Wall clock time and date at job start Tue Mar 31 2020 23:15:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30825 * 1 3 3 Si 1.86801 * 119.99845 * 2 1 4 4 H 1.48499 * 109.47020 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47118 * 300.00336 * 3 2 1 6 6 H 1.48505 * 109.46900 * 60.00694 * 3 2 1 7 7 C 1.39943 * 119.99997 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00144 * 162.32194 * 7 2 1 9 9 C 1.41396 * 119.99802 * 342.31188 * 7 2 1 10 10 C 1.40731 * 120.24938 * 335.20457 * 9 7 2 11 11 C 1.37593 * 119.74953 * 180.02562 * 10 9 7 12 12 C 1.38654 * 120.24826 * 359.97438 * 11 10 9 13 13 C 1.38614 * 120.50198 * 359.97438 * 12 11 10 14 14 S 1.76206 * 119.87826 * 180.02562 * 13 12 11 15 15 O 1.42103 * 106.39904 * 336.46293 * 14 13 12 16 16 O 1.42093 * 106.40233 * 203.54238 * 14 13 12 17 17 N 1.65597 * 107.21676 * 90.00042 * 14 13 12 18 18 C 1.47513 * 118.75669 * 90.00024 * 17 14 13 19 19 C 1.53572 * 111.02596 * 138.37176 * 18 17 14 20 20 C 1.51537 * 109.58297 * 320.02565 * 19 18 17 21 21 O 1.42153 * 108.76559 * 91.39737 * 20 19 18 22 22 C 1.38012 * 119.43658 * 272.78152 * 21 20 19 23 23 H 1.08994 * 109.46788 * 303.41993 * 22 21 20 24 24 C 1.53002 * 109.46699 * 183.42646 * 22 21 20 25 25 N 1.46904 * 109.46961 * 65.00297 * 24 22 21 26 26 C 1.45117 * 118.76006 * 270.00125 * 17 14 13 27 27 C 1.37638 * 120.24846 * 0.29929 * 13 12 11 28 28 H 0.97005 * 120.00126 * 359.97438 * 1 2 3 29 29 H 1.08007 * 120.12422 * 0.03583 * 10 9 7 30 30 H 1.08003 * 119.87726 * 180.02562 * 11 10 9 31 31 H 1.08005 * 119.75463 * 179.97438 * 12 11 10 32 32 H 1.09001 * 109.16603 * 17.97204 * 18 17 14 33 33 H 1.09004 * 109.12407 * 258.74212 * 18 17 14 34 34 H 1.09004 * 109.45325 * 199.98613 * 19 18 17 35 35 H 1.09005 * 109.45020 * 80.05779 * 19 18 17 36 36 H 1.09000 * 109.58747 * 331.61036 * 20 19 18 37 37 H 1.08997 * 109.58556 * 211.18228 * 20 19 18 38 38 H 1.08992 * 109.47287 * 304.99450 * 24 22 21 39 39 H 1.09007 * 109.47034 * 184.99405 * 24 22 21 40 40 H 1.00904 * 110.99468 * 180.02562 * 25 24 22 41 41 H 1.00900 * 110.99732 * 303.94856 * 25 24 22 42 42 H 1.09001 * 109.46313 * 149.26657 * 26 17 14 43 43 H 1.09005 * 109.46241 * 29.30938 * 26 17 14 44 44 H 1.07999 * 120.13098 * 179.70719 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 3.7022 1.3464 -0.0006 5 1 1.8834 2.3965 -1.2124 6 1 1.8835 2.3964 1.2126 7 6 2.0080 -1.2119 -0.0005 8 1 3.0497 -1.2339 -0.2846 9 6 1.3511 -2.4077 0.3710 10 6 0.2227 -2.3651 1.2109 11 6 -0.4083 -3.5350 1.5664 12 6 0.0633 -4.7526 1.0999 13 6 1.1732 -4.8064 0.2713 14 16 1.7580 -6.3627 -0.3126 15 8 1.2988 -7.3372 0.6141 16 8 3.1303 -6.1810 -0.6333 17 7 0.9810 -6.6736 -1.7415 18 6 1.5956 -6.2086 -2.9993 19 6 1.4760 -7.2748 -4.0981 20 6 1.7188 -8.6470 -3.5029 21 8 0.4726 -9.1948 -3.0933 22 6 -0.0103 -8.9128 -1.8315 23 1 0.7255 -9.2130 -1.0855 24 6 -1.3132 -9.6811 -1.6007 25 7 -1.0368 -11.1239 -1.5976 26 6 -0.2788 -7.3932 -1.7091 27 6 1.8235 -3.6493 -0.0927 28 1 -0.4850 0.8401 0.0004 29 1 -0.1466 -1.4177 1.5750 30 1 -1.2746 -3.5048 2.2106 31 1 -0.4379 -5.6661 1.3843 32 1 2.6493 -5.9919 -2.8240 33 1 1.0929 -5.2987 -3.3274 34 1 2.2155 -7.0800 -4.8750 35 1 0.4765 -7.2387 -4.5316 36 1 2.3805 -8.5597 -2.6412 37 1 2.1742 -9.2948 -4.2518 38 1 -2.0186 -9.4479 -2.3981 39 1 -1.7408 -9.3911 -0.6409 40 1 -1.8824 -11.6536 -1.4473 41 1 -0.5806 -11.4065 -2.4521 42 1 -0.9049 -7.0670 -2.5396 43 1 -0.7894 -7.1893 -0.7678 44 1 2.6909 -3.6938 -0.7346 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001580055293.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:15:03 Heat of formation + Delta-G solvation = -118.533352 kcal Electronic energy + Delta-G solvation = -28601.499908 eV Core-core repulsion = 24644.484340 eV Total energy + Delta-G solvation = -3957.015569 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -40.77247 -39.47988 -38.43826 -37.00450 -36.82166 -35.72360 -35.69066 -33.22078 -31.94797 -31.62901 -29.58874 -27.64225 -27.35609 -24.92589 -23.69566 -22.84091 -22.43999 -22.06366 -20.31749 -19.49935 -18.77553 -17.92755 -17.80201 -17.53991 -17.15718 -16.89434 -16.55506 -16.36805 -15.85001 -15.47996 -15.35300 -15.12952 -15.08684 -14.66222 -14.33717 -13.98774 -13.81419 -13.73354 -13.43356 -13.37149 -13.17805 -13.14527 -13.08281 -13.04821 -12.84229 -12.66406 -12.63314 -12.24823 -12.21608 -11.81412 -11.58656 -11.54472 -11.35815 -11.17114 -10.64156 -10.01337 -9.82806 -9.59407 -9.55578 -8.75800 -6.48048 -0.61346 0.36028 0.80728 1.36562 1.43067 1.51573 1.94747 2.16299 2.52789 2.67148 2.67969 3.26816 3.44757 3.53120 3.69031 3.91360 4.01508 4.08425 4.18869 4.26232 4.27550 4.32713 4.39602 4.52219 4.63557 4.68301 4.74684 4.80134 4.86140 4.87999 4.97917 5.00835 5.03069 5.11259 5.17719 5.23382 5.37265 5.52161 5.61941 5.85039 5.90676 6.06901 6.26151 6.49416 6.60995 6.67572 6.76859 6.81449 8.22400 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.019302 B = 0.003311 C = 0.003133 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1450.294735 B = 8454.199698 C = 8935.797987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.820 5.820 2 C 0.039 3.961 3 Si 0.983 3.017 4 H -0.260 1.260 5 H -0.263 1.263 6 H -0.263 1.263 7 C -0.497 4.497 8 H 0.078 0.922 9 C 0.064 3.936 10 C -0.141 4.141 11 C -0.121 4.121 12 C -0.151 4.151 13 C -0.639 4.639 14 S 2.700 3.300 15 O -0.979 6.979 16 O -0.991 6.991 17 N -0.987 5.987 18 C 0.099 3.901 19 C -0.148 4.148 20 C 0.070 3.930 21 O -0.387 6.387 22 C 0.088 3.912 23 H 0.038 0.962 24 C 0.077 3.923 25 N -0.858 5.858 26 C 0.085 3.915 27 C -0.147 4.147 28 H 0.292 0.708 29 H 0.114 0.886 30 H 0.128 0.872 31 H 0.131 0.869 32 H 0.087 0.913 33 H 0.075 0.925 34 H 0.113 0.887 35 H 0.088 0.912 36 H 0.031 0.969 37 H 0.118 0.882 38 H 0.052 0.948 39 H 0.091 0.909 40 H 0.353 0.647 41 H 0.349 0.651 42 H 0.108 0.892 43 H 0.089 0.911 44 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.623 -12.545 -8.535 15.600 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.445 5.445 2 C -0.177 4.177 3 Si 0.803 3.197 4 H -0.184 1.184 5 H -0.187 1.187 6 H -0.187 1.187 7 C -0.526 4.526 8 H 0.097 0.903 9 C 0.061 3.939 10 C -0.161 4.161 11 C -0.141 4.141 12 C -0.171 4.171 13 C -0.728 4.728 14 S 2.795 3.205 15 O -0.969 6.969 16 O -0.981 6.981 17 N -0.825 5.825 18 C -0.025 4.025 19 C -0.187 4.187 20 C -0.006 4.006 21 O -0.306 6.306 22 C 0.027 3.973 23 H 0.056 0.944 24 C -0.055 4.055 25 N -0.389 5.389 26 C -0.041 4.041 27 C -0.168 4.168 28 H 0.103 0.897 29 H 0.132 0.868 30 H 0.146 0.854 31 H 0.149 0.851 32 H 0.105 0.895 33 H 0.093 0.907 34 H 0.131 0.869 35 H 0.107 0.893 36 H 0.050 0.950 37 H 0.136 0.864 38 H 0.070 0.930 39 H 0.109 0.891 40 H 0.167 0.833 41 H 0.163 0.837 42 H 0.126 0.874 43 H 0.107 0.893 44 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -2.865 -12.879 -7.660 15.257 hybrid contribution -0.485 1.916 -0.327 2.003 sum -3.351 -10.964 -7.987 13.972 Atomic orbital electron populations 1.69814 1.08892 1.30988 1.34854 1.26733 0.95543 1.04442 0.90981 0.85144 0.79374 0.76006 0.79171 1.18368 1.18740 1.18708 1.19874 0.98469 0.92202 1.42007 0.90341 1.18042 0.92577 0.92891 0.90367 1.21650 0.98343 0.97669 0.98409 1.21150 0.99899 0.92589 1.00416 1.20458 0.96999 0.98089 1.01581 1.30288 1.09261 1.19184 1.14028 1.01432 0.72842 0.73454 0.72753 1.93500 1.82261 1.58769 1.62399 1.93470 1.33079 1.87324 1.84233 1.57141 1.34879 1.69434 1.21093 1.22020 0.98720 0.98425 0.83355 1.22375 1.05172 0.93676 0.97449 1.22359 0.84527 0.94953 0.98797 1.86140 1.38385 1.73642 1.32412 1.22110 0.96797 0.93124 0.85245 0.94364 1.21699 0.93403 0.88452 1.01945 1.58619 1.31749 1.04014 1.44567 1.22316 0.84900 0.91887 1.05048 1.20836 1.01058 0.92099 1.02830 0.89673 0.86804 0.85393 0.85125 0.89496 0.90667 0.86918 0.89337 0.95039 0.86425 0.92956 0.89113 0.83263 0.83747 0.87408 0.89286 0.87280 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -40.64 10.97 21.83 0.24 -40.40 16 2 C 0.04 1.88 5.14 85.26 0.44 2.32 16 3 Si 0.98 36.73 29.59 68.60 2.03 38.76 16 4 H -0.26 -9.69 7.11 99.48 0.71 -8.98 16 5 H -0.26 -9.33 7.11 99.48 0.71 -8.62 16 6 H -0.26 -9.41 7.11 99.48 0.71 -8.70 16 7 C -0.50 -26.16 9.05 23.46 0.21 -25.95 16 8 H 0.08 4.03 7.91 -2.91 -0.02 4.01 16 9 C 0.06 3.43 5.57 -21.29 -0.12 3.31 16 10 C -0.14 -7.16 8.70 22.73 0.20 -6.96 16 11 C -0.12 -5.41 10.02 22.22 0.22 -5.19 16 12 C -0.15 -6.46 9.53 22.46 0.21 -6.24 16 13 C -0.64 -28.28 5.97 22.22 0.13 -28.15 16 14 S 2.70 103.14 5.57 -56.49 -0.31 102.83 16 15 O -0.98 -39.37 15.65 -128.00 -2.00 -41.37 16 16 O -0.99 -42.00 15.65 -128.00 -2.00 -44.01 16 17 N -0.99 -29.28 2.49 -512.18 -1.28 -30.56 16 18 C 0.10 2.52 6.30 86.38 0.54 3.06 16 19 C -0.15 -2.70 5.78 30.31 0.18 -2.52 16 20 C 0.07 1.42 6.37 71.50 0.46 1.87 16 21 O -0.39 -8.64 8.98 -117.82 -1.06 -9.69 16 22 C 0.09 2.16 2.85 31.21 0.09 2.25 16 23 H 0.04 1.17 7.62 -2.39 -0.02 1.15 16 24 C 0.08 1.49 6.49 86.30 0.56 2.05 16 25 N -0.86 -15.69 9.62 -186.71 -1.80 -17.49 16 26 C 0.08 2.14 4.71 87.25 0.41 2.55 16 27 C -0.15 -7.28 9.26 22.73 0.21 -7.07 16 28 H 0.29 12.95 8.30 -92.70 -0.77 12.18 16 29 H 0.11 5.91 6.18 -2.91 -0.02 5.90 16 30 H 0.13 4.81 8.06 -2.91 -0.02 4.78 16 31 H 0.13 4.86 7.60 -2.91 -0.02 4.84 16 32 H 0.09 2.40 6.69 -2.39 -0.02 2.38 16 33 H 0.07 1.86 8.14 -2.38 -0.02 1.84 16 34 H 0.11 1.49 8.14 -2.38 -0.02 1.47 16 35 H 0.09 1.51 8.01 -2.38 -0.02 1.49 16 36 H 0.03 0.78 7.40 -2.39 -0.02 0.76 16 37 H 0.12 1.75 8.14 -2.39 -0.02 1.73 16 38 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 39 H 0.09 1.73 8.14 -2.38 -0.02 1.71 16 40 H 0.35 4.73 9.08 -89.69 -0.81 3.92 16 41 H 0.35 6.04 8.55 -89.69 -0.77 5.27 16 42 H 0.11 2.27 8.11 -2.39 -0.02 2.25 16 43 H 0.09 2.25 7.64 -2.38 -0.02 2.24 16 44 H 0.11 5.24 7.60 -2.91 -0.02 5.21 16 Total: -1.00 -65.96 365.04 -2.98 -68.94 By element: Atomic # 1 Polarization: 38.20 SS G_CDS: -0.54 Total: 37.66 kcal Atomic # 6 Polarization: -68.41 SS G_CDS: 3.74 Total: -64.67 kcal Atomic # 7 Polarization: -85.61 SS G_CDS: -2.83 Total: -88.45 kcal Atomic # 8 Polarization: -90.01 SS G_CDS: -5.06 Total: -95.08 kcal Atomic # 14 Polarization: 36.73 SS G_CDS: 2.03 Total: 38.76 kcal Atomic # 16 Polarization: 103.14 SS G_CDS: -0.31 Total: 102.83 kcal Total: -65.96 -2.98 -68.94 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001580055293.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.593 kcal (2) G-P(sol) polarization free energy of solvation -65.960 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.553 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.981 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.940 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.533 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds