Wall clock time and date at job start Tue Mar 31 2020 22:48:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86805 * 119.99900 * 2 1 4 4 H 1.48493 * 109.47154 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.46857 * 300.00009 * 3 2 1 6 6 H 1.48508 * 109.47033 * 59.99831 * 3 2 1 7 7 C 1.37879 * 120.00310 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99951 * 186.18120 * 7 2 1 9 9 C 1.50698 * 119.99658 * 6.18017 * 7 2 1 10 10 H 1.09005 * 109.46855 * 181.36403 * 9 7 2 11 11 C 1.52999 * 109.47576 * 301.36497 * 9 7 2 12 12 C 1.50698 * 109.47136 * 295.00126 * 11 9 7 13 13 O 1.21288 * 120.00033 * 359.97438 * 12 11 9 14 14 N 1.34779 * 120.00118 * 179.97438 * 12 11 9 15 15 N 1.40098 * 119.99846 * 180.02562 * 14 12 11 16 16 C 1.34779 * 119.99846 * 179.97438 * 15 14 12 17 17 O 1.21521 * 119.99656 * 0.02562 * 16 15 14 18 18 C 1.48133 * 120.00094 * 180.02562 * 16 15 14 19 19 C 1.40112 * 121.14192 * 180.02562 * 18 16 15 20 20 C 1.38502 * 117.82155 * 179.97438 * 19 18 16 21 21 N 1.31924 * 119.96780 * 0.02562 * 20 19 18 22 22 N 1.28279 * 122.51703 * 359.97438 * 21 20 19 23 23 C 1.31924 * 122.32222 * 0.02562 * 22 21 20 24 24 C 1.50698 * 109.46897 * 61.37090 * 9 7 2 25 25 C 1.38240 * 120.00426 * 91.37227 * 24 9 7 26 26 C 1.38239 * 119.99822 * 179.78914 * 25 24 9 27 27 C 1.38230 * 120.00076 * 0.43464 * 26 25 24 28 28 C 1.38238 * 120.00257 * 359.81516 * 27 26 25 29 29 C 1.38235 * 119.99907 * 271.63780 * 24 9 7 30 30 H 0.96994 * 120.00003 * 359.97438 * 1 2 3 31 31 H 1.08996 * 109.47136 * 174.99849 * 11 9 7 32 32 H 1.09002 * 109.46851 * 54.99823 * 11 9 7 33 33 H 0.96999 * 119.99493 * 359.97438 * 14 12 11 34 34 H 0.97000 * 120.00596 * 0.02562 * 15 14 12 35 35 H 1.08002 * 121.08975 * 359.95307 * 19 18 16 36 36 H 1.07998 * 120.01749 * 179.97438 * 20 19 18 37 37 H 1.08004 * 120.17105 * 180.27455 * 23 22 21 38 38 H 1.08000 * 119.99646 * 359.97438 * 25 24 9 39 39 H 1.07997 * 119.99137 * 180.27192 * 26 25 24 40 40 H 1.08001 * 120.00053 * 179.84065 * 27 26 25 41 41 H 1.07994 * 120.00439 * 180.02562 * 28 27 26 42 42 H 1.08004 * 119.99731 * 359.97438 * 29 24 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8903 2.3964 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0799 -1.1966 0.1012 9 6 1.2577 -2.4954 -0.1394 10 1 1.9625 -3.3256 -0.0933 11 6 0.2417 -2.6252 0.9972 12 6 0.9698 -2.7229 2.3130 13 8 2.1820 -2.6923 2.3391 14 7 0.2739 -2.8443 3.4609 15 7 0.9508 -2.9346 4.6841 16 6 0.2549 -3.0556 5.8320 17 8 -0.9597 -3.0867 5.8058 18 6 0.9705 -3.1505 7.1256 19 6 0.2711 -3.2773 8.3330 20 6 1.0093 -3.3611 9.5019 21 7 2.3270 -3.3199 9.4535 22 7 2.9733 -3.2039 8.3515 23 6 2.3661 -3.1166 7.1835 24 6 0.5371 -2.5212 -1.4627 25 6 1.1569 -3.0552 -2.5770 26 6 0.4942 -3.0828 -3.7899 27 6 -0.7848 -2.5682 -3.8905 28 6 -1.4027 -2.0294 -2.7774 29 6 -0.7416 -2.0058 -1.5636 30 1 -0.4850 0.8400 0.0004 31 1 -0.3591 -3.5221 0.8469 32 1 -0.4079 -1.7499 1.0055 33 1 -0.6956 -2.8685 3.4400 34 1 1.9202 -2.9094 4.7051 35 1 -0.8083 -3.3084 8.3517 36 1 0.5065 -3.4592 10.4526 37 1 2.9449 -3.0243 6.2764 38 1 2.1578 -3.4536 -2.4992 39 1 0.9769 -3.5040 -4.6593 40 1 -1.3015 -2.5874 -4.8386 41 1 -2.4020 -1.6278 -2.8559 42 1 -1.2243 -1.5850 -0.6939 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001557069670.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:48:29 Heat of formation + Delta-G solvation = 37.966515 kcal Electronic energy + Delta-G solvation = -28134.491531 eV Core-core repulsion = 24081.111106 eV Total energy + Delta-G solvation = -4053.380425 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.132 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.39480 -41.23739 -40.24329 -39.51549 -36.67234 -35.92281 -34.63742 -33.86975 -33.04445 -32.21554 -31.36012 -29.92918 -27.82927 -26.56184 -25.65754 -24.41664 -23.07630 -22.78777 -22.16298 -21.10375 -19.52771 -19.27961 -18.33042 -18.11704 -17.74046 -17.40580 -16.98265 -16.89428 -16.74377 -16.22497 -16.02874 -15.60365 -15.43681 -15.37736 -15.14450 -14.71737 -14.60010 -14.51366 -13.78201 -13.51604 -13.29336 -13.15715 -12.82825 -12.73878 -12.49454 -12.17301 -12.14090 -11.97793 -11.88225 -11.73161 -11.46160 -11.29637 -11.13730 -11.07291 -10.90627 -10.71571 -10.41921 -9.46906 -9.38621 -9.10846 -7.97721 -6.11411 -0.89396 -0.25396 0.67687 0.89495 1.00138 1.34952 1.36042 1.41934 1.49809 1.88200 2.44865 2.46329 2.68943 2.94653 3.16232 3.19460 3.37365 3.40122 3.43263 3.74696 4.13296 4.28829 4.34199 4.42389 4.46676 4.51496 4.66152 4.69362 4.79678 4.88921 5.02975 5.09178 5.14950 5.30063 5.50482 5.54285 5.61681 5.64404 5.70537 5.92629 5.95777 6.11869 6.35739 6.41293 6.49578 6.58864 6.68498 6.85694 7.40641 7.47254 7.52652 8.92110 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.015901 B = 0.002630 C = 0.002455 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1760.438429 B =10645.536964 C =11400.803447 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.037 3.963 3 Si 0.928 3.072 4 H -0.284 1.284 5 H -0.283 1.283 6 H -0.285 1.285 7 C -0.492 4.492 8 H 0.033 0.967 9 C 0.091 3.909 10 H 0.023 0.977 11 C -0.122 4.122 12 C 0.530 3.470 13 O -0.556 6.556 14 N -0.529 5.529 15 N -0.508 5.508 16 C 0.565 3.435 17 O -0.553 6.553 18 C -0.133 4.133 19 C -0.040 4.040 20 C 0.052 3.948 21 N -0.254 5.254 22 N -0.268 5.268 23 C 0.073 3.927 24 C -0.056 4.056 25 C -0.148 4.148 26 C -0.141 4.141 27 C -0.148 4.148 28 C -0.149 4.149 29 C -0.090 4.090 30 H 0.263 0.737 31 H 0.085 0.915 32 H 0.133 0.867 33 H 0.435 0.565 34 H 0.434 0.566 35 H 0.187 0.813 36 H 0.225 0.775 37 H 0.189 0.811 38 H 0.107 0.893 39 H 0.132 0.868 40 H 0.134 0.866 41 H 0.124 0.876 42 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.391 -7.043 10.383 13.655 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.163 4.163 3 Si 0.756 3.244 4 H -0.209 1.209 5 H -0.209 1.209 6 H -0.211 1.211 7 C -0.530 4.530 8 H 0.052 0.948 9 C 0.072 3.928 10 H 0.042 0.958 11 C -0.164 4.164 12 C 0.320 3.680 13 O -0.431 6.431 14 N -0.281 5.281 15 N -0.253 5.253 16 C 0.351 3.649 17 O -0.430 6.430 18 C -0.148 4.148 19 C -0.070 4.070 20 C -0.112 4.112 21 N -0.095 5.095 22 N -0.108 5.108 23 C -0.093 4.093 24 C -0.056 4.056 25 C -0.166 4.166 26 C -0.159 4.159 27 C -0.166 4.166 28 C -0.167 4.167 29 C -0.108 4.108 30 H 0.073 0.927 31 H 0.103 0.897 32 H 0.150 0.850 33 H 0.279 0.721 34 H 0.278 0.722 35 H 0.204 0.796 36 H 0.242 0.758 37 H 0.205 0.795 38 H 0.125 0.875 39 H 0.150 0.850 40 H 0.152 0.848 41 H 0.142 0.858 42 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -4.026 -6.928 11.183 13.757 hybrid contribution -0.454 1.315 -0.982 1.703 sum -4.480 -5.613 10.201 12.475 Atomic orbital electron populations 1.69593 1.05477 1.26397 1.50834 1.25197 0.95643 1.00216 0.95229 0.85975 0.79152 0.81970 0.77294 1.20921 1.20882 1.21087 1.21032 0.92755 0.91335 1.47838 0.94823 1.17532 0.92055 0.95225 0.88022 0.95810 1.21875 1.00644 1.04808 0.89041 1.21617 0.88198 0.73677 0.84546 1.90628 1.15351 1.50215 1.86932 1.45363 1.09371 1.77630 0.95738 1.44685 1.09801 1.73116 0.97730 1.18132 0.86936 0.77385 0.82440 1.90805 1.13537 1.51874 1.86820 1.20818 0.95133 1.04729 0.94142 1.22979 1.04426 0.89265 0.90346 1.25065 0.90979 0.93957 1.01233 1.72836 1.09896 1.07265 1.19493 1.73089 1.32390 1.10009 0.95275 1.24797 0.92084 0.92712 0.99713 1.20297 0.93926 0.94949 0.96475 1.21111 0.99605 1.02272 0.93632 1.21165 0.95764 1.01786 0.97167 1.21213 0.95748 1.00863 0.98807 1.21390 1.00433 1.01237 0.93628 1.21585 0.94706 0.95615 0.98903 0.92711 0.89669 0.84952 0.72139 0.72188 0.79574 0.75821 0.79457 0.87475 0.85039 0.84829 0.85769 0.84283 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -42.55 7.74 21.45 0.17 -42.39 16 2 C 0.04 1.86 5.14 84.66 0.44 2.29 16 3 Si 0.93 42.64 29.54 68.60 2.03 44.67 16 4 H -0.28 -13.45 7.11 99.48 0.71 -12.74 16 5 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 6 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 7 C -0.49 -25.57 7.27 25.60 0.19 -25.39 16 8 H 0.03 1.89 7.82 -2.91 -0.02 1.87 16 9 C 0.09 4.17 1.98 -12.29 -0.02 4.14 16 10 H 0.02 1.12 7.89 -2.38 -0.02 1.10 16 11 C -0.12 -4.84 4.22 29.85 0.13 -4.71 16 12 C 0.53 20.52 7.69 87.66 0.67 21.20 16 13 O -0.56 -25.01 14.82 -3.06 -0.05 -25.05 16 14 N -0.53 -16.60 6.26 -173.52 -1.09 -17.68 16 15 N -0.51 -13.70 6.22 -175.40 -1.09 -14.79 16 16 C 0.57 13.86 7.92 86.87 0.69 14.55 16 17 O -0.55 -15.97 16.33 -3.78 -0.06 -16.03 16 18 C -0.13 -2.55 5.92 -19.84 -0.12 -2.67 16 19 C -0.04 -0.56 9.77 22.79 0.22 -0.34 16 20 C 0.05 0.66 11.30 84.74 0.96 1.61 16 21 N -0.25 -5.18 11.48 -57.33 -0.66 -5.84 16 22 N -0.27 -6.15 11.49 -56.54 -0.65 -6.80 16 23 C 0.07 1.43 10.84 85.04 0.92 2.35 16 24 C -0.06 -2.42 4.68 -19.87 -0.09 -2.51 16 25 C -0.15 -5.90 9.70 22.27 0.22 -5.69 16 26 C -0.14 -4.82 10.05 22.27 0.22 -4.59 16 27 C -0.15 -4.86 10.05 22.27 0.22 -4.63 16 28 C -0.15 -5.31 10.05 22.27 0.22 -5.09 16 29 C -0.09 -3.67 7.56 22.27 0.17 -3.50 16 30 H 0.26 12.34 8.31 -92.71 -0.77 11.57 16 31 H 0.09 2.88 8.14 -2.39 -0.02 2.86 16 32 H 0.13 5.59 4.65 -2.39 -0.01 5.58 16 33 H 0.44 12.38 8.00 -213.32 -1.71 10.67 16 34 H 0.43 10.89 6.15 -213.32 -1.31 9.57 16 35 H 0.19 1.85 7.80 -2.91 -0.02 1.83 16 36 H 0.23 0.71 8.06 -2.91 -0.02 0.69 16 37 H 0.19 3.03 6.53 -2.91 -0.02 3.01 16 38 H 0.11 4.12 8.06 -2.91 -0.02 4.09 16 39 H 0.13 3.65 8.06 -2.91 -0.02 3.63 16 40 H 0.13 3.46 8.06 -2.91 -0.02 3.43 16 41 H 0.12 3.81 8.06 -2.91 -0.02 3.78 16 42 H 0.14 5.88 4.97 -2.91 -0.01 5.87 16 Total: -1.00 -66.20 359.89 1.72 -64.48 By element: Atomic # 1 Polarization: 34.33 SS G_CDS: -1.91 Total: 32.41 kcal Atomic # 6 Polarization: -18.00 SS G_CDS: 5.03 Total: -12.97 kcal Atomic # 7 Polarization: -84.18 SS G_CDS: -3.32 Total: -87.50 kcal Atomic # 8 Polarization: -40.97 SS G_CDS: -0.11 Total: -41.08 kcal Atomic # 14 Polarization: 42.64 SS G_CDS: 2.03 Total: 44.67 kcal Total: -66.20 1.72 -64.48 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001557069670.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.445 kcal (2) G-P(sol) polarization free energy of solvation -66.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.718 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.478 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds