Wall clock time and date at job start Tue Mar 31 2020 23:42:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31412 * 1 3 3 Si 1.86800 * 120.00045 * 2 1 4 4 H 1.48497 * 109.46847 * 269.99662 * 3 2 1 5 5 H 1.48493 * 109.47164 * 30.00093 * 3 2 1 6 6 H 1.48502 * 109.46888 * 149.99977 * 3 2 1 7 7 C 1.38950 * 119.99401 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99459 * 179.97438 * 7 2 1 9 9 N 1.37095 * 120.00380 * 359.97438 * 7 2 1 10 10 C 1.34773 * 119.99878 * 179.97438 * 9 7 2 11 11 O 1.21297 * 120.00195 * 359.72970 * 10 9 7 12 12 C 1.50706 * 120.00081 * 180.02562 * 10 9 7 13 13 N 1.46895 * 109.47182 * 179.72734 * 12 10 9 14 14 C 1.46901 * 110.99816 * 179.97438 * 13 12 10 15 15 H 1.08993 * 109.47326 * 325.00220 * 14 13 12 16 16 C 1.53001 * 109.46830 * 85.00098 * 14 13 12 17 17 O 1.42897 * 109.47472 * 65.00184 * 16 14 13 18 18 C 1.53001 * 109.47245 * 204.99659 * 14 13 12 19 19 N 1.46499 * 109.46851 * 55.00305 * 18 14 13 20 20 C 1.34779 * 120.00187 * 179.97438 * 19 18 14 21 21 O 1.21512 * 119.99428 * 0.02562 * 20 19 18 22 22 C 1.48158 * 120.00216 * 180.02562 * 20 19 18 23 23 C 1.39900 * 120.90659 * 359.72101 * 22 20 19 24 24 C 1.38042 * 119.06507 * 179.72761 * 23 22 20 25 25 N 1.31879 * 120.93331 * 0.56047 * 24 23 22 26 26 C 1.31959 * 122.01218 * 359.71691 * 25 24 23 27 27 F 1.35100 * 119.58625 * 180.02562 * 26 25 24 28 28 C 1.38525 * 120.82808 * 359.97438 * 26 25 24 29 29 H 0.97004 * 120.00112 * 0.02562 * 1 2 3 30 30 H 0.96998 * 119.99597 * 0.02562 * 9 7 2 31 31 H 1.09001 * 109.46564 * 299.73030 * 12 10 9 32 32 H 1.08998 * 109.47012 * 59.72084 * 12 10 9 33 33 H 1.00902 * 111.00178 * 56.04567 * 13 12 10 34 34 H 1.09005 * 109.46975 * 184.99983 * 16 14 13 35 35 H 1.08997 * 109.47675 * 304.99814 * 16 14 13 36 36 H 0.96703 * 114.00471 * 180.02562 * 17 16 14 37 37 H 1.08997 * 109.46903 * 175.00153 * 18 14 13 38 38 H 1.08999 * 109.47615 * 295.00519 * 18 14 13 39 39 H 0.97002 * 120.00261 * 359.97438 * 19 18 14 40 40 H 1.07996 * 120.46725 * 359.97438 * 23 22 20 41 41 H 1.08005 * 119.53047 * 180.29698 * 24 23 22 42 42 H 1.07999 * 120.51168 * 179.97438 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4957 2.0463 -1.4001 5 1 1.4456 2.6526 0.7000 6 1 3.5457 1.4401 0.7001 7 6 2.0087 -1.2034 0.0005 8 1 3.0888 -1.2034 0.0001 9 7 1.3232 -2.3907 0.0016 10 6 1.9971 -3.5578 0.0016 11 8 3.2100 -3.5579 -0.0043 12 6 1.2435 -4.8630 0.0022 13 7 2.1981 -5.9795 -0.0045 14 6 1.4977 -7.2708 -0.0035 15 1 0.5874 -7.1900 0.5904 16 6 1.1371 -7.6565 -1.4396 17 8 2.3340 -7.8762 -2.1887 18 6 2.4067 -8.3436 0.5996 19 7 2.8485 -7.9177 1.9299 20 6 3.6624 -8.7100 2.6554 21 8 4.0301 -9.7773 2.2059 22 6 4.1087 -8.2795 4.0010 23 6 3.7016 -7.0520 4.5345 24 6 4.1357 -6.6913 5.7943 25 7 4.9321 -7.4806 6.4887 26 6 5.3447 -8.6438 6.0219 27 9 6.1598 -9.4138 6.7755 28 6 4.9518 -9.0858 4.7692 29 1 -0.4850 0.8401 -0.0004 30 1 0.3532 -2.3906 0.0016 31 1 0.6209 -4.9225 0.8949 32 1 0.6128 -4.9187 -0.8850 33 1 2.8365 -5.9142 0.7741 34 1 0.5407 -8.5688 -1.4319 35 1 0.5636 -6.8514 -1.8990 36 1 2.1811 -8.1244 -3.1107 37 1 1.8569 -9.2811 0.6822 38 1 3.2754 -8.4871 -0.0430 39 1 2.5553 -7.0655 2.2886 40 1 3.0537 -6.3976 3.9704 41 1 3.8221 -5.7475 6.2155 42 1 5.2929 -10.0385 4.3920 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001571424474.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:42:12 Heat of formation + Delta-G solvation = -111.817706 kcal Electronic energy + Delta-G solvation = -28643.376263 eV Core-core repulsion = 24152.731482 eV Total energy + Delta-G solvation = -4490.644781 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.138 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -49.37240 -40.98044 -39.55364 -38.57834 -37.61081 -35.72134 -34.33527 -33.83024 -33.18290 -31.41499 -31.28196 -30.20589 -26.68731 -26.40827 -24.62554 -24.06455 -23.90506 -21.19069 -20.73670 -19.49999 -18.93870 -18.00240 -17.79278 -17.53098 -17.08057 -16.48908 -16.46977 -16.30518 -15.72945 -15.64923 -15.46199 -14.76518 -14.74253 -14.53424 -14.32539 -14.01964 -13.91188 -13.82943 -13.66423 -13.43092 -13.34571 -12.63885 -12.56717 -12.34535 -11.91038 -11.69090 -11.54361 -11.17078 -11.08935 -10.69556 -10.48796 -10.44597 -10.28600 -10.09947 -9.99543 -9.58010 -9.50935 -9.42192 -8.56142 -8.21440 -8.03970 -6.48999 -3.89959 0.13756 0.43924 2.42835 2.57500 3.13026 3.13602 3.22588 3.25648 3.27946 3.79495 3.88440 4.03749 4.09918 4.16304 4.22805 4.33896 4.41091 4.55037 4.82272 4.97191 5.06723 5.11938 5.15349 5.18014 5.26261 5.26793 5.41871 5.46348 5.52690 5.60334 5.81024 5.87445 5.99440 6.08409 6.16158 6.98763 7.01602 7.13388 7.42277 7.48667 7.66653 7.72901 7.98500 8.52991 9.10708 9.45811 9.96901 10.68556 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.009146 B = 0.002766 C = 0.002205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3060.847161 B =10120.403411 C =12693.397485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.023 3.977 3 Si 0.930 3.070 4 H -0.278 1.278 5 H -0.283 1.283 6 H -0.269 1.269 7 C -0.300 4.300 8 H 0.103 0.897 9 N -0.562 5.562 10 C 0.439 3.561 11 O -0.580 6.580 12 C 0.047 3.953 13 N -0.653 5.653 14 C 0.075 3.925 15 H 0.062 0.938 16 C 0.091 3.909 17 O -0.554 6.554 18 C 0.121 3.879 19 N -0.719 5.719 20 C 0.562 3.438 21 O -0.522 6.522 22 C -0.058 4.058 23 C -0.151 4.151 24 C 0.140 3.860 25 N -0.499 5.499 26 C 0.306 3.694 27 F -0.108 7.108 28 C -0.138 4.138 29 H 0.272 0.728 30 H 0.392 0.608 31 H 0.044 0.956 32 H 0.087 0.913 33 H 0.347 0.653 34 H 0.046 0.954 35 H 0.053 0.947 36 H 0.374 0.626 37 H 0.076 0.924 38 H 0.096 0.904 39 H 0.400 0.600 40 H 0.150 0.850 41 H 0.178 0.822 42 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.267 -17.158 6.030 18.231 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.178 4.178 3 Si 0.757 3.243 4 H -0.204 1.204 5 H -0.209 1.209 6 H -0.194 1.194 7 C -0.429 4.429 8 H 0.121 0.879 9 N -0.199 5.199 10 C 0.224 3.776 11 O -0.464 6.464 12 C -0.085 4.085 13 N -0.288 5.288 14 C -0.036 4.036 15 H 0.080 0.920 16 C 0.012 3.988 17 O -0.358 6.358 18 C -0.002 4.002 19 N -0.372 5.372 20 C 0.347 3.653 21 O -0.398 6.398 22 C -0.069 4.069 23 C -0.172 4.172 24 C -0.016 4.016 25 N -0.214 5.214 26 C 0.153 3.847 27 F -0.087 7.087 28 C -0.160 4.160 29 H 0.082 0.918 30 H 0.225 0.775 31 H 0.062 0.938 32 H 0.105 0.895 33 H 0.169 0.831 34 H 0.064 0.936 35 H 0.071 0.929 36 H 0.220 0.780 37 H 0.095 0.905 38 H 0.114 0.886 39 H 0.236 0.764 40 H 0.167 0.833 41 H 0.195 0.805 42 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 0.348 -17.386 6.423 18.538 hybrid contribution -1.214 0.880 -0.139 1.506 sum -0.866 -16.506 6.284 17.683 Atomic orbital electron populations 1.69606 1.05954 1.28247 1.50465 1.25261 0.95630 0.99752 0.97199 0.85860 0.79249 0.80743 0.78483 1.20357 1.20909 1.19366 1.19702 0.93386 0.82174 1.47688 0.87888 1.41857 1.09167 1.04598 1.64245 1.19736 0.88400 0.84611 0.84874 1.90550 1.13653 1.86939 1.55267 1.21806 0.94349 0.91201 1.01193 1.60010 1.18192 0.98950 1.51674 1.21906 0.96004 0.90136 0.95520 0.92015 1.22061 0.87010 0.98552 0.91178 1.86599 1.30779 1.92229 1.26208 1.21585 1.00133 0.96711 0.81762 1.45933 1.49784 1.22796 1.18736 1.17937 0.78852 0.84306 0.84165 1.90809 1.55555 1.22235 1.71205 1.20219 0.97187 0.94672 0.94819 1.22459 1.01111 0.96107 0.97475 1.22601 0.90830 0.97866 0.90311 1.66923 1.12494 1.03965 1.38018 1.17990 0.91230 0.88030 0.87488 1.91656 1.69053 1.71992 1.75968 1.21919 0.98456 1.02651 0.92982 0.91821 0.77499 0.93848 0.89482 0.83121 0.93589 0.92916 0.77986 0.90541 0.88615 0.76411 0.83260 0.80456 0.82094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.62 13.05 55.50 0.72 -22.90 16 2 C 0.02 0.60 5.50 -17.47 -0.10 0.51 16 3 Si 0.93 20.42 29.55 -169.99 -5.02 15.40 16 4 H -0.28 -6.08 7.11 56.52 0.40 -5.67 16 5 H -0.28 -6.10 7.11 56.52 0.40 -5.69 16 6 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 7 C -0.30 -8.04 9.68 -14.93 -0.14 -8.18 16 8 H 0.10 2.92 7.16 -52.48 -0.38 2.54 16 9 N -0.56 -13.42 5.29 -10.96 -0.06 -13.48 16 10 C 0.44 9.64 7.82 -10.98 -0.09 9.55 16 11 O -0.58 -15.02 15.78 5.54 0.09 -14.93 16 12 C 0.05 0.73 5.96 -4.98 -0.03 0.70 16 13 N -0.65 -9.37 5.87 -107.99 -0.63 -10.01 16 14 C 0.07 0.78 2.60 -67.71 -0.18 0.61 16 15 H 0.06 0.53 7.80 -51.93 -0.40 0.12 16 16 C 0.09 0.88 6.80 37.16 0.25 1.14 16 17 O -0.55 -6.31 12.64 -35.23 -0.45 -6.76 16 18 C 0.12 1.28 5.20 -4.04 -0.02 1.26 16 19 N -0.72 -7.18 4.95 -61.15 -0.30 -7.48 16 20 C 0.56 6.50 7.80 -12.19 -0.10 6.41 16 21 O -0.52 -7.65 16.44 5.35 0.09 -7.56 16 22 C -0.06 -0.58 5.91 -104.66 -0.62 -1.20 16 23 C -0.15 -1.23 9.61 -39.03 -0.38 -1.60 16 24 C 0.14 1.19 11.17 -17.60 -0.20 0.99 16 25 N -0.50 -5.48 10.35 -13.64 -0.14 -5.62 16 26 C 0.31 3.33 8.41 -17.39 -0.15 3.18 16 27 F -0.11 -1.20 17.29 2.25 0.04 -1.16 16 28 C -0.14 -1.40 9.66 -38.94 -0.38 -1.78 16 29 H 0.27 6.76 8.31 -40.82 -0.34 6.42 16 30 H 0.39 8.89 7.90 -40.82 -0.32 8.57 16 31 H 0.04 0.56 8.05 -51.93 -0.42 0.14 16 32 H 0.09 1.25 7.36 -51.93 -0.38 0.87 16 33 H 0.35 5.10 6.41 -39.29 -0.25 4.85 16 34 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 35 H 0.05 0.52 7.35 -51.93 -0.38 0.14 16 36 H 0.37 2.62 9.12 45.56 0.42 3.03 16 37 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.10 1.27 7.39 -51.93 -0.38 0.88 16 39 H 0.40 3.35 5.51 -40.82 -0.22 3.12 16 40 H 0.15 0.89 6.53 -52.49 -0.34 0.54 16 41 H 0.18 0.98 8.06 -52.48 -0.42 0.56 16 42 H 0.16 1.53 7.74 -52.49 -0.41 1.12 16 LS Contribution 369.63 15.07 5.57 5.57 Total: -1.00 -34.99 369.63 -6.09 -41.08 By element: Atomic # 1 Polarization: 20.15 SS G_CDS: -3.88 Total: 16.27 kcal Atomic # 6 Polarization: 13.68 SS G_CDS: -2.11 Total: 11.57 kcal Atomic # 7 Polarization: -59.07 SS G_CDS: -0.41 Total: -59.49 kcal Atomic # 8 Polarization: -28.98 SS G_CDS: -0.27 Total: -29.25 kcal Atomic # 9 Polarization: -1.20 SS G_CDS: 0.04 Total: -1.16 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -5.02 Total: 15.40 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -34.99 -6.09 -41.08 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001571424474.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.738 kcal (2) G-P(sol) polarization free energy of solvation -34.992 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.731 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.079 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.818 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds