Wall clock time and date at job start Tue Mar 31 2020 23:15:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30825 * 1 3 3 Si 1.86801 * 119.99845 * 2 1 4 4 H 1.48499 * 109.47020 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47118 * 300.00336 * 3 2 1 6 6 H 1.48505 * 109.46900 * 60.00694 * 3 2 1 7 7 C 1.39943 * 119.99997 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00144 * 162.32194 * 7 2 1 9 9 C 1.41396 * 119.99802 * 342.31188 * 7 2 1 10 10 C 1.40731 * 120.24938 * 335.20457 * 9 7 2 11 11 C 1.37593 * 119.74953 * 180.02562 * 10 9 7 12 12 C 1.38654 * 120.24826 * 359.97438 * 11 10 9 13 13 C 1.38614 * 120.50198 * 359.97438 * 12 11 10 14 14 S 1.76206 * 119.87826 * 180.02562 * 13 12 11 15 15 O 1.42103 * 106.39904 * 336.46293 * 14 13 12 16 16 O 1.42093 * 106.40233 * 203.54238 * 14 13 12 17 17 N 1.65597 * 107.21676 * 90.00042 * 14 13 12 18 18 C 1.47513 * 118.75669 * 90.00024 * 17 14 13 19 19 C 1.53572 * 111.02596 * 138.37176 * 18 17 14 20 20 C 1.51537 * 109.58297 * 320.02565 * 19 18 17 21 21 O 1.42153 * 108.76559 * 91.39737 * 20 19 18 22 22 C 1.38012 * 119.43658 * 272.78152 * 21 20 19 23 23 H 1.08994 * 109.46788 * 303.41993 * 22 21 20 24 24 C 1.53002 * 109.46699 * 183.42646 * 22 21 20 25 25 N 1.46904 * 109.46961 * 65.00297 * 24 22 21 26 26 C 1.45117 * 118.76006 * 270.00125 * 17 14 13 27 27 C 1.37638 * 120.24846 * 0.29929 * 13 12 11 28 28 H 0.97005 * 120.00126 * 359.97438 * 1 2 3 29 29 H 1.08007 * 120.12422 * 0.03583 * 10 9 7 30 30 H 1.08003 * 119.87726 * 180.02562 * 11 10 9 31 31 H 1.08005 * 119.75463 * 179.97438 * 12 11 10 32 32 H 1.09001 * 109.16603 * 17.97204 * 18 17 14 33 33 H 1.09004 * 109.12407 * 258.74212 * 18 17 14 34 34 H 1.09004 * 109.45325 * 199.98613 * 19 18 17 35 35 H 1.09005 * 109.45020 * 80.05779 * 19 18 17 36 36 H 1.09000 * 109.58747 * 331.61036 * 20 19 18 37 37 H 1.08997 * 109.58556 * 211.18228 * 20 19 18 38 38 H 1.08992 * 109.47287 * 304.99450 * 24 22 21 39 39 H 1.09007 * 109.47034 * 184.99405 * 24 22 21 40 40 H 1.00904 * 110.99468 * 180.02562 * 25 24 22 41 41 H 1.00900 * 110.99732 * 303.94856 * 25 24 22 42 42 H 1.09001 * 109.46313 * 149.26657 * 26 17 14 43 43 H 1.09005 * 109.46241 * 29.30938 * 26 17 14 44 44 H 1.07999 * 120.13098 * 179.70719 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 3.7022 1.3464 -0.0006 5 1 1.8834 2.3965 -1.2124 6 1 1.8835 2.3964 1.2126 7 6 2.0080 -1.2119 -0.0005 8 1 3.0497 -1.2339 -0.2846 9 6 1.3511 -2.4077 0.3710 10 6 0.2227 -2.3651 1.2109 11 6 -0.4083 -3.5350 1.5664 12 6 0.0633 -4.7526 1.0999 13 6 1.1732 -4.8064 0.2713 14 16 1.7580 -6.3627 -0.3126 15 8 1.2988 -7.3372 0.6141 16 8 3.1303 -6.1810 -0.6333 17 7 0.9810 -6.6736 -1.7415 18 6 1.5956 -6.2086 -2.9993 19 6 1.4760 -7.2748 -4.0981 20 6 1.7188 -8.6470 -3.5029 21 8 0.4726 -9.1948 -3.0933 22 6 -0.0103 -8.9128 -1.8315 23 1 0.7255 -9.2130 -1.0855 24 6 -1.3132 -9.6811 -1.6007 25 7 -1.0368 -11.1239 -1.5976 26 6 -0.2788 -7.3932 -1.7091 27 6 1.8235 -3.6493 -0.0927 28 1 -0.4850 0.8401 0.0004 29 1 -0.1466 -1.4177 1.5750 30 1 -1.2746 -3.5048 2.2106 31 1 -0.4379 -5.6661 1.3843 32 1 2.6493 -5.9919 -2.8240 33 1 1.0929 -5.2987 -3.3274 34 1 2.2155 -7.0800 -4.8750 35 1 0.4765 -7.2387 -4.5316 36 1 2.3805 -8.5597 -2.6412 37 1 2.1742 -9.2948 -4.2518 38 1 -2.0186 -9.4479 -2.3981 39 1 -1.7408 -9.3911 -0.6409 40 1 -1.8824 -11.6536 -1.4473 41 1 -0.5806 -11.4065 -2.4521 42 1 -0.9049 -7.0670 -2.5396 43 1 -0.7894 -7.1893 -0.7678 44 1 2.6909 -3.6938 -0.7346 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001580055293.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:15:04 Heat of formation + Delta-G solvation = -97.151965 kcal Electronic energy + Delta-G solvation = -28600.572742 eV Core-core repulsion = 24644.484340 eV Total energy + Delta-G solvation = -3956.088402 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -39.78857 -37.67344 -36.84430 -35.77680 -35.34712 -34.82327 -33.88110 -32.29946 -30.11519 -29.83436 -28.58136 -26.62919 -25.51879 -23.95032 -21.94630 -21.44429 -21.11135 -20.97279 -18.75431 -17.99848 -17.32196 -16.89030 -16.50393 -16.20807 -15.94122 -15.26545 -15.16273 -14.81016 -14.75326 -14.32096 -14.26878 -13.71382 -13.49626 -13.41257 -12.97980 -12.65009 -12.60416 -12.42536 -12.06043 -11.95101 -11.80967 -11.66520 -11.56351 -11.44880 -11.40931 -11.18354 -11.02793 -10.94867 -10.75446 -10.62756 -10.55278 -9.81482 -9.72728 -9.54978 -9.39426 -8.82223 -8.74786 -8.06947 -7.74152 -6.96485 -4.57361 0.91474 2.15127 2.59031 2.97855 3.01393 3.04604 3.35394 3.58606 3.80107 4.16597 4.33180 4.41288 4.71770 4.73739 4.89090 4.98511 5.03665 5.17516 5.19680 5.25316 5.37191 5.43717 5.55467 5.59409 5.66037 5.86414 5.90568 5.97942 5.99243 6.06576 6.13196 6.17893 6.60400 6.66055 6.73062 6.89151 6.99262 7.01314 7.18057 7.33453 7.34224 7.56495 7.68771 7.77278 7.90447 8.36672 8.63309 8.68077 9.99094 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.019302 B = 0.003311 C = 0.003133 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1450.294735 B = 8454.199698 C = 8935.797987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.794 5.794 2 C 0.075 3.925 3 Si 0.911 3.089 4 H -0.258 1.258 5 H -0.273 1.273 6 H -0.271 1.271 7 C -0.460 4.460 8 H 0.083 0.917 9 C 0.092 3.908 10 C -0.118 4.118 11 C -0.120 4.120 12 C -0.149 4.149 13 C -0.631 4.631 14 S 2.678 3.322 15 O -0.968 6.968 16 O -0.970 6.970 17 N -0.996 5.996 18 C 0.109 3.891 19 C -0.158 4.158 20 C 0.078 3.922 21 O -0.389 6.389 22 C 0.084 3.916 23 H 0.068 0.932 24 C 0.075 3.925 25 N -0.848 5.848 26 C 0.093 3.907 27 C -0.126 4.126 28 H 0.283 0.717 29 H 0.125 0.875 30 H 0.099 0.901 31 H 0.105 0.895 32 H 0.097 0.903 33 H 0.071 0.929 34 H 0.085 0.915 35 H 0.079 0.921 36 H 0.052 0.948 37 H 0.090 0.910 38 H 0.035 0.965 39 H 0.089 0.911 40 H 0.340 0.660 41 H 0.347 0.653 42 H 0.086 0.914 43 H 0.089 0.911 44 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.778 -11.857 -7.282 14.189 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.419 5.419 2 C -0.143 4.143 3 Si 0.735 3.265 4 H -0.182 1.182 5 H -0.198 1.198 6 H -0.196 1.196 7 C -0.489 4.489 8 H 0.102 0.898 9 C 0.089 3.911 10 C -0.137 4.137 11 C -0.140 4.140 12 C -0.170 4.170 13 C -0.723 4.723 14 S 2.776 3.224 15 O -0.958 6.958 16 O -0.961 6.961 17 N -0.832 5.832 18 C -0.015 4.015 19 C -0.198 4.198 20 C 0.002 3.998 21 O -0.308 6.308 22 C 0.023 3.977 23 H 0.086 0.914 24 C -0.056 4.056 25 N -0.378 5.378 26 C -0.034 4.034 27 C -0.148 4.148 28 H 0.094 0.906 29 H 0.143 0.857 30 H 0.117 0.883 31 H 0.123 0.877 32 H 0.115 0.885 33 H 0.090 0.910 34 H 0.104 0.896 35 H 0.097 0.903 36 H 0.070 0.930 37 H 0.108 0.892 38 H 0.054 0.946 39 H 0.107 0.893 40 H 0.152 0.848 41 H 0.160 0.840 42 H 0.104 0.896 43 H 0.108 0.892 44 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -1.998 -12.199 -6.426 13.932 hybrid contribution -0.711 1.848 -0.675 2.092 sum -2.709 -10.351 -7.101 12.842 Atomic orbital electron populations 1.69787 1.07667 1.29557 1.34898 1.25939 0.94784 1.01574 0.92007 0.86207 0.81091 0.80510 0.78693 1.18183 1.19847 1.19566 1.19651 0.98326 0.90926 1.40026 0.89849 1.17688 0.91753 0.91986 0.89680 1.21638 0.97647 0.97135 0.97331 1.20811 0.99397 0.93130 1.00638 1.20072 0.97203 0.97301 1.02406 1.29774 1.09784 1.18121 1.14614 1.02086 0.73320 0.74788 0.72223 1.93524 1.82119 1.59214 1.60989 1.93504 1.31485 1.87360 1.83730 1.57370 1.34178 1.69734 1.21922 1.21757 0.99380 0.96943 0.83460 1.22400 1.03701 0.95427 0.98243 1.22142 0.85098 0.93766 0.98827 1.86123 1.38062 1.73536 1.33045 1.22190 0.96456 0.93410 0.85605 0.91405 1.21719 0.94413 0.88269 1.01232 1.58651 1.30713 1.04176 1.44249 1.22039 0.85678 0.91570 1.04099 1.20762 1.00423 0.91661 1.01944 0.90611 0.85745 0.88330 0.87658 0.88493 0.91037 0.89645 0.90279 0.92980 0.89198 0.94630 0.89257 0.84783 0.84045 0.89611 0.89242 0.87137 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.39 10.97 55.55 0.61 -18.78 16 2 C 0.08 1.79 5.14 -17.34 -0.09 1.70 16 3 Si 0.91 17.85 29.59 -169.99 -5.03 12.82 16 4 H -0.26 -5.05 7.11 56.52 0.40 -4.65 16 5 H -0.27 -5.26 7.11 56.52 0.40 -4.86 16 6 H -0.27 -5.22 7.11 56.52 0.40 -4.82 16 7 C -0.46 -11.69 9.05 -37.74 -0.34 -12.03 16 8 H 0.08 2.05 7.91 -52.49 -0.41 1.63 16 9 C 0.09 2.37 5.57 -106.82 -0.60 1.78 16 10 C -0.12 -2.92 8.70 -38.88 -0.34 -3.25 16 11 C -0.12 -2.69 10.02 -39.66 -0.40 -3.09 16 12 C -0.15 -3.23 9.53 -39.29 -0.37 -3.60 16 13 C -0.63 -13.85 5.97 -39.66 -0.24 -14.09 16 14 S 2.68 51.13 5.57 -107.50 -0.60 50.53 16 15 O -0.97 -19.65 15.65 -57.17 -0.89 -20.55 16 16 O -0.97 -20.26 15.65 -57.17 -0.89 -21.16 16 17 N -1.00 -15.19 2.49 -113.24 -0.28 -15.47 16 18 C 0.11 1.45 6.30 -3.19 -0.02 1.43 16 19 C -0.16 -1.65 5.78 -27.17 -0.16 -1.81 16 20 C 0.08 0.88 6.37 36.42 0.23 1.11 16 21 O -0.39 -4.76 8.98 -26.52 -0.24 -5.00 16 22 C 0.08 1.09 2.85 -25.78 -0.07 1.02 16 23 H 0.07 1.05 7.62 -51.93 -0.40 0.65 16 24 C 0.08 0.81 6.49 -3.82 -0.02 0.78 16 25 N -0.85 -8.54 9.62 -10.37 -0.10 -8.64 16 26 C 0.09 1.25 4.71 -3.83 -0.02 1.24 16 27 C -0.13 -3.03 9.26 -38.87 -0.36 -3.39 16 28 H 0.28 6.25 8.30 -40.82 -0.34 5.91 16 29 H 0.12 3.13 6.18 -52.48 -0.32 2.80 16 30 H 0.10 1.92 8.06 -52.48 -0.42 1.49 16 31 H 0.11 2.05 7.60 -52.48 -0.40 1.65 16 32 H 0.10 1.34 6.69 -51.93 -0.35 1.00 16 33 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 34 H 0.09 0.71 8.14 -51.93 -0.42 0.28 16 35 H 0.08 0.81 8.01 -51.93 -0.42 0.39 16 36 H 0.05 0.67 7.40 -51.93 -0.38 0.28 16 37 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 38 H 0.04 0.34 8.14 -51.93 -0.42 -0.08 16 39 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 40 H 0.34 2.62 9.08 -39.29 -0.36 2.27 16 41 H 0.35 3.33 8.55 -39.29 -0.34 2.99 16 42 H 0.09 1.01 8.11 -51.93 -0.42 0.59 16 43 H 0.09 1.20 7.64 -51.93 -0.40 0.80 16 44 H 0.11 2.52 7.60 -52.49 -0.40 2.12 16 LS Contribution 365.04 15.07 5.50 5.50 Total: -1.00 -30.12 365.04 -10.98 -41.10 By element: Atomic # 1 Polarization: 18.12 SS G_CDS: -6.26 Total: 11.86 kcal Atomic # 6 Polarization: -29.41 SS G_CDS: -2.79 Total: -32.21 kcal Atomic # 7 Polarization: -43.12 SS G_CDS: 0.23 Total: -42.89 kcal Atomic # 8 Polarization: -44.68 SS G_CDS: -2.03 Total: -46.71 kcal Atomic # 14 Polarization: 17.85 SS G_CDS: -5.03 Total: 12.82 kcal Atomic # 16 Polarization: 51.13 SS G_CDS: -0.60 Total: 50.53 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -30.12 -10.98 -41.10 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001580055293.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.049 kcal (2) G-P(sol) polarization free energy of solvation -30.119 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.168 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.984 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.103 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.152 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds