Wall clock time and date at job start Tue Mar 31 2020 23:52:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30557 * 125.71510 * 2 1 4 4 N 1.40105 * 109.46540 * 179.97438 * 3 2 1 5 5 C 1.46501 * 125.98145 * 180.02562 * 4 3 2 6 6 C 1.36375 * 108.04681 * 359.97438 * 4 3 2 7 7 C 1.40190 * 106.81032 * 0.02562 * 6 4 3 8 8 C 1.46120 * 118.75037 * 179.97438 * 7 6 4 9 9 N 1.30272 * 119.56057 * 359.77028 * 8 7 6 10 10 N 1.39674 * 121.61503 * 0.49038 * 9 8 7 11 11 C 1.46498 * 119.19691 * 179.75573 * 10 9 8 12 12 C 1.50701 * 109.47235 * 269.72777 * 11 10 9 13 13 C 1.38305 * 119.92910 * 270.25475 * 12 11 10 14 14 C 1.38104 * 120.06272 * 180.25358 * 13 12 11 15 15 C 1.38874 * 119.93265 * 359.47314 * 14 13 12 16 16 O 1.35749 * 120.06890 * 180.29770 * 15 14 13 17 17 C 1.34834 * 117.00013 * 354.46142 * 16 15 14 18 18 H 1.07996 * 120.00021 * 5.05939 * 17 16 15 19 19 C 1.38654 * 119.99707 * 185.05824 * 17 16 15 20 20 N 1.31550 * 120.00182 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 119.99577 * 180.02562 * 19 17 16 22 22 H 1.48499 * 109.47369 * 59.99976 * 21 19 17 23 23 H 1.48494 * 109.47142 * 180.02562 * 21 19 17 24 24 H 1.48500 * 109.47275 * 300.00018 * 21 19 17 25 25 C 1.38882 * 119.86301 * 0.27303 * 15 14 13 26 26 C 1.38094 * 119.92975 * 0.02562 * 25 15 14 27 27 C 1.34746 * 121.60253 * 359.48071 * 10 9 8 28 28 O 1.21965 * 120.16204 * 180.23254 * 27 10 9 29 29 H 1.08998 * 109.47753 * 270.04412 * 1 2 3 30 30 H 1.09001 * 109.46847 * 30.05332 * 1 2 3 31 31 H 1.09006 * 109.46841 * 150.04559 * 1 2 3 32 32 H 1.09001 * 109.47378 * 269.96164 * 5 4 3 33 33 H 1.09004 * 109.46649 * 29.95762 * 5 4 3 34 34 H 1.08997 * 109.47424 * 149.95783 * 5 4 3 35 35 H 1.08001 * 120.21984 * 179.97438 * 8 7 6 36 36 H 1.09006 * 109.47116 * 149.72926 * 11 10 9 37 37 H 1.08998 * 109.47244 * 29.73081 * 11 10 9 38 38 H 1.07990 * 119.96792 * 0.02562 * 13 12 11 39 39 H 1.08000 * 120.02708 * 179.74272 * 14 13 12 40 40 H 0.97006 * 119.99724 * 179.97438 * 20 19 17 41 41 H 1.08005 * 120.03486 * 180.02562 * 25 15 14 42 42 H 1.08006 * 119.96521 * 180.02562 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2691 1.0600 0.0000 4 7 3.6142 0.6680 0.0006 5 6 4.7723 1.5653 0.0013 6 6 3.6570 -0.6951 0.0015 7 6 2.3284 -1.1424 0.0009 8 6 2.0710 -2.5808 0.0012 9 7 3.0733 -3.4130 -0.0026 10 7 4.3964 -2.9656 0.0032 11 6 5.4830 -3.9482 0.0040 12 6 5.8553 -4.2844 1.4251 13 6 6.8260 -3.5460 2.0773 14 6 7.1730 -3.8550 3.3778 15 6 6.5384 -4.9014 4.0344 16 8 6.8731 -5.2037 5.3147 17 6 7.9071 -4.5264 5.8534 18 1 8.3754 -3.7261 5.2998 19 6 8.3692 -4.8575 7.1180 20 7 7.7984 -5.8321 7.7926 21 14 9.8012 -3.9187 7.8645 22 1 9.4459 -2.4813 7.9773 23 1 10.1002 -4.4625 9.2135 24 1 10.9966 -4.0663 6.9958 25 6 5.5604 -5.6377 3.3784 26 6 5.2222 -5.3277 2.0759 27 6 4.6978 -1.6523 0.0027 28 8 5.8626 -1.2908 0.0037 29 1 -0.3634 0.0008 1.0276 30 1 -0.3633 0.8895 -0.5147 31 1 -0.3633 -0.8905 -0.5132 32 1 5.0605 1.7875 -1.0262 33 1 4.5138 2.4915 0.5145 34 1 5.6041 1.0845 0.5161 35 1 1.0567 -2.9515 0.0011 36 1 6.3496 -3.5320 -0.5098 37 1 5.1558 -4.8523 -0.5094 38 1 7.3156 -2.7293 1.5679 39 1 7.9340 -3.2806 3.8852 40 1 8.1220 -6.0639 8.6772 41 1 5.0649 -6.4518 3.8865 42 1 4.4614 -5.8996 1.5654 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001652879362.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:52:37 Heat of formation + Delta-G solvation = 93.469174 kcal Electronic energy + Delta-G solvation = -28442.468993 eV Core-core repulsion = 24391.495344 eV Total energy + Delta-G solvation = -4050.973649 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.132 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.11899 -39.88989 -38.91214 -37.25830 -36.62739 -34.28820 -33.47623 -32.26966 -30.83765 -30.18603 -29.86516 -29.69508 -26.47736 -25.96047 -25.13579 -23.66021 -23.21190 -21.93962 -20.66756 -20.17205 -18.44150 -18.11509 -17.97411 -17.15058 -16.84238 -16.50497 -15.44473 -15.41123 -15.16589 -14.63059 -14.53973 -14.17994 -13.96728 -13.93225 -13.62561 -13.54671 -13.44498 -12.92886 -12.85716 -12.68468 -12.63998 -12.63490 -12.35315 -11.95822 -11.66811 -11.44326 -11.34498 -11.04590 -10.96216 -10.76560 -10.65539 -10.45550 -10.03612 -9.75914 -9.54436 -9.35182 -8.86467 -8.30327 -8.18113 -7.25744 -6.48567 -4.07096 0.50470 1.29276 1.62863 2.02216 2.21736 2.23926 2.59785 3.11722 3.13181 3.15476 3.25705 3.72932 3.94428 3.94529 4.27304 4.40004 4.55823 4.76511 4.85358 4.90848 5.06401 5.11540 5.22969 5.23483 5.24475 5.35018 5.36261 5.37610 5.50893 5.65577 5.77339 5.85234 5.97605 5.99407 6.14725 6.21583 6.30698 6.42449 6.68623 6.89940 7.03009 7.06147 7.22549 7.36337 7.42198 7.58867 7.80570 7.90454 7.96830 8.96908 9.65943 10.69102 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.014480 B = 0.002707 C = 0.002567 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1933.237601 B =10341.098475 C =10904.933511 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.106 3.894 3 N -0.259 5.259 4 N -0.325 5.325 5 C 0.097 3.903 6 C 0.052 3.948 7 C -0.204 4.204 8 C 0.147 3.853 9 N -0.240 5.240 10 N -0.402 5.402 11 C 0.188 3.812 12 C -0.219 4.219 13 C -0.045 4.045 14 C -0.241 4.241 15 C 0.163 3.837 16 O -0.174 6.174 17 C -0.393 4.393 18 H 0.092 0.908 19 C 0.040 3.960 20 N -0.861 5.861 21 Si 0.941 3.059 22 H -0.270 1.270 23 H -0.277 1.277 24 H -0.269 1.269 25 C -0.199 4.199 26 C -0.046 4.046 27 C 0.543 3.457 28 O -0.531 6.531 29 H 0.086 0.914 30 H 0.079 0.921 31 H 0.085 0.915 32 H 0.082 0.918 33 H 0.095 0.905 34 H 0.104 0.896 35 H 0.195 0.805 36 H 0.097 0.903 37 H 0.096 0.904 38 H 0.113 0.887 39 H 0.126 0.874 40 H 0.271 0.729 41 H 0.118 0.882 42 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.645 10.155 -17.746 24.040 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.062 4.062 3 N -0.083 5.083 4 N -0.107 5.107 5 C -0.044 4.044 6 C -0.083 4.083 7 C -0.220 4.220 8 C -0.058 4.058 9 N -0.049 5.049 10 N -0.221 5.221 11 C 0.070 3.930 12 C -0.221 4.221 13 C -0.063 4.063 14 C -0.260 4.260 15 C 0.108 3.892 16 O -0.077 6.077 17 C -0.469 4.469 18 H 0.109 0.891 19 C -0.164 4.164 20 N -0.495 5.495 21 Si 0.766 3.234 22 H -0.195 1.195 23 H -0.202 1.202 24 H -0.194 1.194 25 C -0.219 4.219 26 C -0.065 4.065 27 C 0.333 3.667 28 O -0.407 6.407 29 H 0.104 0.896 30 H 0.098 0.902 31 H 0.104 0.896 32 H 0.100 0.900 33 H 0.113 0.887 34 H 0.122 0.878 35 H 0.211 0.789 36 H 0.115 0.885 37 H 0.114 0.886 38 H 0.131 0.869 39 H 0.144 0.856 40 H 0.081 0.919 41 H 0.136 0.864 42 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -11.488 10.491 -17.350 23.304 hybrid contribution 0.727 0.705 0.542 1.149 sum -10.761 11.196 -16.808 22.884 Atomic orbital electron populations 1.20305 0.85135 1.04081 1.03890 1.22238 0.97300 0.88438 0.98233 1.77168 0.85703 1.22590 1.22821 1.48482 1.05729 1.02449 1.53995 1.22184 0.84155 0.93756 1.04267 1.20248 0.96133 0.86484 1.05418 1.20506 0.91625 0.95209 1.14695 1.24376 0.98469 0.86851 0.96121 1.74979 0.88451 1.27222 1.14284 1.49508 1.03794 1.04738 1.64038 1.20406 0.86521 0.90558 0.95556 1.19338 1.04191 1.02313 0.96308 1.20768 0.95028 0.96735 0.93811 1.21152 1.06296 1.02301 0.96241 1.19451 0.92570 0.92010 0.85177 1.83973 1.46167 1.57337 1.20207 1.21310 1.09188 1.15860 1.00542 0.89057 1.25299 0.98767 0.96755 0.95603 1.70028 1.39865 1.27152 1.12498 0.85777 0.80032 0.79210 0.78419 1.19483 1.20195 1.19411 1.20196 1.02730 1.03658 0.95271 1.20521 0.96956 0.95605 0.93408 1.16214 0.88038 0.82620 0.79833 1.90925 1.19736 1.79159 1.50929 0.89585 0.90235 0.89604 0.89971 0.88657 0.87774 0.78863 0.88465 0.88623 0.86914 0.85585 0.91884 0.86407 0.86695 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.41 10.44 36.01 0.38 -0.03 16 2 C 0.11 1.08 7.22 -82.20 -0.59 0.48 16 3 N -0.26 -3.14 12.48 33.79 0.42 -2.72 16 4 N -0.32 -4.16 4.05 -65.22 -0.26 -4.43 16 5 C 0.10 0.94 11.22 59.85 0.67 1.61 16 6 C 0.05 0.73 6.92 -83.91 -0.58 0.15 16 7 C -0.20 -2.38 6.34 -105.07 -0.67 -3.04 16 8 C 0.15 1.46 11.63 -15.05 -0.18 1.29 16 9 N -0.24 -3.07 11.46 31.92 0.37 -2.70 16 10 N -0.40 -5.94 3.49 -64.44 -0.22 -6.17 16 11 C 0.19 2.73 5.76 -5.19 -0.03 2.70 16 12 C -0.22 -3.90 5.46 -104.57 -0.57 -4.47 16 13 C -0.04 -0.88 9.66 -39.61 -0.38 -1.26 16 14 C -0.24 -5.46 9.17 -39.40 -0.36 -5.82 16 15 C 0.16 4.01 6.65 -39.11 -0.26 3.75 16 16 O -0.17 -5.04 9.76 0.04 0.00 -5.03 16 17 C -0.39 -11.13 9.49 30.89 0.29 -10.83 16 18 H 0.09 2.41 5.20 -52.49 -0.27 2.14 16 19 C 0.04 1.12 5.49 -17.52 -0.10 1.02 16 20 N -0.86 -25.34 13.67 55.48 0.76 -24.59 16 21 Si 0.94 20.72 29.55 -169.99 -5.02 15.69 16 22 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 23 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 24 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 25 C -0.20 -4.27 9.99 -39.40 -0.39 -4.66 16 26 C -0.05 -0.83 9.69 -39.61 -0.38 -1.22 16 27 C 0.54 8.56 7.50 -15.07 -0.11 8.44 16 28 O -0.53 -9.20 14.69 4.95 0.07 -9.12 16 29 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.09 0.27 8.14 -51.93 -0.42 -0.15 16 32 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.10 1.11 7.12 -51.93 -0.37 0.74 16 35 H 0.19 0.99 8.06 -52.49 -0.42 0.57 16 36 H 0.10 1.37 7.31 -51.93 -0.38 0.99 16 37 H 0.10 1.16 8.08 -51.93 -0.42 0.74 16 38 H 0.11 2.12 7.44 -52.49 -0.39 1.73 16 39 H 0.13 2.88 5.64 -52.49 -0.30 2.58 16 40 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 41 H 0.12 2.42 8.06 -52.48 -0.42 2.00 16 42 H 0.12 1.75 8.06 -52.48 -0.42 1.32 16 LS Contribution 367.11 15.07 5.53 5.53 Total: -1.00 -35.28 367.11 -6.27 -41.55 By element: Atomic # 1 Polarization: 8.53 SS G_CDS: -4.65 Total: 3.88 kcal Atomic # 6 Polarization: -8.63 SS G_CDS: -3.27 Total: -11.90 kcal Atomic # 7 Polarization: -41.65 SS G_CDS: 1.06 Total: -40.60 kcal Atomic # 8 Polarization: -14.23 SS G_CDS: 0.07 Total: -14.16 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.02 Total: 15.69 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -35.28 -6.27 -41.55 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001652879362.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.018 kcal (2) G-P(sol) polarization free energy of solvation -35.275 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.743 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.273 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.549 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.469 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds