Wall clock time and date at job start Wed Apr 1 2020 00:06:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38099 * 120.07956 * 2 1 4 4 Cl 1.73602 * 119.93954 * 359.94852 * 3 2 1 5 5 C 1.38451 * 120.12028 * 180.23506 * 3 2 1 6 6 C 1.38365 * 120.27489 * 359.48246 * 5 3 2 7 7 C 1.37937 * 120.15924 * 0.51345 * 6 5 3 8 8 C 1.39541 * 120.08258 * 179.97438 * 2 1 3 9 9 C 1.47852 * 120.13741 * 0.04536 * 8 2 1 10 10 O 1.21547 * 120.00108 * 305.93437 * 9 8 2 11 11 N 1.34776 * 119.99815 * 125.93028 * 9 8 2 12 12 C 1.46498 * 120.00011 * 4.38150 * 11 9 8 13 13 C 1.46501 * 119.99773 * 184.37683 * 11 9 8 14 14 C 1.52999 * 109.47201 * 90.00548 * 13 11 9 15 15 O 1.42898 * 109.47101 * 64.99620 * 14 13 11 16 16 C 1.42899 * 113.99739 * 180.02562 * 15 14 13 17 17 C 1.53006 * 109.47249 * 180.02562 * 16 15 14 18 18 N 1.46506 * 109.46709 * 64.99893 * 17 16 15 19 19 C 1.36942 * 119.99476 * 180.02562 * 18 17 16 20 20 H 1.08000 * 120.00054 * 0.02562 * 19 18 17 21 21 C 1.38807 * 119.99535 * 179.97438 * 19 18 17 22 22 N 1.31621 * 120.00422 * 0.02562 * 21 19 18 23 23 Si 1.86802 * 119.99857 * 179.97438 * 21 19 18 24 24 H 1.48504 * 109.46591 * 90.00546 * 23 21 19 25 25 H 1.48496 * 109.47441 * 210.00408 * 23 21 19 26 26 H 1.48496 * 109.47322 * 330.00955 * 23 21 19 27 27 H 1.08999 * 109.46862 * 85.16410 * 1 2 3 28 28 H 1.09003 * 109.46787 * 205.16433 * 1 2 3 29 29 H 1.08994 * 109.47397 * 325.15756 * 1 2 3 30 30 H 1.07993 * 119.85954 * 179.74184 * 5 3 2 31 31 H 1.07992 * 119.91839 * 180.26210 * 6 5 3 32 32 H 1.08004 * 120.05750 * 179.72575 * 7 6 5 33 33 H 1.08995 * 109.47506 * 84.68463 * 12 11 9 34 34 H 1.09003 * 109.47031 * 204.68247 * 12 11 9 35 35 H 1.09001 * 109.47557 * 324.67724 * 12 11 9 36 36 H 1.09000 * 109.47002 * 210.00141 * 13 11 9 37 37 H 1.08996 * 109.47160 * 329.99751 * 13 11 9 38 38 H 1.08996 * 109.47413 * 184.99993 * 14 13 11 39 39 H 1.09005 * 109.46548 * 305.00052 * 14 13 11 40 40 H 1.09001 * 109.47447 * 299.99931 * 16 15 14 41 41 H 1.09001 * 109.47126 * 60.00350 * 16 15 14 42 42 H 1.08994 * 109.47171 * 185.00200 * 17 16 15 43 43 H 1.09001 * 109.47074 * 305.00485 * 17 16 15 44 44 H 0.96996 * 120.00061 * 0.02562 * 18 17 16 45 45 H 0.96993 * 120.00060 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1992 1.1950 0.0000 4 17 1.3317 2.6987 -0.0014 5 6 3.5837 1.1960 -0.0049 6 6 4.2821 0.0016 0.0009 7 6 3.6024 -1.1987 0.0010 8 6 2.2065 -1.2075 0.0005 9 6 1.4721 -2.4907 0.0001 10 8 0.6335 -2.7114 0.8518 11 7 1.7326 -3.4158 -0.9448 12 6 2.8088 -3.1910 -1.9130 13 6 0.9395 -4.6462 -1.0036 14 6 -0.2714 -4.4294 -1.9134 15 8 0.1734 -4.2020 -3.2522 16 6 -0.8852 -3.9862 -4.1875 17 6 -0.2959 -3.7554 -5.5805 18 7 0.3790 -4.9745 -6.0333 19 6 0.9862 -5.0054 -7.2603 20 1 0.9679 -4.1310 -7.8941 21 6 1.6260 -6.1602 -7.6891 22 7 1.6487 -7.2256 -6.9165 23 14 2.4538 -6.2027 -9.3631 24 1 3.8671 -5.7674 -9.2276 25 1 2.4113 -7.5860 -9.9015 26 1 1.7411 -5.2883 -10.2911 27 1 -0.3633 0.0866 -1.0240 28 1 -0.3633 -0.9302 0.4370 29 1 -0.3634 0.8434 0.5871 30 1 4.1207 2.1330 -0.0091 31 1 5.3620 0.0091 0.0013 32 1 4.1492 -2.1300 0.0011 33 1 3.7579 -3.5090 -1.4817 34 1 2.6099 -3.7662 -2.8173 35 1 2.8593 -2.1307 -2.1606 36 1 1.5525 -5.4549 -1.4013 37 1 0.5991 -4.9072 -0.0016 38 1 -0.9083 -5.3135 -1.8874 39 1 -0.8363 -3.5642 -1.5663 40 1 -1.5352 -4.8609 -4.2088 41 1 -1.4625 -3.1117 -3.8875 42 1 -1.0960 -3.5032 -6.2763 43 1 0.4222 -2.9363 -5.5401 44 1 0.3957 -5.7596 -5.4639 45 1 2.0955 -8.0326 -7.2163 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001571674172.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:06:07 Heat of formation + Delta-G solvation = -66.373783 kcal Electronic energy + Delta-G solvation = -27304.861666 eV Core-core repulsion = 23348.064200 eV Total energy + Delta-G solvation = -3956.797466 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.134 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.67837 -39.79449 -38.95749 -37.45242 -36.88993 -36.15442 -33.85565 -33.47915 -32.51411 -30.82801 -29.26501 -28.28649 -27.43001 -25.54842 -25.14482 -23.59902 -22.79347 -22.60338 -20.57301 -19.23246 -18.62788 -17.86162 -17.56597 -17.10234 -17.02805 -16.91132 -16.45068 -16.00272 -15.91035 -15.45327 -15.15113 -15.13314 -14.67747 -14.58868 -14.32004 -14.22985 -13.95913 -13.51485 -13.44359 -13.30954 -13.17228 -13.04140 -12.83308 -12.73449 -12.73022 -12.59971 -12.50637 -12.36122 -12.11874 -11.90863 -11.85517 -11.68490 -10.99844 -10.94848 -10.51571 -9.95245 -9.74461 -9.71637 -8.96661 -7.91328 -5.19944 -0.16814 0.10088 1.02328 1.49386 1.51040 1.51233 1.59477 1.92934 2.52597 2.58542 2.76480 3.33130 3.42428 3.66045 3.86427 3.93876 3.95755 4.04185 4.10923 4.25986 4.26987 4.33092 4.42848 4.45902 4.50013 4.53024 4.55810 4.58755 4.62400 4.65465 4.66740 4.81415 4.97122 5.03628 5.09221 5.13498 5.13680 5.23815 5.25551 5.41134 5.51000 5.66980 6.21202 6.29639 6.35629 6.96399 7.36987 8.12292 8.37360 9.32146 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.013030 B = 0.002554 C = 0.002451 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2148.420334 B =10962.357874 C =11420.652985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.045 4.045 3 C -0.055 4.055 4 Cl -0.063 7.063 5 C -0.085 4.085 6 C -0.108 4.108 7 C -0.080 4.080 8 C -0.134 4.134 9 C 0.562 3.438 10 O -0.567 6.567 11 N -0.595 5.595 12 C 0.081 3.919 13 C 0.118 3.882 14 C 0.046 3.954 15 O -0.390 6.390 16 C 0.067 3.933 17 C 0.152 3.848 18 N -0.739 5.739 19 C -0.245 4.245 20 H 0.075 0.925 21 C -0.075 4.075 22 N -0.968 5.968 23 Si 0.973 3.027 24 H -0.286 1.286 25 H -0.296 1.296 26 H -0.270 1.270 27 H 0.076 0.924 28 H 0.073 0.927 29 H 0.083 0.917 30 H 0.161 0.839 31 H 0.173 0.827 32 H 0.152 0.848 33 H 0.081 0.919 34 H 0.069 0.931 35 H 0.072 0.928 36 H 0.095 0.905 37 H 0.104 0.896 38 H 0.068 0.932 39 H 0.044 0.956 40 H 0.048 0.952 41 H 0.070 0.930 42 H 0.041 0.959 43 H 0.022 0.978 44 H 0.376 0.624 45 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.642 16.969 18.036 25.030 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.047 4.047 3 C -0.081 4.081 4 Cl -0.034 7.034 5 C -0.104 4.104 6 C -0.126 4.126 7 C -0.098 4.098 8 C -0.137 4.137 9 C 0.351 3.649 10 O -0.448 6.448 11 N -0.325 5.325 12 C -0.062 4.062 13 C -0.004 4.004 14 C -0.031 4.031 15 O -0.309 6.309 16 C -0.010 4.010 17 C 0.026 3.974 18 N -0.382 5.382 19 C -0.377 4.377 20 H 0.092 0.908 21 C -0.267 4.267 22 N -0.619 5.619 23 Si 0.802 3.198 24 H -0.213 1.213 25 H -0.222 1.222 26 H -0.195 1.195 27 H 0.094 0.906 28 H 0.092 0.908 29 H 0.102 0.898 30 H 0.179 0.821 31 H 0.190 0.810 32 H 0.169 0.831 33 H 0.099 0.901 34 H 0.088 0.912 35 H 0.091 0.909 36 H 0.114 0.886 37 H 0.122 0.878 38 H 0.086 0.914 39 H 0.063 0.937 40 H 0.066 0.934 41 H 0.088 0.912 42 H 0.059 0.941 43 H 0.040 0.960 44 H 0.208 0.792 45 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 3.352 17.052 18.237 25.192 hybrid contribution -0.183 -0.492 -0.742 0.909 sum 3.169 16.560 17.496 24.298 Atomic orbital electron populations 1.21038 0.90279 1.04437 1.03112 1.19761 0.97033 0.90680 0.97230 1.20810 0.93296 0.86417 1.07614 1.98365 1.77113 1.30962 1.96919 1.21584 0.91086 1.00994 0.96731 1.21441 1.02109 0.90181 0.98854 1.21672 0.91570 1.00699 0.95862 1.19650 0.95022 0.91813 1.07241 1.18528 0.81868 0.83801 0.80670 1.90720 1.35812 1.79496 1.38766 1.47780 1.34976 1.19099 1.30671 1.22011 0.89145 1.02816 0.92198 1.21627 0.92409 0.86379 1.00013 1.22955 0.97149 1.00360 0.82684 1.87971 1.32909 1.92703 1.17359 1.22635 0.89596 1.00074 0.88670 1.20837 0.95093 0.89439 0.92037 1.42470 1.65344 1.12066 1.18354 1.19636 1.26166 0.97539 0.94347 0.90754 1.25548 1.02908 0.95981 1.02246 1.69826 1.50014 1.03240 1.38772 0.85150 0.78456 0.76446 0.79760 1.21302 1.22245 1.19508 0.90578 0.90828 0.89849 0.82130 0.80951 0.83084 0.90106 0.91179 0.90885 0.88641 0.87766 0.91361 0.93747 0.93389 0.91211 0.94108 0.95998 0.79216 0.94063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.00 9.20 71.24 0.66 -2.34 16 2 C -0.05 -1.01 5.91 -19.58 -0.12 -1.13 16 3 C -0.05 -1.02 6.31 22.29 0.14 -0.88 16 4 Cl -0.06 -1.10 27.39 -2.72 -0.07 -1.18 16 5 C -0.09 -1.17 9.82 22.35 0.22 -0.95 16 6 C -0.11 -1.28 10.03 22.23 0.22 -1.06 16 7 C -0.08 -1.27 7.96 22.53 0.18 -1.09 16 8 C -0.13 -2.99 4.71 -20.09 -0.09 -3.08 16 9 C 0.56 14.83 6.55 86.79 0.57 15.40 16 10 O -0.57 -18.06 14.62 -3.86 -0.06 -18.12 16 11 N -0.59 -14.64 2.84 -850.21 -2.41 -17.05 16 12 C 0.08 1.78 8.93 127.77 1.14 2.93 16 13 C 0.12 2.91 5.82 86.38 0.50 3.42 16 14 C 0.05 1.25 6.28 71.98 0.45 1.70 16 15 O -0.39 -13.12 9.21 -148.98 -1.37 -14.49 16 16 C 0.07 2.20 6.07 71.98 0.44 2.63 16 17 C 0.15 6.15 6.65 86.38 0.57 6.72 16 18 N -0.74 -38.06 5.55 -343.43 -1.91 -39.97 16 19 C -0.25 -13.76 9.99 84.03 0.84 -12.92 16 20 H 0.07 4.00 7.83 -2.91 -0.02 3.98 16 21 C -0.07 -4.28 5.50 84.86 0.47 -3.82 16 22 N -0.97 -59.17 13.06 21.65 0.28 -58.89 16 23 Si 0.97 45.89 29.55 68.60 2.03 47.92 16 24 H -0.29 -13.19 7.11 99.48 0.71 -12.49 16 25 H -0.30 -14.03 7.11 99.48 0.71 -13.33 16 26 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 27 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 28 H 0.07 1.96 5.53 -2.39 -0.01 1.94 16 29 H 0.08 1.69 7.12 -2.39 -0.02 1.67 16 30 H 0.16 1.38 8.06 -2.91 -0.02 1.36 16 31 H 0.17 0.87 8.06 -2.91 -0.02 0.84 16 32 H 0.15 1.87 6.82 -2.91 -0.02 1.85 16 33 H 0.08 1.34 7.28 -2.39 -0.02 1.32 16 34 H 0.07 1.96 7.23 -2.39 -0.02 1.95 16 35 H 0.07 1.55 6.48 -2.39 -0.02 1.53 16 36 H 0.10 2.30 8.07 -2.39 -0.02 2.28 16 37 H 0.10 2.44 7.36 -2.39 -0.02 2.42 16 38 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 39 H 0.04 1.21 8.14 -2.38 -0.02 1.19 16 40 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 41 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 42 H 0.04 1.58 8.14 -2.39 -0.02 1.57 16 43 H 0.02 0.91 8.14 -2.39 -0.02 0.89 16 44 H 0.38 20.72 7.67 -92.71 -0.71 20.01 16 45 H 0.25 14.82 8.31 -92.71 -0.77 14.05 16 Total: -1.00 -70.78 386.07 2.97 -67.81 By element: Atomic # 1 Polarization: 28.14 SS G_CDS: 0.30 Total: 28.43 kcal Atomic # 6 Polarization: -0.66 SS G_CDS: 6.19 Total: 5.53 kcal Atomic # 7 Polarization: -111.87 SS G_CDS: -4.04 Total: -115.90 kcal Atomic # 8 Polarization: -31.18 SS G_CDS: -1.43 Total: -32.61 kcal Atomic # 14 Polarization: 45.89 SS G_CDS: 2.03 Total: 47.92 kcal Atomic # 17 Polarization: -1.10 SS G_CDS: -0.07 Total: -1.18 kcal Total: -70.78 2.97 -67.81 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001571674172.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.436 kcal (2) G-P(sol) polarization free energy of solvation -70.784 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.810 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.374 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds