Wall clock time and date at job start Tue Mar 31 2020 23:37:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86802 * 119.99984 * 2 1 4 4 H 1.48503 * 109.46823 * 239.99835 * 3 2 1 5 5 H 1.48493 * 109.47153 * 0.02562 * 3 2 1 6 6 H 1.48506 * 109.47051 * 120.00068 * 3 2 1 7 7 C 1.38801 * 119.99850 * 179.97438 * 2 1 3 8 8 H 1.08011 * 119.99710 * 179.97438 * 7 2 1 9 9 S 1.76194 * 120.00222 * 0.02562 * 7 2 1 10 10 C 1.81004 * 100.00126 * 179.97438 * 9 7 2 11 11 C 1.50697 * 109.47221 * 179.97438 * 10 9 7 12 12 O 1.21288 * 119.99752 * 0.02562 * 11 10 9 13 13 N 1.34771 * 120.00007 * 180.02562 * 11 10 9 14 14 C 1.46503 * 120.00140 * 180.02562 * 13 11 10 15 15 C 1.53001 * 109.47342 * 179.97438 * 14 13 11 16 16 N 1.46500 * 109.46984 * 179.97438 * 15 14 13 17 17 C 1.34775 * 119.99952 * 180.02562 * 16 15 14 18 18 O 1.21290 * 119.99817 * 359.97438 * 17 16 15 19 19 C 1.50702 * 120.00332 * 180.02562 * 17 16 15 20 20 H 1.08997 * 110.66886 * 56.77744 * 19 17 16 21 21 C 1.55004 * 110.74124 * 293.36308 * 19 17 16 22 22 C 1.55825 * 102.78537 * 241.66998 * 21 19 17 23 23 H 1.09003 * 115.93203 * 158.43605 * 22 21 19 24 24 O 1.46538 * 101.24071 * 32.42277 * 22 21 19 25 25 C 1.46528 * 99.68562 * 305.83696 * 24 22 21 26 26 H 1.08998 * 115.68284 * 179.65507 * 25 24 22 27 27 C 1.59013 * 101.72972 * 306.15608 * 25 24 22 28 28 H 1.09001 * 120.72253 * 171.86350 * 27 25 24 29 29 C 1.53004 * 115.33099 * 330.17580 * 27 25 24 30 30 C 1.53006 * 60.86551 * 88.51306 * 29 27 25 31 31 H 1.08998 * 120.22408 * 113.05643 * 30 29 27 32 32 H 0.97001 * 120.00262 * 359.97438 * 1 2 3 33 33 H 1.09001 * 109.46529 * 60.00253 * 10 9 7 34 34 H 1.08996 * 109.47504 * 300.00352 * 10 9 7 35 35 H 0.96997 * 120.00494 * 359.97438 * 13 11 10 36 36 H 1.09002 * 109.47180 * 59.99535 * 14 13 11 37 37 H 1.09004 * 109.47015 * 299.99765 * 14 13 11 38 38 H 1.09001 * 109.46792 * 59.99803 * 15 14 13 39 39 H 1.08996 * 109.47252 * 299.99895 * 15 14 13 40 40 H 0.96998 * 120.00423 * 0.02562 * 16 15 14 41 41 H 1.09002 * 110.74627 * 123.35358 * 21 19 17 42 42 H 1.08988 * 110.75363 * 359.97438 * 21 19 17 43 43 H 1.08998 * 117.41061 * 340.77239 * 29 27 25 44 44 H 1.08997 * 117.40647 * 196.25422 * 29 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 3.1041 1.6963 -1.2125 5 1 1.2853 2.7464 0.0006 6 1 3.1041 1.6964 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0904 -1.2020 0.0001 9 16 1.1293 -2.7280 0.0005 10 6 2.5159 -3.8915 0.0005 11 6 1.9874 -5.3027 0.0012 12 8 0.7911 -5.5023 0.0011 13 7 2.8442 -6.3431 0.0018 14 6 2.3304 -7.7151 0.0019 15 6 3.5025 -8.6986 0.0020 16 7 2.9887 -10.0705 0.0026 17 6 3.8454 -11.1109 0.0034 18 8 5.0418 -10.9113 0.0030 19 6 3.3170 -12.5223 0.0035 20 1 2.6593 -12.6869 -0.8499 21 6 2.5855 -12.8344 1.3339 22 6 3.4309 -14.0014 1.9267 23 1 3.3453 -14.1534 3.0027 24 8 4.7698 -13.6612 1.4380 25 6 4.4881 -13.5502 0.0043 26 1 5.3387 -13.2900 -0.6255 27 6 3.8019 -14.9520 -0.2997 28 1 3.3437 -15.1492 -1.2689 29 6 4.2636 -16.1123 0.5843 30 6 3.0930 -15.2428 1.0477 31 1 2.0897 -15.6636 1.1146 32 1 -0.4850 0.8400 0.0004 33 1 3.1244 -3.7313 0.8906 34 1 3.1245 -3.7314 -0.8894 35 1 3.8009 -6.1835 0.0015 36 1 1.7222 -7.8754 -0.8884 37 1 1.7214 -7.8750 0.8916 38 1 4.1110 -8.5384 0.8920 39 1 4.1111 -8.5386 -0.8879 40 1 2.0320 -10.2302 0.0026 41 1 1.5614 -13.1567 1.1451 42 1 2.6036 -11.9695 1.9968 43 1 5.2124 -15.9973 1.1083 44 1 4.0349 -17.1228 0.2458 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001574892018.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:37:48 Heat of formation + Delta-G solvation = -96.334945 kcal Electronic energy + Delta-G solvation = -25750.169236 eV Core-core repulsion = 21794.116262 eV Total energy + Delta-G solvation = -3956.052973 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.52377 -40.75879 -40.23867 -36.98430 -35.32157 -35.08418 -34.57927 -33.31675 -31.55230 -30.35782 -29.16505 -27.64219 -25.42597 -24.08332 -23.31356 -21.99845 -21.45356 -21.24812 -20.75804 -19.86498 -18.48023 -17.97087 -17.79931 -17.26239 -17.10290 -16.96492 -16.86886 -16.55704 -16.16532 -15.69955 -15.48622 -15.10209 -15.06936 -14.71132 -14.40976 -14.25469 -13.75013 -13.58450 -13.39197 -13.16700 -12.99052 -12.91823 -12.86356 -12.75806 -12.62062 -12.43543 -12.28616 -12.08695 -11.74909 -11.29414 -11.12628 -11.08676 -11.02418 -10.75197 -10.64631 -10.28459 -10.27519 -10.15094 -8.66184 -8.34356 -6.12291 1.24538 1.44232 1.44831 1.54323 1.54813 1.57850 1.84058 2.27697 2.46366 2.66601 2.80977 2.99901 3.31527 3.37915 3.46720 3.58567 3.60759 3.81037 3.83669 3.98223 3.98959 4.00245 4.16047 4.21488 4.30745 4.35211 4.39347 4.52362 4.58602 4.67034 4.79623 4.81517 4.84983 4.88398 4.92826 4.96560 5.14271 5.23915 5.31444 5.37970 5.42222 5.54133 6.19918 6.39837 6.46172 7.07149 7.15295 7.18733 8.74518 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.046275 B = 0.001461 C = 0.001439 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 604.938842 B =19165.358202 C =19454.178743 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C 0.015 3.985 3 Si 0.997 3.003 4 H -0.263 1.263 5 H -0.279 1.279 6 H -0.263 1.263 7 C -0.549 4.549 8 H 0.083 0.917 9 S -0.148 6.148 10 C -0.132 4.132 11 C 0.538 3.462 12 O -0.561 6.561 13 N -0.713 5.713 14 C 0.117 3.883 15 C 0.119 3.881 16 N -0.715 5.715 17 C 0.522 3.478 18 O -0.578 6.578 19 C -0.129 4.129 20 H 0.143 0.857 21 C -0.126 4.126 22 C 0.076 3.924 23 H 0.142 0.858 24 O -0.398 6.398 25 C 0.103 3.897 26 H 0.119 0.881 27 C -0.190 4.190 28 H 0.150 0.850 29 C -0.148 4.148 30 C -0.188 4.188 31 H 0.146 0.854 32 H 0.271 0.729 33 H 0.110 0.890 34 H 0.111 0.889 35 H 0.418 0.582 36 H 0.075 0.925 37 H 0.073 0.927 38 H 0.071 0.929 39 H 0.075 0.925 40 H 0.418 0.582 41 H 0.121 0.879 42 H 0.075 0.925 43 H 0.079 0.921 44 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.044 -33.624 0.151 34.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.190 4.190 3 Si 0.819 3.181 4 H -0.187 1.187 5 H -0.204 1.204 6 H -0.188 1.188 7 C -0.697 4.697 8 H 0.101 0.899 9 S 0.079 5.921 10 C -0.283 4.283 11 C 0.324 3.676 12 O -0.439 6.439 13 N -0.368 5.368 14 C -0.008 4.008 15 C -0.005 4.005 16 N -0.368 5.368 17 C 0.310 3.690 18 O -0.457 6.457 19 C -0.150 4.150 20 H 0.160 0.840 21 C -0.163 4.163 22 C 0.019 3.981 23 H 0.160 0.840 24 O -0.317 6.317 25 C 0.045 3.955 26 H 0.137 0.863 27 C -0.208 4.208 28 H 0.168 0.832 29 C -0.184 4.184 30 C -0.206 4.206 31 H 0.164 0.836 32 H 0.080 0.920 33 H 0.129 0.871 34 H 0.129 0.871 35 H 0.255 0.745 36 H 0.093 0.907 37 H 0.092 0.908 38 H 0.090 0.910 39 H 0.094 0.906 40 H 0.255 0.745 41 H 0.139 0.861 42 H 0.094 0.906 43 H 0.098 0.902 44 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 5.967 -33.677 0.285 34.203 hybrid contribution 1.582 1.442 -0.070 2.142 sum 7.549 -32.235 0.215 33.108 Atomic orbital electron populations 1.70167 1.07923 1.28678 1.47901 1.26096 0.95942 1.03225 0.93696 0.85026 0.77830 0.75825 0.79456 1.18714 1.20367 1.18751 1.23189 0.95383 0.92105 1.59036 0.89932 1.85521 1.10407 0.99122 1.97070 1.23383 1.03670 0.94286 1.06959 1.19991 0.86130 0.86524 0.74991 1.90699 1.17220 1.86028 1.49989 1.45529 1.10581 1.04767 1.75901 1.21378 0.96057 0.80019 1.03305 1.21270 0.95439 0.80635 1.03196 1.45681 1.11035 1.04851 1.75248 1.20862 0.85983 0.87632 0.74554 1.90723 1.17549 1.86595 1.50809 1.22981 0.99373 0.89922 1.02699 0.83972 1.23181 1.00795 0.98616 0.93756 1.24548 0.81106 0.92576 0.99845 0.84007 1.90149 1.30032 1.90646 1.20917 1.24625 0.95705 0.92268 0.82888 0.86281 1.24968 1.05089 0.94030 0.96746 0.83236 1.22906 0.98309 0.95681 1.01553 1.24377 0.99691 0.99745 0.96751 0.83589 0.91976 0.87136 0.87083 0.74514 0.90695 0.90847 0.91043 0.90634 0.74476 0.86108 0.90639 0.90243 0.86215 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -55.44 13.22 21.65 0.29 -55.15 16 2 C 0.02 0.87 5.49 84.86 0.47 1.33 16 3 Si 1.00 43.26 29.55 68.60 2.03 45.29 16 4 H -0.26 -10.82 7.11 99.48 0.71 -10.11 16 5 H -0.28 -11.78 7.11 99.48 0.71 -11.07 16 6 H -0.26 -10.85 7.11 99.48 0.71 -10.14 16 7 C -0.55 -31.08 9.50 67.95 0.65 -30.44 16 8 H 0.08 4.33 7.80 -2.90 -0.02 4.30 16 9 S -0.15 -8.09 20.57 -56.49 -1.16 -9.25 16 10 C -0.13 -5.04 6.16 71.23 0.44 -4.60 16 11 C 0.54 18.69 7.85 87.66 0.69 19.38 16 12 O -0.56 -24.58 15.86 -3.06 -0.05 -24.62 16 13 N -0.71 -16.25 5.56 -463.05 -2.57 -18.82 16 14 C 0.12 2.13 5.79 86.38 0.50 2.63 16 15 C 0.12 1.83 5.79 86.38 0.50 2.33 16 16 N -0.71 -9.24 5.56 -463.05 -2.57 -11.81 16 17 C 0.52 9.11 6.98 87.66 0.61 9.72 16 18 O -0.58 -15.72 15.91 -3.06 -0.05 -15.77 16 19 C -0.13 -1.39 2.89 -9.88 -0.03 -1.42 16 20 H 0.14 0.67 8.03 -2.39 -0.02 0.66 16 21 C -0.13 -0.99 6.16 32.26 0.20 -0.80 16 22 C 0.08 0.85 5.66 32.54 0.18 1.04 16 23 H 0.14 1.24 8.14 -2.39 -0.02 1.22 16 24 O -0.40 -7.95 10.75 -148.98 -1.60 -9.55 16 25 C 0.10 1.57 4.61 33.74 0.16 1.72 16 26 H 0.12 2.19 7.78 -2.39 -0.02 2.17 16 27 C -0.19 -1.74 6.89 -7.94 -0.05 -1.80 16 28 H 0.15 0.73 8.14 -2.39 -0.02 0.71 16 29 C -0.15 -1.46 9.78 30.60 0.30 -1.16 16 30 C -0.19 -1.46 6.55 -9.13 -0.06 -1.52 16 31 H 0.15 0.48 8.14 -2.39 -0.02 0.46 16 32 H 0.27 15.37 8.31 -92.71 -0.77 14.60 16 33 H 0.11 3.80 8.14 -2.39 -0.02 3.78 16 34 H 0.11 3.81 8.14 -2.40 -0.02 3.79 16 35 H 0.42 6.98 8.47 -92.71 -0.79 6.20 16 36 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 37 H 0.07 1.40 8.14 -2.38 -0.02 1.38 16 38 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 39 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 40 H 0.42 3.03 8.47 -92.71 -0.79 2.24 16 41 H 0.12 0.24 8.03 -2.39 -0.02 0.22 16 42 H 0.07 0.73 7.76 -2.39 -0.02 0.71 16 43 H 0.08 1.14 7.61 -2.39 -0.02 1.12 16 44 H 0.12 0.73 8.14 -2.39 -0.02 0.71 16 Total: -1.00 -84.87 382.08 -1.68 -86.55 By element: Atomic # 1 Polarization: 17.25 SS G_CDS: -0.53 Total: 16.72 kcal Atomic # 6 Polarization: -8.13 SS G_CDS: 4.54 Total: -3.58 kcal Atomic # 7 Polarization: -80.92 SS G_CDS: -4.86 Total: -85.78 kcal Atomic # 8 Polarization: -48.24 SS G_CDS: -1.70 Total: -49.94 kcal Atomic # 14 Polarization: 43.26 SS G_CDS: 2.03 Total: 45.29 kcal Atomic # 16 Polarization: -8.09 SS G_CDS: -1.16 Total: -9.25 kcal Total: -84.87 -1.68 -86.55 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001574892018.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.783 kcal (2) G-P(sol) polarization free energy of solvation -84.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.655 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.680 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.552 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds