Wall clock time and date at job start Wed Apr 1 2020 00:06:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38099 * 120.07956 * 2 1 4 4 Cl 1.73602 * 119.93954 * 359.94852 * 3 2 1 5 5 C 1.38451 * 120.12028 * 180.23506 * 3 2 1 6 6 C 1.38365 * 120.27489 * 359.48246 * 5 3 2 7 7 C 1.37937 * 120.15924 * 0.51345 * 6 5 3 8 8 C 1.39541 * 120.08258 * 179.97438 * 2 1 3 9 9 C 1.47852 * 120.13741 * 0.04536 * 8 2 1 10 10 O 1.21547 * 120.00108 * 305.93437 * 9 8 2 11 11 N 1.34776 * 119.99815 * 125.93028 * 9 8 2 12 12 C 1.46498 * 120.00011 * 4.38150 * 11 9 8 13 13 C 1.46501 * 119.99773 * 184.37683 * 11 9 8 14 14 C 1.52999 * 109.47201 * 90.00548 * 13 11 9 15 15 O 1.42898 * 109.47101 * 64.99620 * 14 13 11 16 16 C 1.42899 * 113.99739 * 180.02562 * 15 14 13 17 17 C 1.53006 * 109.47249 * 180.02562 * 16 15 14 18 18 N 1.46506 * 109.46709 * 64.99893 * 17 16 15 19 19 C 1.36942 * 119.99476 * 180.02562 * 18 17 16 20 20 H 1.08000 * 120.00054 * 0.02562 * 19 18 17 21 21 C 1.38807 * 119.99535 * 179.97438 * 19 18 17 22 22 N 1.31621 * 120.00422 * 0.02562 * 21 19 18 23 23 Si 1.86802 * 119.99857 * 179.97438 * 21 19 18 24 24 H 1.48504 * 109.46591 * 90.00546 * 23 21 19 25 25 H 1.48496 * 109.47441 * 210.00408 * 23 21 19 26 26 H 1.48496 * 109.47322 * 330.00955 * 23 21 19 27 27 H 1.08999 * 109.46862 * 85.16410 * 1 2 3 28 28 H 1.09003 * 109.46787 * 205.16433 * 1 2 3 29 29 H 1.08994 * 109.47397 * 325.15756 * 1 2 3 30 30 H 1.07993 * 119.85954 * 179.74184 * 5 3 2 31 31 H 1.07992 * 119.91839 * 180.26210 * 6 5 3 32 32 H 1.08004 * 120.05750 * 179.72575 * 7 6 5 33 33 H 1.08995 * 109.47506 * 84.68463 * 12 11 9 34 34 H 1.09003 * 109.47031 * 204.68247 * 12 11 9 35 35 H 1.09001 * 109.47557 * 324.67724 * 12 11 9 36 36 H 1.09000 * 109.47002 * 210.00141 * 13 11 9 37 37 H 1.08996 * 109.47160 * 329.99751 * 13 11 9 38 38 H 1.08996 * 109.47413 * 184.99993 * 14 13 11 39 39 H 1.09005 * 109.46548 * 305.00052 * 14 13 11 40 40 H 1.09001 * 109.47447 * 299.99931 * 16 15 14 41 41 H 1.09001 * 109.47126 * 60.00350 * 16 15 14 42 42 H 1.08994 * 109.47171 * 185.00200 * 17 16 15 43 43 H 1.09001 * 109.47074 * 305.00485 * 17 16 15 44 44 H 0.96996 * 120.00061 * 0.02562 * 18 17 16 45 45 H 0.96993 * 120.00060 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1992 1.1950 0.0000 4 17 1.3317 2.6987 -0.0014 5 6 3.5837 1.1960 -0.0049 6 6 4.2821 0.0016 0.0009 7 6 3.6024 -1.1987 0.0010 8 6 2.2065 -1.2075 0.0005 9 6 1.4721 -2.4907 0.0001 10 8 0.6335 -2.7114 0.8518 11 7 1.7326 -3.4158 -0.9448 12 6 2.8088 -3.1910 -1.9130 13 6 0.9395 -4.6462 -1.0036 14 6 -0.2714 -4.4294 -1.9134 15 8 0.1734 -4.2020 -3.2522 16 6 -0.8852 -3.9862 -4.1875 17 6 -0.2959 -3.7554 -5.5805 18 7 0.3790 -4.9745 -6.0333 19 6 0.9862 -5.0054 -7.2603 20 1 0.9679 -4.1310 -7.8941 21 6 1.6260 -6.1602 -7.6891 22 7 1.6487 -7.2256 -6.9165 23 14 2.4538 -6.2027 -9.3631 24 1 3.8671 -5.7674 -9.2276 25 1 2.4113 -7.5860 -9.9015 26 1 1.7411 -5.2883 -10.2911 27 1 -0.3633 0.0866 -1.0240 28 1 -0.3633 -0.9302 0.4370 29 1 -0.3634 0.8434 0.5871 30 1 4.1207 2.1330 -0.0091 31 1 5.3620 0.0091 0.0013 32 1 4.1492 -2.1300 0.0011 33 1 3.7579 -3.5090 -1.4817 34 1 2.6099 -3.7662 -2.8173 35 1 2.8593 -2.1307 -2.1606 36 1 1.5525 -5.4549 -1.4013 37 1 0.5991 -4.9072 -0.0016 38 1 -0.9083 -5.3135 -1.8874 39 1 -0.8363 -3.5642 -1.5663 40 1 -1.5352 -4.8609 -4.2088 41 1 -1.4625 -3.1117 -3.8875 42 1 -1.0960 -3.5032 -6.2763 43 1 0.4222 -2.9363 -5.5401 44 1 0.3957 -5.7596 -5.4639 45 1 2.0955 -8.0326 -7.2163 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001571674172.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:06:08 Heat of formation + Delta-G solvation = -46.579403 kcal Electronic energy + Delta-G solvation = -27304.003317 eV Core-core repulsion = 23348.064200 eV Total energy + Delta-G solvation = -3955.939118 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.134 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.78831 -38.92388 -37.70628 -36.72695 -35.71502 -34.38817 -33.10209 -31.94745 -31.26493 -29.68887 -27.64848 -27.46368 -26.46124 -24.29605 -23.50461 -22.71628 -21.81978 -21.14087 -19.66922 -17.71130 -17.16550 -16.86185 -16.50984 -16.22593 -15.97465 -15.78952 -15.13118 -14.94248 -14.53612 -14.35910 -13.98012 -13.87766 -13.59743 -13.23049 -13.07304 -12.95267 -12.71856 -12.62993 -12.54154 -12.33741 -12.04886 -11.86849 -11.79424 -11.69943 -11.62617 -11.33901 -11.12380 -10.90945 -10.80713 -10.50116 -10.03250 -9.98938 -9.70162 -9.25119 -9.20414 -9.00449 -8.87116 -8.73661 -6.88267 -5.73404 -3.01457 0.56853 0.81086 1.75715 2.45031 2.84903 3.27019 3.44451 3.49581 3.51280 3.98883 4.18849 4.37403 4.54764 4.61542 4.61792 4.91648 5.08423 5.12881 5.20247 5.27982 5.30704 5.34221 5.45363 5.46096 5.48677 5.54770 5.57742 5.62496 5.70941 5.77822 5.82031 5.90275 5.92144 5.94244 6.01305 6.04714 6.31890 6.34906 6.41302 6.60888 6.75043 7.21904 7.57437 7.71599 7.95344 8.45309 9.56890 10.15365 10.51543 11.49420 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.013030 B = 0.002554 C = 0.002451 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2148.420334 B =10962.357874 C =11420.652985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.025 4.025 3 C -0.044 4.044 4 Cl -0.063 7.063 5 C -0.089 4.089 6 C -0.118 4.118 7 C -0.079 4.079 8 C -0.113 4.113 9 C 0.563 3.437 10 O -0.536 6.536 11 N -0.594 5.594 12 C 0.075 3.925 13 C 0.118 3.882 14 C 0.045 3.955 15 O -0.370 6.370 16 C 0.059 3.941 17 C 0.155 3.845 18 N -0.727 5.727 19 C -0.238 4.238 20 H 0.069 0.931 21 C -0.014 4.014 22 N -0.932 5.932 23 Si 0.906 3.094 24 H -0.290 1.290 25 H -0.292 1.292 26 H -0.282 1.282 27 H 0.077 0.923 28 H 0.093 0.907 29 H 0.076 0.924 30 H 0.137 0.863 31 H 0.138 0.862 32 H 0.136 0.864 33 H 0.054 0.946 34 H 0.097 0.903 35 H 0.068 0.932 36 H 0.093 0.907 37 H 0.098 0.902 38 H 0.058 0.942 39 H 0.045 0.955 40 H 0.048 0.952 41 H 0.041 0.959 42 H 0.031 0.969 43 H 0.025 0.975 44 H 0.387 0.613 45 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.216 15.557 18.143 24.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.027 4.027 3 C -0.071 4.071 4 Cl -0.034 7.034 5 C -0.108 4.108 6 C -0.136 4.136 7 C -0.098 4.098 8 C -0.116 4.116 9 C 0.350 3.650 10 O -0.414 6.414 11 N -0.326 5.326 12 C -0.067 4.067 13 C -0.005 4.005 14 C -0.033 4.033 15 O -0.289 6.289 16 C -0.018 4.018 17 C 0.027 3.973 18 N -0.372 5.372 19 C -0.369 4.369 20 H 0.087 0.913 21 C -0.210 4.210 22 N -0.581 5.581 23 Si 0.737 3.263 24 H -0.218 1.218 25 H -0.218 1.218 26 H -0.208 1.208 27 H 0.096 0.904 28 H 0.111 0.889 29 H 0.095 0.905 30 H 0.155 0.845 31 H 0.156 0.844 32 H 0.154 0.846 33 H 0.073 0.927 34 H 0.115 0.885 35 H 0.087 0.913 36 H 0.112 0.888 37 H 0.116 0.884 38 H 0.076 0.924 39 H 0.064 0.936 40 H 0.066 0.934 41 H 0.060 0.940 42 H 0.049 0.951 43 H 0.043 0.957 44 H 0.221 0.779 45 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 1.936 15.595 18.353 24.161 hybrid contribution 0.267 -0.132 -0.825 0.877 sum 2.202 15.463 17.528 23.477 Atomic orbital electron populations 1.21135 0.89691 1.05274 1.03316 1.19689 0.97105 0.89965 0.95931 1.20673 0.92442 0.86814 1.07129 1.98368 1.76917 1.31256 1.96893 1.21211 0.91789 0.99535 0.98261 1.21041 1.00495 0.91238 1.00831 1.21429 0.92571 0.99208 0.96573 1.19670 0.93928 0.92823 1.05218 1.18227 0.82256 0.83280 0.81200 1.90746 1.34348 1.78819 1.37513 1.47710 1.34874 1.19233 1.30754 1.22029 0.88403 1.02998 0.93318 1.21626 0.92670 0.86152 1.00013 1.22852 0.96420 0.99982 0.84078 1.87998 1.32378 1.92474 1.16077 1.22777 0.89829 0.98838 0.90340 1.20682 0.95335 0.91569 0.89681 1.42287 1.65001 1.10828 1.19054 1.19235 1.26749 0.97466 0.93448 0.91298 1.24724 1.01625 0.96163 0.98511 1.69669 1.48742 1.02770 1.36950 0.86204 0.79480 0.76684 0.83915 1.21761 1.21827 1.20816 0.90403 0.88866 0.90517 0.84544 0.84372 0.84600 0.92716 0.88484 0.91285 0.88847 0.88425 0.92423 0.93638 0.93383 0.94034 0.95113 0.95699 0.77937 0.93609 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.53 9.20 36.01 0.33 -1.20 16 2 C -0.03 -0.29 5.91 -104.19 -0.62 -0.90 16 3 C -0.04 -0.44 6.31 -39.55 -0.25 -0.69 16 4 Cl -0.06 -0.59 27.39 -51.86 -1.42 -2.01 16 5 C -0.09 -0.73 9.82 -39.46 -0.39 -1.12 16 6 C -0.12 -0.89 10.03 -39.64 -0.40 -1.29 16 7 C -0.08 -0.72 7.96 -39.19 -0.31 -1.03 16 8 C -0.11 -1.30 4.71 -104.97 -0.49 -1.79 16 9 C 0.56 7.43 6.55 -12.33 -0.08 7.34 16 10 O -0.54 -8.35 14.62 5.32 0.08 -8.27 16 11 N -0.59 -7.40 2.84 -182.70 -0.52 -7.92 16 12 C 0.08 0.86 8.93 59.85 0.53 1.39 16 13 C 0.12 1.45 5.82 -4.04 -0.02 1.43 16 14 C 0.04 0.61 6.28 37.16 0.23 0.84 16 15 O -0.37 -6.26 9.21 -35.23 -0.32 -6.58 16 16 C 0.06 0.99 6.07 37.16 0.23 1.22 16 17 C 0.16 3.17 6.65 -4.04 -0.03 3.14 16 18 N -0.73 -18.66 5.55 -59.90 -0.33 -18.99 16 19 C -0.24 -6.69 9.99 -15.06 -0.15 -6.84 16 20 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 21 C -0.01 -0.42 5.50 -17.43 -0.10 -0.51 16 22 N -0.93 -28.21 13.06 55.49 0.72 -27.49 16 23 Si 0.91 22.38 29.55 -169.99 -5.02 17.36 16 24 H -0.29 -7.12 7.11 56.52 0.40 -6.71 16 25 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 26 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 27 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 28 H 0.09 1.18 5.53 -51.93 -0.29 0.90 16 29 H 0.08 0.76 7.12 -51.93 -0.37 0.39 16 30 H 0.14 0.83 8.06 -52.49 -0.42 0.41 16 31 H 0.14 0.67 8.06 -52.49 -0.42 0.25 16 32 H 0.14 1.02 6.82 -52.48 -0.36 0.66 16 33 H 0.05 0.50 7.28 -51.93 -0.38 0.12 16 34 H 0.10 1.35 7.23 -51.93 -0.38 0.98 16 35 H 0.07 0.76 6.48 -51.93 -0.34 0.43 16 36 H 0.09 1.12 8.07 -51.93 -0.42 0.70 16 37 H 0.10 1.14 7.36 -51.93 -0.38 0.76 16 38 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 39 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 41 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 42 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 43 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 44 H 0.39 10.50 7.67 -40.82 -0.31 10.19 16 45 H 0.25 7.42 8.31 -40.82 -0.34 7.08 16 LS Contribution 386.07 15.07 5.82 5.82 Total: -1.00 -32.87 386.07 -9.08 -41.95 By element: Atomic # 1 Polarization: 12.72 SS G_CDS: -6.57 Total: 6.15 kcal Atomic # 6 Polarization: 1.50 SS G_CDS: -1.51 Total: -0.01 kcal Atomic # 7 Polarization: -54.27 SS G_CDS: -0.13 Total: -54.39 kcal Atomic # 8 Polarization: -14.61 SS G_CDS: -0.25 Total: -14.85 kcal Atomic # 14 Polarization: 22.38 SS G_CDS: -5.02 Total: 17.36 kcal Atomic # 17 Polarization: -0.59 SS G_CDS: -1.42 Total: -2.01 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -32.87 -9.08 -41.95 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001571674172.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.631 kcal (2) G-P(sol) polarization free energy of solvation -32.870 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.501 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.948 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.579 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds