Wall clock time and date at job start Tue Mar 31 2020 23:45:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31636 * 1 3 3 Si 1.86796 * 120.00038 * 2 1 4 4 H 1.48504 * 109.46919 * 269.99641 * 3 2 1 5 5 H 1.48491 * 109.47535 * 29.99420 * 3 2 1 6 6 H 1.48499 * 109.47285 * 149.99782 * 3 2 1 7 7 C 1.38802 * 119.99702 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99969 * 180.02562 * 7 2 1 9 9 S 1.76199 * 119.99827 * 0.02562 * 7 2 1 10 10 C 1.81001 * 99.99614 * 179.97438 * 9 7 2 11 11 C 1.50701 * 109.47123 * 179.97438 * 10 9 7 12 12 O 1.21284 * 119.99969 * 359.97438 * 11 10 9 13 13 N 1.34779 * 120.00294 * 179.97438 * 11 10 9 14 14 C 1.47070 * 136.05648 * 4.98781 * 13 11 10 15 15 C 1.53495 * 87.98233 * 207.15357 * 14 13 11 16 16 C 1.47064 * 136.05781 * 185.03214 * 13 11 10 17 17 H 1.08995 * 113.46770 * 267.62637 * 16 13 11 18 18 C 1.52998 * 113.46743 * 38.01204 * 16 13 11 19 19 N 1.46502 * 109.47052 * 184.15288 * 18 16 13 20 20 C 1.34776 * 119.99847 * 184.97716 * 19 18 16 21 21 O 1.21279 * 120.00374 * 359.97438 * 20 19 18 22 22 C 1.50706 * 120.00121 * 179.97438 * 20 19 18 23 23 H 1.08998 * 115.50613 * 34.62173 * 22 20 19 24 24 C 1.52992 * 117.43303 * 179.97438 * 22 20 19 25 25 H 1.08996 * 119.81460 * 355.36187 * 24 22 20 26 26 C 1.54487 * 118.06510 * 199.10092 * 24 22 20 27 27 O 1.44427 * 104.80124 * 321.13109 * 26 24 22 28 28 C 1.44426 * 105.27603 * 319.48717 * 27 26 24 29 29 C 1.53000 * 117.43116 * 249.34679 * 22 20 19 30 30 H 1.09003 * 119.80673 * 4.63240 * 29 22 20 31 31 H 0.97000 * 119.99654 * 0.02562 * 1 2 3 32 32 H 1.08996 * 109.47554 * 60.00026 * 10 9 7 33 33 H 1.09003 * 109.47294 * 299.99419 * 10 9 7 34 34 H 1.09003 * 113.46025 * 321.93388 * 14 13 11 35 35 H 1.08996 * 113.46712 * 92.37266 * 14 13 11 36 36 H 1.08998 * 114.20147 * 220.33833 * 15 14 13 37 37 H 1.08997 * 114.20634 * 87.52289 * 15 14 13 38 38 H 1.09000 * 109.47077 * 304.14504 * 18 16 13 39 39 H 1.09004 * 109.47587 * 64.15175 * 18 16 13 40 40 H 0.96995 * 120.00104 * 4.97258 * 19 18 16 41 41 H 1.08996 * 110.36956 * 79.95922 * 26 24 22 42 42 H 1.08996 * 110.37003 * 202.29885 * 26 24 22 43 43 H 1.08995 * 110.37427 * 159.34495 * 28 27 26 44 44 H 1.08999 * 110.37121 * 281.57384 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3164 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 2.4979 2.0463 -1.4001 5 1 1.4479 2.6527 0.6999 6 1 3.5479 1.4402 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 16 1.1292 -2.7279 0.0005 10 6 2.5157 -3.8914 0.0005 11 6 1.9872 -5.3027 0.0012 12 8 0.7909 -5.5023 0.0021 13 7 2.8439 -6.3432 0.0008 14 6 4.3020 -6.5144 0.0885 15 6 4.1411 -7.8231 -0.6973 16 6 2.7322 -7.8069 -0.0884 17 1 2.6734 -8.2977 0.8830 18 6 1.6437 -8.2770 -1.0554 19 7 1.5411 -9.7375 -1.0024 20 6 0.7142 -10.3859 -1.8463 21 8 0.0546 -9.7605 -2.6492 22 6 0.6090 -11.8884 -1.7923 23 1 0.7032 -12.3301 -0.8003 24 6 -0.3480 -12.5638 -2.7765 25 1 -0.9755 -11.9545 -3.4268 26 6 -0.8160 -14.0025 -2.4639 27 8 0.3510 -14.6612 -1.9251 28 6 1.4553 -14.2009 -2.7341 29 6 1.1810 -12.6778 -2.9714 30 1 1.7083 -12.1545 -3.7691 31 1 -0.4849 0.8401 -0.0004 32 1 3.1244 -3.7314 0.8905 33 1 3.1243 -3.7314 -0.8895 34 1 4.8619 -5.7503 -0.4508 35 1 4.6613 -6.6610 1.1070 36 1 4.7721 -8.6379 -0.3423 37 1 4.1616 -7.6997 -1.7801 38 1 0.6889 -7.8352 -0.7703 39 1 1.8994 -7.9673 -2.0688 40 1 2.0683 -10.2377 -0.3601 41 1 -1.6183 -13.9887 -1.7263 42 1 -1.1459 -14.5007 -3.3755 43 1 2.3976 -14.3395 -2.2041 44 1 1.4748 -14.7309 -3.6863 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001584777503.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:45:43 Heat of formation + Delta-G solvation = -38.740512 kcal Electronic energy + Delta-G solvation = -26059.241531 eV Core-core repulsion = 22105.686040 eV Total energy + Delta-G solvation = -3953.555491 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.15135 -40.53838 -39.14653 -37.56317 -35.02887 -34.67632 -32.43904 -30.83356 -29.17066 -29.02061 -28.19108 -26.57579 -25.48492 -23.66827 -22.30936 -21.96107 -21.16131 -20.40176 -18.99354 -18.10671 -17.70795 -16.73819 -16.53770 -16.36603 -16.03561 -15.82426 -15.36965 -15.18293 -15.09474 -14.81278 -14.35436 -14.13663 -13.90271 -13.71931 -13.40849 -13.08297 -12.94602 -12.74626 -12.50726 -12.25797 -12.15275 -12.03058 -11.95839 -11.68342 -11.07562 -11.04404 -10.90879 -10.81768 -10.77279 -10.68502 -10.28850 -10.02545 -9.83574 -9.48607 -9.20612 -9.07686 -8.70867 -8.25205 -6.51766 -6.22472 -3.93576 2.11817 2.43279 2.87103 3.02171 3.15783 3.21690 3.23730 3.29266 3.46149 3.57278 4.02860 4.10281 4.11852 4.19060 4.26707 4.33470 4.49193 4.62420 4.72500 4.77548 4.87356 4.90299 4.91326 5.09827 5.12149 5.12754 5.17355 5.25982 5.28675 5.41001 5.42433 5.49670 5.57610 5.60899 5.77299 5.82241 5.91285 5.99024 6.11506 6.19552 6.21833 7.19079 7.58456 7.78103 7.96040 8.34136 8.48959 9.22551 10.84951 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.026611 B = 0.001819 C = 0.001737 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1051.942050 B =15391.153539 C =16113.933154 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.073 3.927 3 Si 0.920 3.080 4 H -0.277 1.277 5 H -0.282 1.282 6 H -0.272 1.272 7 C -0.536 4.536 8 H 0.073 0.927 9 S -0.059 6.059 10 C -0.144 4.144 11 C 0.561 3.439 12 O -0.509 6.509 13 N -0.647 5.647 14 C 0.101 3.899 15 C -0.151 4.151 16 C 0.124 3.876 17 H 0.095 0.905 18 C 0.112 3.888 19 N -0.720 5.720 20 C 0.543 3.457 21 O -0.531 6.531 22 C -0.146 4.146 23 H 0.127 0.873 24 C -0.167 4.167 25 H 0.137 0.863 26 C 0.071 3.929 27 O -0.373 6.373 28 C 0.072 3.928 29 C -0.173 4.173 30 H 0.133 0.867 31 H 0.269 0.731 32 H 0.088 0.912 33 H 0.089 0.911 34 H 0.082 0.918 35 H 0.085 0.915 36 H 0.090 0.910 37 H 0.097 0.903 38 H 0.087 0.913 39 H 0.077 0.923 40 H 0.401 0.599 41 H 0.099 0.901 42 H 0.076 0.924 43 H 0.098 0.902 44 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.887 -29.355 -3.015 31.122 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.136 4.136 3 Si 0.746 3.254 4 H -0.202 1.202 5 H -0.207 1.207 6 H -0.197 1.197 7 C -0.684 4.684 8 H 0.091 0.909 9 S 0.167 5.833 10 C -0.294 4.294 11 C 0.351 3.649 12 O -0.382 6.382 13 N -0.387 5.387 14 C -0.022 4.022 15 C -0.189 4.189 16 C 0.019 3.981 17 H 0.112 0.888 18 C -0.012 4.012 19 N -0.372 5.372 20 C 0.329 3.671 21 O -0.407 6.407 22 C -0.167 4.167 23 H 0.145 0.855 24 C -0.186 4.186 25 H 0.155 0.845 26 C -0.005 4.005 27 O -0.292 6.292 28 C -0.004 4.004 29 C -0.192 4.192 30 H 0.151 0.849 31 H 0.079 0.921 32 H 0.107 0.893 33 H 0.108 0.892 34 H 0.100 0.900 35 H 0.103 0.897 36 H 0.108 0.892 37 H 0.115 0.885 38 H 0.106 0.894 39 H 0.095 0.905 40 H 0.235 0.765 41 H 0.118 0.882 42 H 0.094 0.906 43 H 0.116 0.884 44 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 7.284 -28.991 -3.413 30.087 hybrid contribution 2.254 1.392 0.276 2.664 sum 9.538 -27.599 -3.138 29.369 Atomic orbital electron populations 1.70023 1.05954 1.27491 1.46736 1.25002 0.95041 0.99045 0.94513 0.86154 0.79378 0.81518 0.78362 1.20249 1.20723 1.19704 1.22853 0.94889 0.91574 1.59089 0.90917 1.85441 1.04759 0.96330 1.96721 1.23468 1.06571 0.94527 1.04868 1.20027 0.85343 0.84939 0.74597 1.90729 1.14774 1.84815 1.47886 1.49760 1.08342 1.04911 1.75710 1.22888 0.82025 0.96887 1.00412 1.23588 0.95793 0.98214 1.01327 1.22741 0.94421 0.82532 0.98399 0.88757 1.21617 1.00612 0.78964 1.00016 1.45716 1.45031 1.07746 1.38681 1.19448 0.79213 0.87943 0.80526 1.90761 1.43734 1.68457 1.37733 1.22080 1.05459 0.91455 0.97752 0.85498 1.24041 0.93495 0.98144 1.02914 0.84510 1.23017 0.89290 0.88350 0.99861 1.89179 1.16907 1.67756 1.55331 1.23333 0.91176 0.89769 0.96157 1.24509 0.98102 0.96456 1.00136 0.84941 0.92147 0.89336 0.89226 0.89956 0.89679 0.89201 0.88459 0.89444 0.90503 0.76516 0.88242 0.90624 0.88354 0.90776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.36 13.22 55.49 0.73 -25.63 16 2 C 0.07 2.11 5.49 -17.43 -0.10 2.01 16 3 Si 0.92 21.50 29.55 -169.99 -5.02 16.48 16 4 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 5 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 6 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 7 C -0.54 -15.38 9.50 30.94 0.29 -15.08 16 8 H 0.07 1.97 7.80 -52.49 -0.41 1.56 16 9 S -0.06 -1.63 20.57 -107.50 -2.21 -3.84 16 10 C -0.14 -2.98 5.99 36.01 0.22 -2.76 16 11 C 0.56 10.86 7.97 -10.98 -0.09 10.77 16 12 O -0.51 -11.90 15.46 5.55 0.09 -11.82 16 13 N -0.65 -8.89 3.57 -177.44 -0.63 -9.52 16 14 C 0.10 0.89 8.42 -8.50 -0.07 0.82 16 15 C -0.15 -1.03 8.02 -26.22 -0.21 -1.24 16 16 C 0.12 1.24 4.06 -72.39 -0.29 0.94 16 17 H 0.09 0.78 8.14 -51.93 -0.42 0.35 16 18 C 0.11 1.37 5.47 -4.04 -0.02 1.35 16 19 N -0.72 -6.65 5.55 -60.29 -0.33 -6.99 16 20 C 0.54 6.14 7.61 -10.98 -0.08 6.06 16 21 O -0.53 -8.54 16.34 5.56 0.09 -8.45 16 22 C -0.15 -1.18 5.53 -91.77 -0.51 -1.69 16 23 H 0.13 0.86 8.04 -51.93 -0.42 0.45 16 24 C -0.17 -1.32 6.64 -89.03 -0.59 -1.91 16 25 H 0.14 1.24 7.81 -51.93 -0.41 0.84 16 26 C 0.07 0.46 7.53 37.94 0.29 0.74 16 27 O -0.37 -2.88 11.30 -35.23 -0.40 -3.27 16 28 C 0.07 0.39 7.57 39.08 0.30 0.69 16 29 C -0.17 -1.15 7.13 -87.88 -0.63 -1.77 16 30 H 0.13 0.86 8.14 -51.93 -0.42 0.43 16 31 H 0.27 7.58 8.31 -40.82 -0.34 7.24 16 32 H 0.09 1.70 8.14 -51.92 -0.42 1.27 16 33 H 0.09 1.73 8.14 -51.91 -0.42 1.31 16 34 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.09 0.35 8.14 -51.93 -0.42 -0.07 16 37 H 0.10 0.72 7.95 -51.93 -0.41 0.30 16 38 H 0.09 1.45 7.15 -51.93 -0.37 1.08 16 39 H 0.08 1.05 7.89 -51.93 -0.41 0.64 16 40 H 0.40 2.25 8.48 -40.82 -0.35 1.91 16 41 H 0.10 0.57 8.14 -51.93 -0.42 0.14 16 42 H 0.08 0.38 8.14 -51.93 -0.42 -0.05 16 43 H 0.10 0.39 8.14 -51.93 -0.42 -0.03 16 44 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 LS Contribution 386.81 15.07 5.83 5.83 Total: -1.00 -38.44 386.81 -9.92 -48.35 By element: Atomic # 1 Polarization: 6.50 SS G_CDS: -6.56 Total: -0.06 kcal Atomic # 6 Polarization: 0.42 SS G_CDS: -1.50 Total: -1.08 kcal Atomic # 7 Polarization: -41.90 SS G_CDS: -0.23 Total: -42.13 kcal Atomic # 8 Polarization: -23.32 SS G_CDS: -0.22 Total: -23.55 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Atomic # 16 Polarization: -1.63 SS G_CDS: -2.21 Total: -3.84 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -38.44 -9.92 -48.35 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001584777503.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.613 kcal (2) G-P(sol) polarization free energy of solvation -38.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.918 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.354 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.741 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds