Wall clock time and date at job start Tue Mar 31 2020 23:51:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 119.99774 * 2 1 4 4 H 1.48495 * 109.47479 * 179.97438 * 3 2 1 5 5 H 1.48506 * 109.47009 * 299.99659 * 3 2 1 6 6 H 1.48503 * 109.47428 * 59.99362 * 3 2 1 7 7 C 1.37872 * 120.00287 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00115 * 180.02562 * 7 2 1 9 9 C 1.50706 * 120.00004 * 0.02562 * 7 2 1 10 10 O 1.42900 * 109.46802 * 179.97438 * 9 7 2 11 11 C 1.42907 * 113.99820 * 179.97438 * 10 9 7 12 12 C 1.52993 * 109.47103 * 179.97438 * 11 10 9 13 13 N 1.46904 * 109.46959 * 65.00427 * 12 11 10 14 14 C 1.46844 * 111.00328 * 65.78729 * 13 12 11 15 15 C 1.53032 * 109.52527 * 185.83771 * 14 13 12 16 16 C 1.53114 * 109.28141 * 300.82107 * 15 14 13 17 17 C 1.53123 * 109.16198 * 57.65126 * 16 15 14 18 18 H 1.09011 * 109.49940 * 62.28508 * 17 16 15 19 19 C 1.50701 * 109.50632 * 182.40528 * 17 16 15 20 20 N 1.29396 * 124.70367 * 59.50369 * 19 17 16 21 21 C 1.30912 * 117.46195 * 179.83656 * 20 19 17 22 22 C 1.36760 * 113.93575 * 0.43955 * 21 20 19 23 23 C 1.46494 * 126.17788 * 179.76882 * 22 21 20 24 24 O 1.21611 * 119.99856 * 180.02562 * 23 22 21 25 25 O 1.34875 * 120.00407 * 0.02562 * 23 22 21 26 26 S 1.70925 * 124.70442 * 239.80350 * 19 17 16 27 27 C 1.46846 * 110.99942 * 189.99883 * 13 12 11 28 28 H 0.96999 * 120.00236 * 0.02562 * 1 2 3 29 29 H 1.09002 * 109.46735 * 60.00288 * 9 7 2 30 30 H 1.08999 * 109.46946 * 299.99748 * 9 7 2 31 31 H 1.09005 * 109.46889 * 59.99833 * 11 10 9 32 32 H 1.08999 * 109.46844 * 300.00067 * 11 10 9 33 33 H 1.08995 * 109.47437 * 305.00237 * 12 11 10 34 34 H 1.09000 * 109.47120 * 184.99963 * 12 11 10 35 35 H 1.09000 * 109.46271 * 305.85568 * 14 13 12 36 36 H 1.09008 * 109.46154 * 65.83367 * 14 13 12 37 37 H 1.09000 * 109.50025 * 60.76400 * 15 14 13 38 38 H 1.08996 * 109.50621 * 180.87820 * 15 14 13 39 39 H 1.09000 * 109.52528 * 177.55766 * 16 15 14 40 40 H 1.09001 * 109.52673 * 297.68468 * 16 15 14 41 41 H 1.07998 * 123.02812 * 180.21362 * 21 20 19 42 42 H 0.96697 * 117.00085 * 179.97438 * 25 23 22 43 43 H 1.09008 * 109.46456 * 294.17536 * 27 13 12 44 44 H 1.09003 * 109.46474 * 54.14041 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3466 0.0006 5 1 1.8903 2.3964 -1.2126 6 1 1.8902 2.3966 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2511 -2.4992 0.0005 10 8 2.1798 -3.5852 0.0005 11 6 1.5654 -4.8754 0.0011 12 6 2.6483 -5.9561 0.0004 13 7 3.4093 -5.8875 1.2552 14 6 2.5627 -6.2346 2.4037 15 6 3.3441 -6.0125 3.7007 16 6 4.6025 -6.8847 3.6884 17 6 5.4429 -6.5372 2.4565 18 1 5.7610 -5.4962 2.5148 19 6 6.6542 -7.4322 2.4049 20 7 6.6135 -8.7239 2.3396 21 6 7.7556 -9.3625 2.2981 22 6 8.8506 -8.5444 2.3406 23 6 10.2514 -8.9725 2.3148 24 8 11.1411 -8.1446 2.3587 25 8 10.5544 -10.2848 2.2425 26 16 8.2723 -6.8823 2.4319 27 6 4.6006 -6.7440 1.1956 28 1 -0.4850 0.8400 -0.0004 29 1 0.6249 -2.5571 -0.8897 30 1 0.6242 -2.5567 0.8903 31 1 0.9449 -4.9827 -0.8887 32 1 0.9455 -4.9822 0.8913 33 1 3.3213 -5.7956 -0.8418 34 1 2.1824 -6.9374 -0.0887 35 1 1.6734 -5.6043 2.4030 36 1 2.2662 -7.2812 2.3332 37 1 3.6292 -4.9633 3.7786 38 1 2.7208 -6.2850 4.5523 39 1 5.1843 -6.6974 4.5909 40 1 4.3168 -7.9359 3.6509 41 1 7.8265 -10.4386 2.2395 42 1 11.4925 -10.5186 2.2278 43 1 4.2944 -7.7882 1.1307 44 1 5.1915 -6.4838 0.3174 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601068380.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:51:10 Heat of formation + Delta-G solvation = -119.009686 kcal Electronic energy + Delta-G solvation = -26469.884541 eV Core-core repulsion = 22512.848317 eV Total energy + Delta-G solvation = -3957.036224 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.47823 -40.85730 -39.84158 -38.30694 -37.15351 -35.41266 -34.67841 -32.98183 -31.10144 -30.40295 -28.71994 -27.11946 -25.19820 -24.45649 -24.32540 -23.79825 -22.56390 -21.41067 -20.30462 -19.40304 -18.68276 -18.51091 -17.79983 -17.41742 -17.27928 -16.92074 -16.46902 -16.11923 -15.88791 -15.73054 -15.47859 -15.39201 -15.05407 -14.80394 -14.57084 -14.39817 -14.15796 -13.62397 -13.58643 -13.21479 -12.96820 -12.72731 -12.71493 -12.69625 -12.55084 -12.40241 -12.25545 -12.16260 -11.93783 -11.71125 -11.55583 -11.41586 -11.18614 -10.82342 -10.71951 -10.67519 -10.12988 -10.06346 -9.16035 -8.29179 -6.40365 -1.04641 -0.09906 0.49852 1.09960 1.41557 1.42665 1.57673 1.83998 2.09406 2.37216 2.72697 3.04576 3.06227 3.28045 3.68029 3.76367 3.82306 3.90799 4.12015 4.15826 4.29745 4.33013 4.34700 4.40865 4.49131 4.61425 4.64208 4.70500 4.79355 4.86268 4.87346 4.94231 5.00931 5.01500 5.12423 5.20777 5.23518 5.41882 5.44841 5.59216 6.01144 6.12945 6.20824 6.44543 6.60957 6.83369 6.90660 7.31843 8.83305 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.015240 B = 0.002207 C = 0.002038 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1836.814040 B =12684.637869 C =13738.293616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.004 3.996 3 Si 0.981 3.019 4 H -0.264 1.264 5 H -0.272 1.272 6 H -0.272 1.272 7 C -0.540 4.540 8 H 0.060 0.940 9 C 0.210 3.790 10 O -0.393 6.393 11 C 0.057 3.943 12 C 0.072 3.928 13 N -0.547 5.547 14 C 0.051 3.949 15 C -0.112 4.112 16 C -0.096 4.096 17 C -0.013 4.013 18 H 0.100 0.900 19 C 0.073 3.927 20 N -0.491 5.491 21 C 0.144 3.856 22 C -0.333 4.333 23 C 0.575 3.425 24 O -0.549 6.549 25 O -0.494 6.494 26 S 0.248 5.752 27 C 0.079 3.921 28 H 0.270 0.730 29 H -0.018 1.018 30 H -0.017 1.017 31 H 0.045 0.955 32 H 0.041 0.959 33 H 0.079 0.921 34 H 0.069 0.931 35 H 0.063 0.937 36 H 0.045 0.955 37 H 0.060 0.940 38 H 0.088 0.912 39 H 0.077 0.923 40 H 0.075 0.925 41 H 0.216 0.784 42 H 0.439 0.561 43 H 0.049 0.951 44 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.983 -23.544 7.473 29.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.194 4.194 3 Si 0.804 3.196 4 H -0.189 1.189 5 H -0.198 1.198 6 H -0.197 1.197 7 C -0.578 4.578 8 H 0.078 0.922 9 C 0.134 3.866 10 O -0.313 6.313 11 C -0.020 4.020 12 C -0.056 4.056 13 N -0.272 5.272 14 C -0.076 4.076 15 C -0.150 4.150 16 C -0.135 4.135 17 C -0.036 4.036 18 H 0.119 0.881 19 C -0.200 4.200 20 N -0.205 5.205 21 C -0.017 4.017 22 C -0.455 4.455 23 C 0.419 3.581 24 O -0.441 6.441 25 O -0.308 6.308 26 S 0.509 5.491 27 C -0.050 4.050 28 H 0.078 0.922 29 H 0.000 1.000 30 H 0.001 0.999 31 H 0.064 0.936 32 H 0.059 0.941 33 H 0.097 0.903 34 H 0.087 0.913 35 H 0.082 0.918 36 H 0.064 0.936 37 H 0.079 0.921 38 H 0.107 0.893 39 H 0.096 0.904 40 H 0.094 0.906 41 H 0.232 0.768 42 H 0.302 0.698 43 H 0.067 0.933 44 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 15.997 -21.804 7.596 28.090 hybrid contribution 0.127 -0.982 -0.374 1.058 sum 16.124 -22.786 7.222 28.833 Atomic orbital electron populations 1.70077 1.07698 1.28439 1.50916 1.25946 0.95957 1.03335 0.94137 0.85162 0.78717 0.77484 0.78204 1.18852 1.19755 1.19703 1.21396 0.94004 0.90854 1.51561 0.92177 1.19777 0.88662 0.85027 0.93102 1.87901 1.34551 1.13761 1.95042 1.22612 0.95469 0.84596 0.99368 1.22010 0.95353 0.95923 0.92279 1.61677 1.07956 1.54464 1.03114 1.22184 0.95962 0.98889 0.90608 1.21555 0.96417 1.00349 0.96703 1.21531 0.95645 1.00570 0.95761 1.20029 0.89199 0.96793 0.97556 0.88137 1.27651 0.99702 0.93982 0.98646 1.66183 1.30000 1.06684 1.17678 1.23084 0.83578 1.02773 0.92302 1.25033 0.96597 0.98488 1.25376 1.18977 0.86813 0.80974 0.71297 1.90974 1.49807 1.54669 1.48677 1.84508 1.37655 1.23782 1.84850 1.84388 0.98811 1.03567 1.62331 1.21900 0.91299 0.95259 0.96590 0.92161 0.99998 0.99945 0.93645 0.94096 0.90283 0.91272 0.91848 0.93644 0.92084 0.89309 0.90419 0.90647 0.76768 0.69775 0.93307 0.91003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.39 13.29 21.45 0.28 -56.10 16 2 C 0.00 0.25 5.46 84.65 0.46 0.71 16 3 Si 0.98 44.83 29.54 68.60 2.03 46.86 16 4 H -0.26 -11.74 7.11 99.48 0.71 -11.04 16 5 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 6 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 7 C -0.54 -32.54 9.43 25.60 0.24 -32.30 16 8 H 0.06 3.61 7.81 -2.91 -0.02 3.59 16 9 C 0.21 11.89 5.69 71.24 0.41 12.30 16 10 O -0.39 -19.28 10.27 -148.98 -1.53 -20.81 16 11 C 0.06 2.08 6.00 71.98 0.43 2.51 16 12 C 0.07 2.04 5.35 86.30 0.46 2.50 16 13 N -0.55 -15.16 4.60 -896.37 -4.13 -19.29 16 14 C 0.05 1.25 5.30 86.32 0.46 1.70 16 15 C -0.11 -2.34 6.09 30.64 0.19 -2.15 16 16 C -0.10 -1.72 5.26 30.67 0.16 -1.56 16 17 C -0.01 -0.27 2.78 -11.49 -0.03 -0.30 16 18 H 0.10 2.13 8.12 -2.38 -0.02 2.11 16 19 C 0.07 1.37 5.90 88.47 0.52 1.89 16 20 N -0.49 -9.06 10.48 -189.53 -1.99 -11.05 16 21 C 0.14 2.18 11.20 84.48 0.95 3.13 16 22 C -0.33 -5.79 6.51 24.08 0.16 -5.63 16 23 C 0.58 9.89 8.30 69.97 0.58 10.47 16 24 O -0.55 -13.04 17.75 19.47 0.35 -12.69 16 25 O -0.49 -4.58 13.23 -57.88 -0.77 -5.35 16 26 S 0.25 4.55 22.99 -56.49 -1.30 3.25 16 27 C 0.08 1.78 4.72 86.33 0.41 2.19 16 28 H 0.27 15.08 8.31 -92.71 -0.77 14.31 16 29 H -0.02 -1.05 8.14 -2.39 -0.02 -1.07 16 30 H -0.02 -1.02 8.14 -2.39 -0.02 -1.04 16 31 H 0.05 1.59 8.14 -2.38 -0.02 1.57 16 32 H 0.04 1.47 6.22 -2.39 -0.01 1.45 16 33 H 0.08 2.27 7.99 -2.39 -0.02 2.25 16 34 H 0.07 1.56 8.12 -2.39 -0.02 1.54 16 35 H 0.06 1.79 6.12 -2.39 -0.01 1.78 16 36 H 0.05 0.96 8.14 -2.38 -0.02 0.94 16 37 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 38 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 39 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 40 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 41 H 0.22 1.97 8.06 -2.91 -0.02 1.95 16 42 H 0.44 0.09 9.11 -74.06 -0.67 -0.59 16 43 H 0.05 1.05 8.14 -2.38 -0.02 1.03 16 44 H 0.07 1.66 8.02 -2.39 -0.02 1.64 16 Total: -1.00 -74.86 382.62 -1.32 -76.18 By element: Atomic # 1 Polarization: 3.20 SS G_CDS: 0.35 Total: 3.54 kcal Atomic # 6 Polarization: -9.92 SS G_CDS: 5.39 Total: -4.53 kcal Atomic # 7 Polarization: -80.61 SS G_CDS: -5.83 Total: -86.44 kcal Atomic # 8 Polarization: -36.90 SS G_CDS: -1.95 Total: -38.85 kcal Atomic # 14 Polarization: 44.83 SS G_CDS: 2.03 Total: 46.86 kcal Atomic # 16 Polarization: 4.55 SS G_CDS: -1.30 Total: 3.25 kcal Total: -74.86 -1.32 -76.18 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601068380.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.832 kcal (2) G-P(sol) polarization free energy of solvation -74.862 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.694 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.178 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.010 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds