Wall clock time and date at job start Tue Mar 31 2020 23:39:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31635 * 1 3 3 Si 1.86793 * 120.00185 * 2 1 4 4 H 1.48506 * 109.47055 * 269.99587 * 3 2 1 5 5 H 1.48500 * 109.47398 * 29.99852 * 3 2 1 6 6 H 1.48504 * 109.47102 * 149.99976 * 3 2 1 7 7 C 1.38800 * 119.99722 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00237 * 180.02562 * 7 2 1 9 9 S 1.76208 * 120.00156 * 0.02562 * 7 2 1 10 10 C 1.80997 * 99.99962 * 180.02562 * 9 7 2 11 11 C 1.50697 * 109.47124 * 179.97438 * 10 9 7 12 12 O 1.21289 * 120.00100 * 0.02562 * 11 10 9 13 13 N 1.34774 * 120.00091 * 179.97438 * 11 10 9 14 14 C 1.46513 * 119.99951 * 180.02562 * 13 11 10 15 15 H 1.09001 * 112.84522 * 26.93427 * 14 13 11 16 16 C 1.53780 * 113.61192 * 158.13203 * 14 13 11 17 17 C 1.53774 * 87.08151 * 89.20131 * 16 14 13 18 18 H 1.08998 * 113.61891 * 140.06644 * 17 16 14 19 19 N 1.46506 * 113.61481 * 270.88126 * 17 16 14 20 20 C 1.34773 * 120.00054 * 274.80204 * 19 17 16 21 21 O 1.21283 * 120.00150 * 359.97438 * 20 19 17 22 22 C 1.50699 * 120.00041 * 179.97438 * 20 19 17 23 23 H 1.09000 * 115.50939 * 325.36766 * 22 20 19 24 24 C 1.55595 * 117.07089 * 111.45730 * 22 20 19 25 25 H 1.08999 * 120.00488 * 355.59987 * 24 22 20 26 26 C 1.54484 * 118.07891 * 197.73619 * 24 22 20 27 27 O 1.44425 * 104.80253 * 321.74821 * 26 24 22 28 28 C 1.44424 * 105.27326 * 319.48908 * 27 26 24 29 29 C 1.53002 * 117.43071 * 180.02562 * 22 20 19 30 30 H 1.09001 * 119.81074 * 5.70224 * 29 22 20 31 31 C 1.53780 * 87.08672 * 25.42995 * 17 16 14 32 32 H 0.96997 * 119.99549 * 0.02562 * 1 2 3 33 33 H 1.09001 * 109.47199 * 60.00318 * 10 9 7 34 34 H 1.08995 * 109.47326 * 299.99987 * 10 9 7 35 35 H 0.96997 * 120.00578 * 0.02562 * 13 11 10 36 36 H 1.08998 * 113.61372 * 334.64693 * 16 14 13 37 37 H 1.08996 * 113.68558 * 203.76015 * 16 14 13 38 38 H 0.97000 * 120.00008 * 94.80138 * 19 17 16 39 39 H 1.08996 * 110.37692 * 80.57908 * 26 24 22 40 40 H 1.09003 * 110.37382 * 202.91777 * 26 24 22 41 41 H 1.09006 * 110.37674 * 281.67901 * 28 27 26 42 42 H 1.09004 * 110.36990 * 159.34458 * 28 27 26 43 43 H 1.08997 * 113.61184 * 89.11166 * 31 17 16 44 44 H 1.09000 * 113.61821 * 220.02314 * 31 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6176 0.0000 4 1 2.4980 2.0463 -1.4001 5 1 1.4479 2.6527 0.7000 6 1 3.5479 1.4400 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2022 0.0010 9 16 1.1292 -2.7281 0.0005 10 6 2.5157 -3.8915 0.0021 11 6 1.9872 -5.3028 0.0030 12 8 0.7909 -5.5024 0.0021 13 7 2.8439 -6.3432 0.0037 14 6 2.3301 -7.7152 0.0040 15 1 1.3432 -7.7976 -0.4514 16 6 3.3389 -8.7509 -0.5201 17 6 3.8369 -8.8827 0.9288 18 1 4.0679 -9.9074 1.2197 19 7 4.9051 -7.9399 1.2703 20 6 6.1880 -8.2459 0.9930 21 8 6.4583 -9.3019 0.4611 22 6 7.2867 -7.2759 1.3437 23 1 7.0286 -6.2209 1.2516 24 6 8.2653 -7.6946 2.4786 25 1 8.0967 -8.6196 3.0300 26 6 9.1201 -6.5936 3.1446 27 8 9.4895 -5.7091 2.0642 28 6 9.7983 -6.5763 0.9513 29 6 8.7216 -7.6826 1.0020 30 1 8.9062 -8.5987 0.4408 31 6 2.4393 -8.4156 1.3687 32 1 -0.4849 0.8401 -0.0004 33 1 3.1236 -3.7311 0.8925 34 1 3.1250 -3.7319 -0.8874 35 1 3.8007 -6.1837 0.0040 36 1 4.0806 -8.3324 -1.2004 37 1 2.8744 -9.6581 -0.9063 38 1 4.6890 -7.0955 1.6959 39 1 8.5338 -6.0570 3.8906 40 1 10.0099 -7.0277 3.6006 41 1 10.7921 -7.0079 1.0708 42 1 9.7329 -6.0265 0.0124 43 1 1.7277 -9.2308 1.4992 44 1 2.4549 -7.7266 2.2131 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001578765928.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:39:36 Heat of formation + Delta-G solvation = -83.269403 kcal Electronic energy + Delta-G solvation = -26724.779724 eV Core-core repulsion = 22769.293315 eV Total energy + Delta-G solvation = -3955.486409 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.98531 -41.28086 -40.09296 -38.90345 -35.28158 -34.89975 -34.57729 -33.78383 -30.67307 -29.67400 -27.86291 -27.64415 -26.80842 -25.39478 -23.29044 -21.93679 -21.64647 -21.02208 -20.56730 -19.79909 -18.79363 -18.00310 -17.23841 -17.10513 -16.95096 -16.87195 -16.61001 -16.41636 -16.30301 -16.06294 -15.84223 -15.38029 -14.99776 -14.69169 -14.45365 -14.27677 -13.96521 -13.53111 -13.36715 -13.30198 -13.15991 -12.99123 -12.88999 -12.77349 -12.60329 -12.56173 -12.07933 -11.74316 -11.49929 -11.32471 -11.23771 -11.13919 -11.04318 -10.97641 -10.60475 -10.27831 -10.25047 -10.03274 -8.66009 -8.34472 -6.12179 1.25192 1.28077 1.42861 1.46885 1.56545 1.57275 1.88771 2.23334 2.28299 2.50105 2.94687 3.00004 3.31122 3.36520 3.48869 3.50016 3.59922 3.67694 3.80041 3.86070 3.95583 4.08828 4.09714 4.29141 4.32475 4.49421 4.49657 4.65438 4.67587 4.73919 4.76776 4.78003 4.81700 4.83854 4.86336 4.96380 4.98112 4.99670 5.34069 5.42598 5.62423 5.75040 6.20252 6.37896 6.44040 7.07306 7.10353 7.19772 8.74648 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.009146 B = 0.002887 C = 0.002267 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3060.741880 B = 9696.942163 C =12348.273850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.014 3.986 3 Si 0.997 3.003 4 H -0.269 1.269 5 H -0.278 1.278 6 H -0.257 1.257 7 C -0.547 4.547 8 H 0.083 0.917 9 S -0.147 6.147 10 C -0.132 4.132 11 C 0.538 3.462 12 O -0.559 6.559 13 N -0.698 5.698 14 C 0.108 3.892 15 H 0.088 0.912 16 C -0.143 4.143 17 C 0.125 3.875 18 H 0.098 0.902 19 N -0.703 5.703 20 C 0.552 3.448 21 O -0.569 6.569 22 C -0.160 4.160 23 H 0.135 0.865 24 C -0.161 4.161 25 H 0.136 0.864 26 C 0.069 3.931 27 O -0.395 6.395 28 C 0.069 3.931 29 C -0.165 4.165 30 H 0.128 0.872 31 C -0.142 4.142 32 H 0.271 0.729 33 H 0.113 0.887 34 H 0.106 0.894 35 H 0.409 0.591 36 H 0.067 0.933 37 H 0.123 0.877 38 H 0.411 0.589 39 H 0.107 0.893 40 H 0.092 0.908 41 H 0.092 0.908 42 H 0.102 0.898 43 H 0.127 0.873 44 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.883 -19.612 5.524 28.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.190 4.190 3 Si 0.818 3.182 4 H -0.194 1.194 5 H -0.203 1.203 6 H -0.181 1.181 7 C -0.694 4.694 8 H 0.101 0.899 9 S 0.080 5.920 10 C -0.283 4.283 11 C 0.324 3.676 12 O -0.436 6.436 13 N -0.352 5.352 14 C 0.003 3.997 15 H 0.106 0.894 16 C -0.182 4.182 17 C 0.020 3.980 18 H 0.116 0.884 19 N -0.355 5.355 20 C 0.339 3.661 21 O -0.448 6.448 22 C -0.181 4.181 23 H 0.152 0.848 24 C -0.180 4.180 25 H 0.154 0.846 26 C -0.007 4.007 27 O -0.314 6.314 28 C -0.007 4.007 29 C -0.184 4.184 30 H 0.146 0.854 31 C -0.181 4.181 32 H 0.080 0.920 33 H 0.131 0.869 34 H 0.125 0.875 35 H 0.246 0.754 36 H 0.086 0.914 37 H 0.141 0.859 38 H 0.248 0.752 39 H 0.125 0.875 40 H 0.110 0.890 41 H 0.109 0.891 42 H 0.120 0.880 43 H 0.145 0.855 44 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 17.949 -20.377 5.158 27.640 hybrid contribution 1.544 1.460 -0.051 2.126 sum 19.493 -18.916 5.108 27.639 Atomic orbital electron populations 1.70179 1.07948 1.28597 1.48039 1.26100 0.95935 1.03255 0.93751 0.84979 0.78272 0.76146 0.78760 1.19430 1.20318 1.18130 1.23211 0.95359 0.92051 1.58817 0.89912 1.85570 1.10288 0.99084 1.97043 1.23391 1.03725 0.94399 1.06822 1.20054 0.86247 0.86501 0.74768 1.90701 1.17230 1.85958 1.49707 1.45551 1.09693 1.04504 1.75447 1.22053 0.98867 0.80501 0.98307 0.89430 1.23721 0.97872 0.99606 0.97015 1.21918 0.86515 0.93885 0.95697 0.88377 1.45750 1.05250 1.22544 1.61950 1.19703 0.83259 0.86066 0.77066 1.90695 1.83673 1.26472 1.44000 1.22501 0.90033 1.00134 1.05429 0.84760 1.24535 0.99843 1.02232 0.91364 0.84599 1.23156 0.97628 0.89813 0.90087 1.89193 1.88481 1.30672 1.23075 1.23124 0.96574 0.90080 0.90924 1.24036 0.92459 1.02278 0.99620 0.85365 1.23728 0.95734 1.01418 0.97182 0.92004 0.86879 0.87534 0.75431 0.91405 0.85860 0.75210 0.87483 0.88954 0.89050 0.88006 0.85516 0.90546 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -55.47 13.22 21.65 0.29 -55.19 16 2 C 0.01 0.81 5.49 84.86 0.47 1.28 16 3 Si 1.00 43.13 29.55 68.60 2.03 45.16 16 4 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 5 H -0.28 -11.74 7.11 99.48 0.71 -11.03 16 6 H -0.26 -10.43 7.11 99.48 0.71 -9.72 16 7 C -0.55 -30.73 9.50 67.95 0.65 -30.08 16 8 H 0.08 4.31 7.80 -2.91 -0.02 4.29 16 9 S -0.15 -7.98 20.57 -56.49 -1.16 -9.15 16 10 C -0.13 -5.01 6.16 71.23 0.44 -4.58 16 11 C 0.54 18.76 7.85 87.66 0.69 19.45 16 12 O -0.56 -24.70 15.50 -3.06 -0.05 -24.75 16 13 N -0.70 -16.37 4.96 -440.00 -2.18 -18.55 16 14 C 0.11 2.19 4.28 45.52 0.19 2.39 16 15 H 0.09 2.16 7.54 -2.39 -0.02 2.14 16 16 C -0.14 -2.27 7.61 31.12 0.24 -2.03 16 17 C 0.12 1.84 4.00 45.51 0.18 2.02 16 18 H 0.10 1.47 8.04 -2.39 -0.02 1.46 16 19 N -0.70 -10.24 4.34 -440.04 -1.91 -12.15 16 20 C 0.55 9.92 7.61 87.66 0.67 10.58 16 21 O -0.57 -14.15 16.28 -3.04 -0.05 -14.19 16 22 C -0.16 -2.34 5.68 -10.64 -0.06 -2.40 16 23 H 0.13 1.84 8.09 -2.39 -0.02 1.82 16 24 C -0.16 -1.93 7.07 -8.86 -0.06 -2.00 16 25 H 0.14 1.47 8.14 -2.39 -0.02 1.46 16 26 C 0.07 0.76 7.54 72.49 0.55 1.30 16 27 O -0.40 -6.43 11.34 -148.98 -1.69 -8.11 16 28 C 0.07 0.85 7.53 72.48 0.55 1.40 16 29 C -0.17 -2.29 6.60 -9.77 -0.06 -2.35 16 30 H 0.13 1.97 7.82 -2.39 -0.02 1.95 16 31 C -0.14 -2.14 7.58 31.12 0.24 -1.90 16 32 H 0.27 15.32 8.31 -92.71 -0.77 14.55 16 33 H 0.11 3.76 8.14 -2.39 -0.02 3.74 16 34 H 0.11 3.70 8.14 -2.40 -0.02 3.68 16 35 H 0.41 7.48 7.20 -92.71 -0.67 6.82 16 36 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 37 H 0.12 1.53 8.14 -2.39 -0.02 1.51 16 38 H 0.41 4.98 7.83 -92.71 -0.73 4.26 16 39 H 0.11 0.99 8.14 -2.39 -0.02 0.98 16 40 H 0.09 0.69 8.14 -2.39 -0.02 0.67 16 41 H 0.09 0.80 8.14 -2.38 -0.02 0.78 16 42 H 0.10 1.16 8.14 -2.38 -0.02 1.14 16 43 H 0.13 1.46 8.14 -2.39 -0.02 1.44 16 44 H 0.08 1.27 8.13 -2.39 -0.02 1.25 16 Total: -1.00 -79.55 383.77 -0.42 -79.98 By element: Atomic # 1 Polarization: 24.24 SS G_CDS: -0.35 Total: 23.88 kcal Atomic # 6 Polarization: -11.59 SS G_CDS: 4.66 Total: -6.93 kcal Atomic # 7 Polarization: -82.08 SS G_CDS: -3.81 Total: -85.89 kcal Atomic # 8 Polarization: -45.27 SS G_CDS: -1.79 Total: -47.06 kcal Atomic # 14 Polarization: 43.13 SS G_CDS: 2.03 Total: 45.16 kcal Atomic # 16 Polarization: -7.98 SS G_CDS: -1.16 Total: -9.15 kcal Total: -79.55 -0.42 -79.98 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001578765928.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.292 kcal (2) G-P(sol) polarization free energy of solvation -79.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.845 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.424 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.977 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds