Wall clock time and date at job start Tue Mar 31 2020 23:47:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86793 * 120.00351 * 2 1 4 4 H 1.48504 * 109.47325 * 270.00304 * 3 2 1 5 5 H 1.48498 * 109.47241 * 30.00559 * 3 2 1 6 6 H 1.48504 * 109.47204 * 150.00205 * 3 2 1 7 7 C 1.38797 * 119.99452 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99949 * 179.97438 * 7 2 1 9 9 S 1.76201 * 120.00474 * 359.97438 * 7 2 1 10 10 C 1.80996 * 100.00233 * 180.02562 * 9 7 2 11 11 C 1.53000 * 109.47485 * 179.97438 * 10 9 7 12 12 C 1.52996 * 109.47631 * 179.97438 * 11 10 9 13 13 N 1.46895 * 109.47373 * 180.02562 * 12 11 10 14 14 C 1.46854 * 110.99648 * 65.74825 * 13 12 11 15 15 C 1.53037 * 109.52285 * 185.80147 * 14 13 12 16 16 C 1.53114 * 109.31211 * 300.88400 * 15 14 13 17 17 C 1.50700 * 109.52732 * 177.54197 * 16 15 14 18 18 C 1.41266 * 126.69767 * 274.71414 * 17 16 15 19 19 C 1.36889 * 103.83529 * 179.88641 * 18 17 16 20 20 C 1.47368 * 126.94640 * 180.08280 * 19 18 17 21 21 O 1.21503 * 120.00578 * 0.31365 * 20 19 18 22 22 O 1.34786 * 119.99992 * 180.31670 * 20 19 18 23 23 O 1.34669 * 106.09784 * 0.36297 * 19 18 17 24 24 N 1.20884 * 111.46404 * 359.75312 * 23 19 18 25 25 C 1.53125 * 109.16368 * 57.63311 * 16 15 14 26 26 C 1.46840 * 111.00367 * 190.00264 * 13 12 11 27 27 H 0.97004 * 120.00097 * 359.97438 * 1 2 3 28 28 H 1.09007 * 109.47292 * 59.99541 * 10 9 7 29 29 H 1.09003 * 109.47301 * 300.00137 * 10 9 7 30 30 H 1.09008 * 109.46608 * 59.99383 * 11 10 9 31 31 H 1.09003 * 109.47096 * 300.00426 * 11 10 9 32 32 H 1.09006 * 109.46677 * 60.00228 * 12 11 10 33 33 H 1.08994 * 109.47268 * 300.00313 * 12 11 10 34 34 H 1.09000 * 109.42692 * 65.80880 * 14 13 12 35 35 H 1.09000 * 109.49358 * 305.83873 * 14 13 12 36 36 H 1.09002 * 109.50283 * 180.92217 * 15 14 13 37 37 H 1.09003 * 109.50113 * 60.84405 * 15 14 13 38 38 H 1.09007 * 109.52681 * 297.73305 * 16 15 14 39 39 H 1.07997 * 128.07678 * 0.02562 * 18 17 16 40 40 H 0.96702 * 117.00045 * 180.02562 * 22 20 19 41 41 H 1.09005 * 109.49488 * 62.28510 * 25 16 15 42 42 H 1.08998 * 109.50244 * 182.36576 * 25 16 15 43 43 H 1.09001 * 109.46294 * 54.14190 * 26 13 12 44 44 H 1.09003 * 109.45458 * 294.17243 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4479 2.6526 0.7001 6 1 3.5479 1.4400 0.7000 7 6 2.0101 -1.2021 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 16 1.1291 -2.7280 -0.0005 10 6 2.5156 -3.8915 -0.0005 11 6 1.9790 -5.3244 0.0001 12 6 3.1510 -6.3079 -0.0005 13 7 2.6358 -7.6835 -0.0005 14 6 1.9234 -7.9786 -1.2503 15 6 1.2789 -9.3635 -1.1569 16 6 2.3662 -10.4121 -0.9065 17 6 1.7307 -11.7700 -0.7536 18 6 1.1974 -12.3239 0.4315 19 6 0.7465 -13.5565 0.0427 20 6 0.0908 -14.5678 0.8907 21 8 -0.1030 -14.3401 2.0683 22 8 -0.2939 -15.7455 0.3599 23 8 1.0288 -13.6604 -1.2700 24 7 1.5710 -12.6634 -1.6861 25 6 3.1238 -10.0545 0.3752 26 6 3.7156 -8.6499 0.2370 27 1 -0.4850 0.8401 0.0004 28 1 3.1243 -3.7314 0.8895 29 1 3.1242 -3.7315 -0.8905 30 1 1.3701 -5.4846 -0.8897 31 1 1.3706 -5.4841 0.8903 32 1 3.7602 -6.1477 0.8891 33 1 3.7590 -6.1480 -0.8909 34 1 2.6277 -7.9612 -2.0820 35 1 1.1498 -7.2283 -1.4139 36 1 0.7640 -9.5890 -2.0908 37 1 0.5637 -9.3773 -0.3344 38 1 3.0595 -10.4261 -1.7476 39 1 1.1536 -11.8779 1.4141 40 1 -0.7202 -16.3771 0.9553 41 1 2.4379 -10.0787 1.2220 42 1 3.9266 -10.7740 0.5362 43 1 4.2436 -8.3865 1.1534 44 1 4.4116 -8.6300 -0.6017 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601075495.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:47:39 Heat of formation + Delta-G solvation = -62.996539 kcal Electronic energy + Delta-G solvation = -25864.468902 eV Core-core repulsion = 21909.861590 eV Total energy + Delta-G solvation = -3954.607312 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -46.23600 -41.20716 -40.28218 -37.40598 -36.95125 -34.78257 -34.57585 -33.38687 -32.40335 -31.81975 -28.01414 -27.40951 -26.32616 -25.21977 -24.22262 -23.81178 -22.00187 -21.64830 -20.76151 -19.56028 -19.46066 -18.97048 -18.87335 -17.22267 -17.10219 -16.89114 -16.66908 -16.49881 -16.04851 -15.72404 -15.45616 -15.13692 -14.92246 -14.79647 -14.64029 -14.50439 -14.25658 -13.54686 -13.45689 -13.21380 -13.00227 -12.89209 -12.87558 -12.79602 -12.51426 -12.41204 -12.16993 -12.15590 -12.09821 -11.94515 -11.56076 -11.52556 -11.28211 -11.14237 -11.09334 -10.88533 -10.29861 -9.25412 -8.65474 -8.36801 -6.12834 -0.54778 0.84897 1.23702 1.31814 1.39564 1.49030 1.51123 1.76051 2.19622 2.29151 2.77664 2.92235 2.97410 3.33912 3.42235 3.72140 3.78534 3.86257 3.98080 4.04791 4.14411 4.20292 4.30688 4.34847 4.39024 4.44818 4.50042 4.55734 4.67732 4.71691 4.76190 4.82263 4.83386 4.92916 4.98962 5.12845 5.14616 5.22286 5.28408 5.32281 5.38736 5.40211 6.10689 6.18560 6.20635 6.68327 6.94303 7.05428 8.72566 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.028368 B = 0.001587 C = 0.001558 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 986.786932 B =17635.388396 C =17962.243229 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C 0.015 3.985 3 Si 0.994 3.006 4 H -0.268 1.268 5 H -0.274 1.274 6 H -0.263 1.263 7 C -0.539 4.539 8 H 0.073 0.927 9 S -0.199 6.199 10 C -0.088 4.088 11 C -0.082 4.082 12 C 0.072 3.928 13 N -0.545 5.545 14 C 0.053 3.947 15 C -0.100 4.100 16 C -0.007 4.007 17 C 0.024 3.976 18 C -0.122 4.122 19 C -0.083 4.083 20 C 0.589 3.411 21 O -0.508 6.508 22 O -0.493 6.493 23 O 0.130 5.870 24 N -0.355 5.355 25 C -0.102 4.102 26 C 0.056 3.944 27 H 0.271 0.729 28 H 0.063 0.937 29 H 0.060 0.940 30 H 0.061 0.939 31 H 0.066 0.934 32 H 0.083 0.917 33 H 0.036 0.964 34 H 0.037 0.963 35 H 0.074 0.926 36 H 0.070 0.930 37 H 0.075 0.925 38 H 0.089 0.911 39 H 0.205 0.795 40 H 0.446 0.554 41 H 0.083 0.917 42 H 0.087 0.913 43 H 0.089 0.911 44 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.321 -31.771 0.352 32.215 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.190 4.190 3 Si 0.816 3.184 4 H -0.193 1.193 5 H -0.199 1.199 6 H -0.187 1.187 7 C -0.687 4.687 8 H 0.091 0.909 9 S 0.029 5.971 10 C -0.237 4.237 11 C -0.121 4.121 12 C -0.058 4.058 13 N -0.270 5.270 14 C -0.075 4.075 15 C -0.139 4.139 16 C -0.027 4.027 17 C -0.133 4.133 18 C -0.142 4.142 19 C -0.147 4.147 20 C 0.430 3.570 21 O -0.397 6.397 22 O -0.308 6.308 23 O 0.053 5.947 24 N -0.053 5.053 25 C -0.140 4.140 26 C -0.072 4.072 27 H 0.080 0.920 28 H 0.082 0.918 29 H 0.079 0.921 30 H 0.080 0.920 31 H 0.084 0.916 32 H 0.101 0.899 33 H 0.054 0.946 34 H 0.055 0.945 35 H 0.092 0.908 36 H 0.088 0.912 37 H 0.094 0.906 38 H 0.107 0.893 39 H 0.222 0.778 40 H 0.310 0.690 41 H 0.101 0.899 42 H 0.105 0.895 43 H 0.107 0.893 44 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 4.142 -31.621 -0.492 31.895 hybrid contribution 1.581 1.249 0.317 2.040 sum 5.723 -30.371 -0.175 30.906 Atomic orbital electron populations 1.70158 1.07691 1.28515 1.48021 1.26068 0.96032 1.03118 0.93787 0.85016 0.78196 0.76391 0.78807 1.19315 1.19927 1.18687 1.23053 0.94744 0.92071 1.58802 0.90920 1.84648 1.14207 1.01169 1.97026 1.23166 1.00059 0.97639 1.02853 1.21172 0.98111 0.90233 1.02590 1.21966 0.95439 0.87019 1.01350 1.61880 1.27722 1.02156 1.35206 1.22124 0.98090 0.97132 0.90164 1.21562 0.97241 0.92428 1.02672 1.19698 0.96694 0.85510 1.00754 1.23779 1.01909 0.98565 0.89005 1.23164 0.97205 0.91909 1.01963 1.22936 1.08428 0.97604 0.85694 1.18539 0.74488 0.80439 0.83484 1.91026 1.53126 1.79168 1.16404 1.84582 1.72206 1.26140 1.47841 1.85079 1.55708 1.32078 1.21792 1.73789 1.12133 0.95510 1.23903 1.21643 1.00336 0.95799 0.96272 1.22129 0.91976 0.91438 1.01652 0.91991 0.91814 0.92139 0.92020 0.91564 0.89864 0.94582 0.94507 0.90759 0.91166 0.90640 0.89251 0.77817 0.68966 0.89873 0.89475 0.89297 0.94432 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -55.04 13.22 21.65 0.29 -54.75 16 2 C 0.01 0.85 5.49 84.86 0.47 1.31 16 3 Si 0.99 43.98 29.55 68.60 2.03 46.00 16 4 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 5 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 6 H -0.26 -11.10 7.11 99.48 0.71 -10.39 16 7 C -0.54 -31.26 9.50 67.95 0.65 -30.62 16 8 H 0.07 4.05 7.80 -2.91 -0.02 4.03 16 9 S -0.20 -10.64 21.44 -56.49 -1.21 -11.85 16 10 C -0.09 -3.47 5.67 71.98 0.41 -3.06 16 11 C -0.08 -2.57 5.15 30.59 0.16 -2.41 16 12 C 0.07 1.70 4.96 86.30 0.43 2.13 16 13 N -0.54 -11.11 4.66 -896.38 -4.17 -15.28 16 14 C 0.05 1.05 5.29 86.32 0.46 1.50 16 15 C -0.10 -1.69 5.36 30.64 0.16 -1.52 16 16 C -0.01 -0.10 2.72 -11.46 -0.03 -0.14 16 17 C 0.02 0.39 6.21 43.56 0.27 0.66 16 18 C -0.12 -1.68 10.11 22.70 0.23 -1.45 16 19 C -0.08 -1.22 7.37 24.36 0.18 -1.04 16 20 C 0.59 7.52 8.33 70.23 0.59 8.10 16 21 O -0.51 -8.89 17.70 19.82 0.35 -8.54 16 22 O -0.49 -3.42 13.44 -56.27 -0.76 -4.18 16 23 O 0.13 2.26 11.23 65.56 0.74 3.00 16 24 N -0.36 -6.79 12.04 -48.84 -0.59 -7.38 16 25 C -0.10 -1.26 5.03 30.65 0.15 -1.11 16 26 C 0.06 0.84 5.46 86.33 0.47 1.32 16 27 H 0.27 15.24 8.31 -92.71 -0.77 14.47 16 28 H 0.06 2.47 8.14 -2.39 -0.02 2.45 16 29 H 0.06 2.35 8.14 -2.39 -0.02 2.34 16 30 H 0.06 1.97 6.43 -2.38 -0.02 1.96 16 31 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 32 H 0.08 1.86 7.99 -2.38 -0.02 1.84 16 33 H 0.04 0.84 8.12 -2.39 -0.02 0.82 16 34 H 0.04 0.71 8.14 -2.39 -0.02 0.69 16 35 H 0.07 1.69 6.21 -2.39 -0.01 1.68 16 36 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 37 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 38 H 0.09 1.34 8.14 -2.38 -0.02 1.32 16 39 H 0.20 2.08 7.58 -2.91 -0.02 2.06 16 40 H 0.45 -1.49 9.11 -74.06 -0.67 -2.16 16 41 H 0.08 1.01 7.36 -2.38 -0.02 0.99 16 42 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 43 H 0.09 1.23 8.02 -2.39 -0.02 1.21 16 44 H 0.04 0.56 8.14 -2.39 -0.02 0.54 16 Total: -1.00 -73.26 381.48 1.61 -71.65 By element: Atomic # 1 Polarization: 7.29 SS G_CDS: 0.35 Total: 7.64 kcal Atomic # 6 Polarization: -30.91 SS G_CDS: 4.59 Total: -26.32 kcal Atomic # 7 Polarization: -72.93 SS G_CDS: -4.47 Total: -77.41 kcal Atomic # 8 Polarization: -10.05 SS G_CDS: 0.33 Total: -9.72 kcal Atomic # 14 Polarization: 43.98 SS G_CDS: 2.03 Total: 46.00 kcal Atomic # 16 Polarization: -10.64 SS G_CDS: -1.21 Total: -11.85 kcal Total: -73.26 1.61 -71.65 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601075495.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.656 kcal (2) G-P(sol) polarization free energy of solvation -73.261 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.605 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.608 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.653 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.997 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds