.09 1.66 8.14 -51.92 -0.42 1.24 16 32 H 0.09 1.68 8.14 -51.92 -0.42 1.26 16 33 H 0.40 3.94 8.46 -40.82 -0.35 3.60 16 34 H 0.08 1.01 5.30 -51.93 -0.28 0.74 16 35 H 0.08 0.93 8.14 -51.93 -0.42 0.50 16 36 H 0.12 0.69 8.06 -52.49 -0.42 0.27 16 37 H 0.12 0.52 8.06 -52.48 -0.42 0.09 16 38 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 39 H 0.09 0.95 5.29 -51.93 -0.27 0.68 16 40 H 0.40 1.76 8.46 -40.82 -0.35 1.41 16 41 H 0.10 0.35 8.14 -51.93 -0.42 -0.07 16 42 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 43 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 44 H 0.10 0.52 8.14 -51.93 -0.42 0.09 16 LS Contribution 389.94 15.07 5.88 5.88 Total: -1.00 -38.06 389.94 -9.43 -47.49 By element: Atomic # 1 Polarization: 8.50 SS G_CDS: -6.26 Total: 2.24 kcal Atomic # 6 Polarization: -2.93 SS G_CDS: -1.65 Total: -4.58 kcal Atomic # 7 Polarization: -41.23 SS G_CDS: 0.05 Total: -41.17 kcal Atomic # 8 Polarization: -22.22 SS G_CDS: -0.22 Total: -22.44 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.45 kcal Atomic # 16 Polarization: -1.65 SS G_CDS: -2.21 Total: -3.87 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -38.06 -9.43 -47.49 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001533385591.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.505 kcal (2) G-P(sol) polarization free energy of solvation -38.056 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.560 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.490 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds