Wall clock time and date at job start Tue Mar 31 2020 23:51:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00017 * 2 1 4 4 H 1.48501 * 109.47483 * 89.99568 * 3 2 1 5 5 H 1.48499 * 109.47134 * 210.00082 * 3 2 1 6 6 H 1.48507 * 109.46904 * 329.99905 * 3 2 1 7 7 C 1.37871 * 120.00217 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00140 * 180.02562 * 7 2 1 9 9 C 1.50706 * 120.00102 * 0.02562 * 7 2 1 10 10 O 1.42894 * 109.47263 * 179.97438 * 9 7 2 11 11 C 1.42906 * 114.00137 * 179.97438 * 10 9 7 12 12 C 1.52998 * 109.47212 * 179.97438 * 11 10 9 13 13 N 1.46902 * 109.46748 * 65.00172 * 12 11 10 14 14 C 1.46847 * 111.00262 * 66.04583 * 13 12 11 15 15 C 1.53036 * 109.52491 * 174.15520 * 14 13 12 16 16 C 1.53124 * 109.27394 * 59.17949 * 15 14 13 17 17 C 1.53115 * 109.16019 * 302.34493 * 16 15 14 18 18 H 1.09002 * 109.50420 * 297.67406 * 17 16 15 19 19 C 1.50709 * 109.50294 * 177.59687 * 17 16 15 20 20 N 1.29384 * 124.70445 * 300.02875 * 19 17 16 21 21 C 1.30916 * 117.46535 * 179.97438 * 20 19 17 22 22 C 1.36756 * 113.93159 * 359.97438 * 21 20 19 23 23 C 1.46505 * 126.17567 * 179.97438 * 22 21 20 24 24 O 1.21611 * 119.99622 * 179.97438 * 23 22 21 25 25 O 1.34871 * 120.00070 * 359.97438 * 23 22 21 26 26 S 1.70922 * 124.70383 * 119.72150 * 19 17 16 27 27 C 1.46846 * 111.00251 * 301.83207 * 13 12 11 28 28 H 0.97001 * 119.99646 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.46564 * 300.00328 * 9 7 2 30 30 H 1.09006 * 109.46863 * 59.99666 * 9 7 2 31 31 H 1.09001 * 109.46459 * 300.00527 * 11 10 9 32 32 H 1.09006 * 109.46659 * 59.99689 * 11 10 9 33 33 H 1.08996 * 109.47051 * 184.99803 * 12 11 10 34 34 H 1.08994 * 109.47050 * 304.99783 * 12 11 10 35 35 H 1.08999 * 109.46328 * 294.17643 * 14 13 12 36 36 H 1.08998 * 109.45969 * 54.15297 * 14 13 12 37 37 H 1.09001 * 109.50497 * 179.12038 * 15 14 13 38 38 H 1.08999 * 109.50148 * 299.20152 * 15 14 13 39 39 H 1.08996 * 109.52134 * 62.25121 * 16 15 14 40 40 H 1.09003 * 109.51703 * 182.44200 * 16 15 14 41 41 H 1.08002 * 123.03404 * 179.97438 * 21 20 19 42 42 H 0.96702 * 117.00173 * 179.97438 * 25 23 22 43 43 H 1.09002 * 109.46364 * 305.85760 * 27 13 12 44 44 H 1.09002 * 109.46101 * 65.82545 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 1.4001 5 1 3.5467 1.4402 -0.7000 6 1 1.4466 2.6527 -0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 8 2.1797 -3.5852 0.0005 11 6 1.5652 -4.8754 0.0011 12 6 2.6482 -5.9562 0.0004 13 7 3.4091 -5.8876 1.2551 14 6 2.5641 -6.2405 2.4031 15 6 3.4209 -6.3003 3.6697 16 6 4.0814 -4.9378 3.8979 17 6 4.9167 -4.5718 2.6680 18 1 5.7106 -5.3068 2.5355 19 6 5.5229 -3.2054 2.8599 20 7 4.8457 -2.1181 3.0419 21 6 5.5191 -1.0058 3.1941 22 6 6.8760 -1.1664 3.1364 23 6 7.8787 -0.1069 3.2719 24 8 9.0623 -0.3775 3.2023 25 8 7.4892 1.1685 3.4738 26 16 7.2005 -2.8785 2.8746 27 6 4.0166 -4.5622 1.4305 28 1 -0.4850 -0.8401 -0.0004 29 1 0.6241 -2.5566 0.8903 30 1 0.6247 -2.5571 -0.8897 31 1 0.9453 -4.9821 0.8913 32 1 0.9447 -4.9827 -0.8887 33 1 2.1822 -6.9374 -0.0887 34 1 3.3210 -5.7957 -0.8419 35 1 1.7858 -5.4874 2.5263 36 1 2.1040 -7.2133 2.2298 37 1 2.7907 -6.5469 4.5241 38 1 4.1905 -7.0633 3.5527 39 1 3.3120 -4.1816 4.0538 40 1 4.7269 -4.9883 4.7748 41 1 5.0458 -0.0477 3.3510 42 1 8.1871 1.8327 3.5574 43 1 4.6112 -4.3159 0.5508 44 1 3.2314 -3.8169 1.5582 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601068381.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:51:14 Heat of formation + Delta-G solvation = -119.939217 kcal Electronic energy + Delta-G solvation = -28167.060205 eV Core-core repulsion = 24209.983674 eV Total energy + Delta-G solvation = -3957.076531 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.48956 -40.92810 -40.08618 -38.34908 -37.16649 -35.61476 -34.82263 -32.95115 -30.98349 -30.16400 -28.42926 -27.09022 -25.32873 -24.75195 -24.35529 -23.68542 -22.82562 -21.40101 -20.29370 -19.38484 -19.15937 -18.69732 -17.85037 -17.52318 -17.21941 -16.91700 -16.41741 -16.09948 -15.79283 -15.74518 -15.55768 -15.44442 -15.03384 -14.72987 -14.62718 -14.27974 -14.21466 -13.86051 -13.37197 -13.28259 -13.19879 -12.75134 -12.72870 -12.66061 -12.61821 -12.25352 -12.23403 -12.17475 -11.98337 -11.74206 -11.62938 -11.42025 -10.85633 -10.82955 -10.66415 -10.58529 -10.32355 -10.01509 -9.20017 -8.82143 -6.51416 -1.03586 -0.06377 0.46225 1.12686 1.46321 1.56009 1.74746 1.85751 2.11218 2.45045 2.78161 3.02943 3.03774 3.17398 3.70194 3.82525 3.83734 3.95281 4.08441 4.12475 4.22527 4.28877 4.30466 4.36683 4.44555 4.50253 4.56395 4.64257 4.75060 4.85019 4.88182 4.91997 4.98081 5.03641 5.09737 5.16352 5.32341 5.39184 5.49336 5.67104 5.91701 6.03193 6.15095 6.34298 6.57470 6.61937 6.84018 7.27466 8.58595 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.007176 B = 0.005725 C = 0.003432 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3900.936721 B = 4889.324938 C = 8157.032219 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.026 4.026 3 Si 1.117 2.883 4 H -0.263 1.263 5 H -0.273 1.273 6 H -0.276 1.276 7 C -0.599 4.599 8 H 0.047 0.953 9 C 0.201 3.799 10 O -0.383 6.383 11 C 0.011 3.989 12 C 0.068 3.932 13 N -0.523 5.523 14 C 0.044 3.956 15 C -0.104 4.104 16 C -0.105 4.105 17 C -0.010 4.010 18 H 0.120 0.880 19 C 0.067 3.933 20 N -0.500 5.500 21 C 0.135 3.865 22 C -0.332 4.332 23 C 0.579 3.421 24 O -0.542 6.542 25 O -0.496 6.496 26 S 0.269 5.731 27 C 0.070 3.930 28 H 0.254 0.746 29 H -0.028 1.028 30 H -0.025 1.025 31 H 0.036 0.964 32 H 0.044 0.956 33 H 0.122 0.878 34 H 0.079 0.921 35 H 0.010 0.990 36 H 0.098 0.902 37 H 0.087 0.913 38 H 0.091 0.909 39 H 0.044 0.956 40 H 0.084 0.916 41 H 0.194 0.806 42 H 0.439 0.561 43 H 0.052 0.948 44 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.214 -10.970 9.102 19.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.224 4.224 3 Si 0.937 3.063 4 H -0.188 1.188 5 H -0.198 1.198 6 H -0.201 1.201 7 C -0.637 4.637 8 H 0.065 0.935 9 C 0.125 3.875 10 O -0.302 6.302 11 C -0.067 4.067 12 C -0.061 4.061 13 N -0.246 5.246 14 C -0.084 4.084 15 C -0.142 4.142 16 C -0.144 4.144 17 C -0.032 4.032 18 H 0.138 0.862 19 C -0.206 4.206 20 N -0.214 5.214 21 C -0.026 4.026 22 C -0.455 4.455 23 C 0.423 3.577 24 O -0.434 6.434 25 O -0.310 6.310 26 S 0.530 5.470 27 C -0.059 4.059 28 H 0.063 0.937 29 H -0.010 1.010 30 H -0.007 1.007 31 H 0.055 0.945 32 H 0.063 0.937 33 H 0.140 0.860 34 H 0.098 0.902 35 H 0.028 0.972 36 H 0.116 0.884 37 H 0.106 0.894 38 H 0.110 0.890 39 H 0.063 0.937 40 H 0.103 0.897 41 H 0.211 0.789 42 H 0.302 0.698 43 H 0.071 0.929 44 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 13.999 -10.734 8.913 19.764 hybrid contribution -1.446 0.626 -0.129 1.581 sum 12.552 -10.108 8.784 18.355 Atomic orbital electron populations 1.70899 1.07721 1.29647 1.48578 1.27375 0.96410 1.06238 0.92357 0.82962 0.74074 0.70810 0.78459 1.18844 1.19814 1.20084 1.22056 0.94753 0.91648 1.55221 0.93452 1.19852 0.89265 0.86375 0.91980 1.88017 1.33875 1.13834 1.94524 1.23427 0.98121 0.85576 0.99609 1.22356 0.93735 0.97042 0.92927 1.62209 1.32760 1.27089 1.02564 1.22292 0.94409 1.00598 0.91105 1.21553 0.99829 0.96292 0.96487 1.21588 0.98807 0.98133 0.95903 1.20158 0.98758 0.87183 0.97129 0.86162 1.27968 0.94847 0.99453 0.98342 1.66138 1.39834 0.98571 1.16810 1.22907 0.88481 0.98141 0.93092 1.25089 0.97269 0.98656 1.24466 1.18876 0.85316 0.82040 0.71515 1.90933 1.19084 1.84055 1.49366 1.84562 1.45925 1.17144 1.83405 1.83593 1.05432 0.96277 1.61691 1.22090 0.97619 0.90684 0.95543 0.93693 1.01030 1.00693 0.94531 0.93746 0.86042 0.90229 0.97165 0.88360 0.89428 0.89006 0.93702 0.89721 0.78911 0.69761 0.92906 0.92935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.34 13.65 21.45 0.29 -58.05 16 2 C -0.03 -1.57 5.46 84.65 0.46 -1.11 16 3 Si 1.12 51.55 29.90 68.60 2.05 53.60 16 4 H -0.26 -11.24 7.11 99.48 0.71 -10.53 16 5 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 6 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 7 C -0.60 -36.14 9.43 25.60 0.24 -35.90 16 8 H 0.05 2.91 7.81 -2.91 -0.02 2.89 16 9 C 0.20 11.25 5.00 71.24 0.36 11.61 16 10 O -0.38 -18.22 6.77 -148.98 -1.01 -19.23 16 11 C 0.01 0.40 5.75 71.98 0.41 0.81 16 12 C 0.07 1.82 5.93 86.30 0.51 2.33 16 13 N -0.52 -13.95 4.86 -896.39 -4.35 -18.31 16 14 C 0.04 1.01 5.06 86.33 0.44 1.45 16 15 C -0.10 -1.92 6.09 30.65 0.19 -1.73 16 16 C -0.10 -2.42 5.26 30.67 0.16 -2.26 16 17 C -0.01 -0.25 2.78 -11.49 -0.03 -0.29 16 18 H 0.12 2.44 8.12 -2.39 -0.02 2.42 16 19 C 0.07 1.96 5.90 88.47 0.52 2.48 16 20 N -0.50 -17.57 10.48 -189.53 -1.99 -19.56 16 21 C 0.13 4.24 11.20 84.48 0.95 5.19 16 22 C -0.33 -9.38 6.51 24.08 0.16 -9.22 16 23 C 0.58 15.06 8.30 69.98 0.58 15.64 16 24 O -0.54 -16.07 17.75 19.47 0.35 -15.73 16 25 O -0.50 -9.67 13.23 -57.85 -0.77 -10.44 16 26 S 0.27 6.65 22.99 -56.49 -1.30 5.35 16 27 C 0.07 2.30 3.48 86.32 0.30 2.60 16 28 H 0.25 16.11 7.22 -92.71 -0.67 15.44 16 29 H -0.03 -1.65 8.01 -2.39 -0.02 -1.67 16 30 H -0.02 -1.43 8.01 -2.38 -0.02 -1.45 16 31 H 0.04 1.32 6.46 -2.39 -0.02 1.31 16 32 H 0.04 1.54 8.14 -2.38 -0.02 1.52 16 33 H 0.12 2.37 8.06 -2.39 -0.02 2.35 16 34 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 35 H 0.01 0.30 6.65 -2.39 -0.02 0.28 16 36 H 0.10 1.77 8.06 -2.39 -0.02 1.75 16 37 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 38 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 39 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 40 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 41 H 0.19 5.63 8.06 -2.91 -0.02 5.61 16 42 H 0.44 3.84 9.11 -74.06 -0.67 3.17 16 43 H 0.05 1.90 8.12 -2.39 -0.02 1.88 16 44 H 0.05 2.26 5.58 -2.39 -0.01 2.25 16 Total: -1.00 -77.59 375.24 -1.03 -78.61 By element: Atomic # 1 Polarization: 11.68 SS G_CDS: 0.45 Total: 12.14 kcal Atomic # 6 Polarization: -13.64 SS G_CDS: 5.24 Total: -8.40 kcal Atomic # 7 Polarization: -89.87 SS G_CDS: -6.05 Total: -95.91 kcal Atomic # 8 Polarization: -43.97 SS G_CDS: -1.43 Total: -45.40 kcal Atomic # 14 Polarization: 51.55 SS G_CDS: 2.05 Total: 53.60 kcal Atomic # 16 Polarization: 6.65 SS G_CDS: -1.30 Total: 5.35 kcal Total: -77.59 -1.03 -78.61 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601068381.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.324 kcal (2) G-P(sol) polarization free energy of solvation -77.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.615 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.939 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds