Wall clock time and date at job start Tue Mar 31 2020 23:39:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31635 * 1 3 3 Si 1.86793 * 120.00185 * 2 1 4 4 H 1.48506 * 109.47055 * 269.99587 * 3 2 1 5 5 H 1.48500 * 109.47398 * 29.99852 * 3 2 1 6 6 H 1.48504 * 109.47102 * 149.99976 * 3 2 1 7 7 C 1.38800 * 119.99722 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00237 * 180.02562 * 7 2 1 9 9 S 1.76208 * 120.00156 * 0.02562 * 7 2 1 10 10 C 1.80997 * 99.99962 * 180.02562 * 9 7 2 11 11 C 1.50697 * 109.47124 * 179.97438 * 10 9 7 12 12 O 1.21289 * 120.00100 * 0.02562 * 11 10 9 13 13 N 1.34774 * 120.00091 * 179.97438 * 11 10 9 14 14 C 1.46513 * 119.99951 * 180.02562 * 13 11 10 15 15 H 1.09001 * 112.84522 * 26.93427 * 14 13 11 16 16 C 1.53780 * 113.61192 * 158.13203 * 14 13 11 17 17 C 1.53774 * 87.08151 * 89.20131 * 16 14 13 18 18 H 1.08998 * 113.61891 * 140.06644 * 17 16 14 19 19 N 1.46506 * 113.61481 * 270.88126 * 17 16 14 20 20 C 1.34773 * 120.00054 * 274.80204 * 19 17 16 21 21 O 1.21283 * 120.00150 * 359.97438 * 20 19 17 22 22 C 1.50699 * 120.00041 * 179.97438 * 20 19 17 23 23 H 1.09000 * 115.50939 * 325.36766 * 22 20 19 24 24 C 1.55595 * 117.07089 * 111.45730 * 22 20 19 25 25 H 1.08999 * 120.00488 * 355.59987 * 24 22 20 26 26 C 1.54484 * 118.07891 * 197.73619 * 24 22 20 27 27 O 1.44425 * 104.80253 * 321.74821 * 26 24 22 28 28 C 1.44424 * 105.27326 * 319.48908 * 27 26 24 29 29 C 1.53002 * 117.43071 * 180.02562 * 22 20 19 30 30 H 1.09001 * 119.81074 * 5.70224 * 29 22 20 31 31 C 1.53780 * 87.08672 * 25.42995 * 17 16 14 32 32 H 0.96997 * 119.99549 * 0.02562 * 1 2 3 33 33 H 1.09001 * 109.47199 * 60.00318 * 10 9 7 34 34 H 1.08995 * 109.47326 * 299.99987 * 10 9 7 35 35 H 0.96997 * 120.00578 * 0.02562 * 13 11 10 36 36 H 1.08998 * 113.61372 * 334.64693 * 16 14 13 37 37 H 1.08996 * 113.68558 * 203.76015 * 16 14 13 38 38 H 0.97000 * 120.00008 * 94.80138 * 19 17 16 39 39 H 1.08996 * 110.37692 * 80.57908 * 26 24 22 40 40 H 1.09003 * 110.37382 * 202.91777 * 26 24 22 41 41 H 1.09006 * 110.37674 * 281.67901 * 28 27 26 42 42 H 1.09004 * 110.36990 * 159.34458 * 28 27 26 43 43 H 1.08997 * 113.61184 * 89.11166 * 31 17 16 44 44 H 1.09000 * 113.61821 * 220.02314 * 31 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6176 0.0000 4 1 2.4980 2.0463 -1.4001 5 1 1.4479 2.6527 0.7000 6 1 3.5479 1.4400 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2022 0.0010 9 16 1.1292 -2.7281 0.0005 10 6 2.5157 -3.8915 0.0021 11 6 1.9872 -5.3028 0.0030 12 8 0.7909 -5.5024 0.0021 13 7 2.8439 -6.3432 0.0037 14 6 2.3301 -7.7152 0.0040 15 1 1.3432 -7.7976 -0.4514 16 6 3.3389 -8.7509 -0.5201 17 6 3.8369 -8.8827 0.9288 18 1 4.0679 -9.9074 1.2197 19 7 4.9051 -7.9399 1.2703 20 6 6.1880 -8.2459 0.9930 21 8 6.4583 -9.3019 0.4611 22 6 7.2867 -7.2759 1.3437 23 1 7.0286 -6.2209 1.2516 24 6 8.2653 -7.6946 2.4786 25 1 8.0967 -8.6196 3.0300 26 6 9.1201 -6.5936 3.1446 27 8 9.4895 -5.7091 2.0642 28 6 9.7983 -6.5763 0.9513 29 6 8.7216 -7.6826 1.0020 30 1 8.9062 -8.5987 0.4408 31 6 2.4393 -8.4156 1.3687 32 1 -0.4849 0.8401 -0.0004 33 1 3.1236 -3.7311 0.8925 34 1 3.1250 -3.7319 -0.8874 35 1 3.8007 -6.1837 0.0040 36 1 4.0806 -8.3324 -1.2004 37 1 2.8744 -9.6581 -0.9063 38 1 4.6890 -7.0955 1.6959 39 1 8.5338 -6.0570 3.8906 40 1 10.0099 -7.0277 3.6006 41 1 10.7921 -7.0079 1.0708 42 1 9.7329 -6.0265 0.0124 43 1 1.7277 -9.2308 1.4992 44 1 2.4549 -7.7266 2.2131 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001578765928.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:39:37 Heat of formation + Delta-G solvation = -57.293967 kcal Electronic energy + Delta-G solvation = -26723.653345 eV Core-core repulsion = 22769.293315 eV Total energy + Delta-G solvation = -3954.360030 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.25485 -40.46996 -39.04651 -37.87414 -34.65686 -33.90777 -32.73211 -32.44920 -29.19727 -29.16794 -27.18110 -26.07171 -25.53758 -24.57137 -22.52462 -21.14744 -20.75501 -20.18493 -19.71913 -18.13688 -17.86020 -16.78730 -16.41299 -16.28037 -16.03107 -15.71930 -15.68485 -15.50659 -14.96756 -14.82288 -14.53417 -14.33625 -13.93575 -13.62285 -13.26356 -13.04615 -12.91001 -12.69383 -12.58617 -12.21146 -12.14413 -12.02270 -11.98026 -11.19938 -11.07703 -11.04683 -10.83410 -10.77954 -10.64586 -10.61373 -10.33521 -10.01824 -9.84261 -9.51957 -9.38370 -9.09355 -8.97310 -8.27520 -6.53309 -6.24079 -3.95079 1.97863 2.55483 2.95548 2.98692 3.10684 3.21260 3.26463 3.30174 3.48178 3.64298 4.04928 4.11361 4.14159 4.18177 4.24148 4.34510 4.39317 4.59209 4.71007 4.85880 4.89363 4.94138 5.07379 5.11381 5.14136 5.24241 5.29747 5.38978 5.39570 5.40601 5.51813 5.54451 5.57068 5.68058 5.71148 5.81725 5.86691 6.07703 6.16432 6.26379 6.61152 7.08996 7.57210 7.60649 7.83035 8.32861 8.52445 9.21462 10.83332 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.009146 B = 0.002887 C = 0.002267 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3060.741880 B = 9696.942163 C =12348.273850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.074 3.926 3 Si 0.919 3.081 4 H -0.277 1.277 5 H -0.282 1.282 6 H -0.272 1.272 7 C -0.536 4.536 8 H 0.073 0.927 9 S -0.058 6.058 10 C -0.155 4.155 11 C 0.534 3.466 12 O -0.512 6.512 13 N -0.723 5.723 14 C 0.123 3.877 15 H 0.105 0.895 16 C -0.155 4.155 17 C 0.121 3.879 18 H 0.094 0.906 19 N -0.710 5.710 20 C 0.549 3.451 21 O -0.535 6.535 22 C -0.151 4.151 23 H 0.131 0.869 24 C -0.173 4.173 25 H 0.130 0.870 26 C 0.071 3.929 27 O -0.371 6.371 28 C 0.069 3.931 29 C -0.161 4.161 30 H 0.135 0.865 31 C -0.155 4.155 32 H 0.269 0.731 33 H 0.089 0.911 34 H 0.090 0.910 35 H 0.395 0.605 36 H 0.077 0.923 37 H 0.104 0.896 38 H 0.405 0.595 39 H 0.100 0.900 40 H 0.075 0.925 41 H 0.075 0.925 42 H 0.100 0.900 43 H 0.106 0.894 44 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.477 -19.212 4.830 26.417 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.135 4.135 3 Si 0.745 3.255 4 H -0.202 1.202 5 H -0.207 1.207 6 H -0.197 1.197 7 C -0.685 4.685 8 H 0.091 0.909 9 S 0.169 5.831 10 C -0.305 4.305 11 C 0.320 3.680 12 O -0.386 6.386 13 N -0.378 5.378 14 C 0.017 3.983 15 H 0.123 0.877 16 C -0.194 4.194 17 C 0.016 3.984 18 H 0.112 0.888 19 N -0.362 5.362 20 C 0.336 3.664 21 O -0.411 6.411 22 C -0.172 4.172 23 H 0.148 0.852 24 C -0.192 4.192 25 H 0.148 0.852 26 C -0.006 4.006 27 O -0.289 6.289 28 C -0.008 4.008 29 C -0.180 4.180 30 H 0.153 0.847 31 C -0.195 4.195 32 H 0.078 0.922 33 H 0.108 0.892 34 H 0.108 0.892 35 H 0.230 0.770 36 H 0.095 0.905 37 H 0.122 0.878 38 H 0.240 0.760 39 H 0.118 0.882 40 H 0.093 0.907 41 H 0.093 0.907 42 H 0.118 0.882 43 H 0.125 0.875 44 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 15.503 -19.951 4.452 25.656 hybrid contribution 2.251 1.481 0.170 2.700 sum 17.754 -18.470 4.623 26.033 Atomic orbital electron populations 1.70017 1.05962 1.27498 1.46803 1.24991 0.95027 0.99046 0.94478 0.86168 0.79427 0.81529 0.78390 1.20248 1.20736 1.19651 1.22868 0.94913 0.91622 1.59057 0.90902 1.85409 1.04714 0.96305 1.96721 1.23545 1.06738 0.95319 1.04941 1.20367 0.86569 0.86218 0.74836 1.90709 1.15290 1.85497 1.47059 1.45835 1.09636 1.04717 1.77596 1.21820 0.99054 0.81346 0.96088 0.87681 1.23726 0.98918 0.99845 0.96899 1.21928 0.86660 0.93633 0.96138 0.88781 1.45771 1.05555 1.22378 1.62496 1.19471 0.82745 0.86400 0.77824 1.90710 1.83159 1.24944 1.42283 1.22517 0.90189 1.00460 1.04080 0.85157 1.24474 1.01009 1.01974 0.91700 0.85192 1.22991 0.96926 0.90126 0.90520 1.89221 1.88246 1.29374 1.22077 1.23024 0.96090 0.90447 0.91206 1.24037 0.92630 1.02277 0.99028 0.84682 1.23764 0.95255 1.01387 0.99052 0.92156 0.89221 0.89193 0.77046 0.90478 0.87763 0.75965 0.88202 0.90688 0.90684 0.88212 0.87527 0.90142 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.92 13.22 55.49 0.73 -25.19 16 2 C 0.07 2.09 5.49 -17.43 -0.10 1.99 16 3 Si 0.92 21.20 29.55 -169.99 -5.02 16.18 16 4 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 5 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 6 H -0.27 -6.09 7.11 56.52 0.40 -5.68 16 7 C -0.54 -15.06 9.50 30.94 0.29 -14.77 16 8 H 0.07 1.94 7.80 -52.48 -0.41 1.53 16 9 S -0.06 -1.54 20.57 -107.50 -2.21 -3.75 16 10 C -0.15 -3.00 6.16 36.00 0.22 -2.78 16 11 C 0.53 9.44 7.85 -10.99 -0.09 9.35 16 12 O -0.51 -11.13 15.50 5.55 0.09 -11.04 16 13 N -0.72 -8.99 4.96 -53.01 -0.26 -9.25 16 14 C 0.12 1.33 4.28 -67.11 -0.29 1.04 16 15 H 0.11 1.32 7.54 -51.93 -0.39 0.93 16 16 C -0.15 -1.38 7.61 -25.92 -0.20 -1.57 16 17 C 0.12 1.03 4.00 -67.12 -0.27 0.76 16 18 H 0.09 0.82 8.04 -51.93 -0.42 0.40 16 19 N -0.71 -5.86 4.34 -53.02 -0.23 -6.09 16 20 C 0.55 5.34 7.61 -10.99 -0.08 5.26 16 21 O -0.53 -6.94 16.28 5.55 0.09 -6.85 16 22 C -0.15 -1.22 5.68 -90.39 -0.51 -1.74 16 23 H 0.13 1.00 8.09 -51.93 -0.42 0.58 16 24 C -0.17 -1.20 7.07 -87.64 -0.62 -1.81 16 25 H 0.13 0.83 8.14 -51.93 -0.42 0.41 16 26 C 0.07 0.46 7.54 37.94 0.29 0.75 16 27 O -0.37 -3.34 11.34 -35.23 -0.40 -3.74 16 28 C 0.07 0.48 7.53 37.92 0.29 0.76 16 29 C -0.16 -1.22 6.60 -89.03 -0.59 -1.81 16 30 H 0.14 1.09 7.82 -51.93 -0.41 0.68 16 31 C -0.16 -1.33 7.58 -25.92 -0.20 -1.53 16 32 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 33 H 0.09 1.57 8.14 -51.92 -0.42 1.15 16 34 H 0.09 1.63 8.14 -51.92 -0.42 1.21 16 35 H 0.39 4.04 7.20 -40.82 -0.29 3.74 16 36 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 37 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.40 2.90 7.83 -40.82 -0.32 2.58 16 39 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.08 0.38 8.14 -51.93 -0.42 -0.05 16 41 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 42 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 43 H 0.11 0.75 8.14 -51.93 -0.42 0.33 16 44 H 0.08 0.75 8.13 -51.93 -0.42 0.33 16 LS Contribution 383.77 15.07 5.78 5.78 Total: -1.00 -35.88 383.77 -9.72 -45.61 By element: Atomic # 1 Polarization: 10.87 SS G_CDS: -6.44 Total: 4.43 kcal Atomic # 6 Polarization: -4.25 SS G_CDS: -1.85 Total: -6.09 kcal Atomic # 7 Polarization: -40.77 SS G_CDS: 0.24 Total: -40.52 kcal Atomic # 8 Polarization: -21.40 SS G_CDS: -0.22 Total: -21.62 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Atomic # 16 Polarization: -1.54 SS G_CDS: -2.21 Total: -3.75 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -35.88 -9.72 -45.61 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001578765928.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.689 kcal (2) G-P(sol) polarization free energy of solvation -35.880 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.569 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.725 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.605 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.294 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds