Wall clock time and date at job start Tue Mar 31 2020 23:52:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30557 * 125.71510 * 2 1 4 4 N 1.40105 * 109.46540 * 179.97438 * 3 2 1 5 5 C 1.46501 * 125.98145 * 180.02562 * 4 3 2 6 6 C 1.36375 * 108.04681 * 359.97438 * 4 3 2 7 7 C 1.40190 * 106.81032 * 0.02562 * 6 4 3 8 8 C 1.46120 * 118.75037 * 179.97438 * 7 6 4 9 9 N 1.30272 * 119.56057 * 359.77028 * 8 7 6 10 10 N 1.39674 * 121.61503 * 0.49038 * 9 8 7 11 11 C 1.46498 * 119.19691 * 179.75573 * 10 9 8 12 12 C 1.50701 * 109.47235 * 269.72777 * 11 10 9 13 13 C 1.38305 * 119.92910 * 270.25475 * 12 11 10 14 14 C 1.38104 * 120.06272 * 180.25358 * 13 12 11 15 15 C 1.38874 * 119.93265 * 359.47314 * 14 13 12 16 16 O 1.35749 * 120.06890 * 180.29770 * 15 14 13 17 17 C 1.34834 * 117.00013 * 354.46142 * 16 15 14 18 18 H 1.07996 * 120.00021 * 5.05939 * 17 16 15 19 19 C 1.38654 * 119.99707 * 185.05824 * 17 16 15 20 20 N 1.31550 * 120.00182 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 119.99577 * 180.02562 * 19 17 16 22 22 H 1.48499 * 109.47369 * 59.99976 * 21 19 17 23 23 H 1.48494 * 109.47142 * 180.02562 * 21 19 17 24 24 H 1.48500 * 109.47275 * 300.00018 * 21 19 17 25 25 C 1.38882 * 119.86301 * 0.27303 * 15 14 13 26 26 C 1.38094 * 119.92975 * 0.02562 * 25 15 14 27 27 C 1.34746 * 121.60253 * 359.48071 * 10 9 8 28 28 O 1.21965 * 120.16204 * 180.23254 * 27 10 9 29 29 H 1.08998 * 109.47753 * 270.04412 * 1 2 3 30 30 H 1.09001 * 109.46847 * 30.05332 * 1 2 3 31 31 H 1.09006 * 109.46841 * 150.04559 * 1 2 3 32 32 H 1.09001 * 109.47378 * 269.96164 * 5 4 3 33 33 H 1.09004 * 109.46649 * 29.95762 * 5 4 3 34 34 H 1.08997 * 109.47424 * 149.95783 * 5 4 3 35 35 H 1.08001 * 120.21984 * 179.97438 * 8 7 6 36 36 H 1.09006 * 109.47116 * 149.72926 * 11 10 9 37 37 H 1.08998 * 109.47244 * 29.73081 * 11 10 9 38 38 H 1.07990 * 119.96792 * 0.02562 * 13 12 11 39 39 H 1.08000 * 120.02708 * 179.74272 * 14 13 12 40 40 H 0.97006 * 119.99724 * 179.97438 * 20 19 17 41 41 H 1.08005 * 120.03486 * 180.02562 * 25 15 14 42 42 H 1.08006 * 119.96521 * 180.02562 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2691 1.0600 0.0000 4 7 3.6142 0.6680 0.0006 5 6 4.7723 1.5653 0.0013 6 6 3.6570 -0.6951 0.0015 7 6 2.3284 -1.1424 0.0009 8 6 2.0710 -2.5808 0.0012 9 7 3.0733 -3.4130 -0.0026 10 7 4.3964 -2.9656 0.0032 11 6 5.4830 -3.9482 0.0040 12 6 5.8553 -4.2844 1.4251 13 6 6.8260 -3.5460 2.0773 14 6 7.1730 -3.8550 3.3778 15 6 6.5384 -4.9014 4.0344 16 8 6.8731 -5.2037 5.3147 17 6 7.9071 -4.5264 5.8534 18 1 8.3754 -3.7261 5.2998 19 6 8.3692 -4.8575 7.1180 20 7 7.7984 -5.8321 7.7926 21 14 9.8012 -3.9187 7.8645 22 1 9.4459 -2.4813 7.9773 23 1 10.1002 -4.4625 9.2135 24 1 10.9966 -4.0663 6.9958 25 6 5.5604 -5.6377 3.3784 26 6 5.2222 -5.3277 2.0759 27 6 4.6978 -1.6523 0.0027 28 8 5.8626 -1.2908 0.0037 29 1 -0.3634 0.0008 1.0276 30 1 -0.3633 0.8895 -0.5147 31 1 -0.3633 -0.8905 -0.5132 32 1 5.0605 1.7875 -1.0262 33 1 4.5138 2.4915 0.5145 34 1 5.6041 1.0845 0.5161 35 1 1.0567 -2.9515 0.0011 36 1 6.3496 -3.5320 -0.5098 37 1 5.1558 -4.8523 -0.5094 38 1 7.3156 -2.7293 1.5679 39 1 7.9340 -3.2806 3.8852 40 1 8.1220 -6.0639 8.6772 41 1 5.0649 -6.4518 3.8865 42 1 4.4614 -5.8996 1.5654 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001652879362.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:52:36 Heat of formation + Delta-G solvation = 69.551457 kcal Electronic energy + Delta-G solvation = -28443.506143 eV Core-core repulsion = 24391.495344 eV Total energy + Delta-G solvation = -4052.010799 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.132 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -43.04628 -41.11241 -40.54317 -38.50600 -38.14579 -35.11918 -34.75390 -34.14673 -31.87277 -31.75495 -31.25054 -30.40203 -27.93410 -27.05486 -26.68795 -24.62909 -24.32324 -23.62338 -22.21468 -21.07537 -19.91512 -19.37449 -19.11859 -18.85243 -17.92543 -17.61465 -16.65778 -16.44142 -16.38799 -16.23080 -16.17690 -15.64773 -15.53668 -15.06877 -14.63662 -14.57425 -14.51436 -14.29883 -14.24827 -13.72280 -13.64591 -13.63027 -13.24237 -13.10980 -13.06397 -13.01367 -12.60737 -12.47372 -12.42726 -12.29645 -12.17525 -11.84960 -11.25567 -11.10220 -10.84042 -10.64151 -10.57376 -9.84905 -9.30933 -9.04593 -8.52423 -6.21014 -0.49693 0.38526 0.45765 0.54413 0.91074 1.31076 1.31924 1.37137 1.45600 1.47314 2.13649 2.27485 2.77607 2.81409 3.11170 3.17563 3.43908 3.44679 3.55835 3.92955 3.94896 4.06600 4.11160 4.16572 4.18579 4.27924 4.44991 4.48415 4.55495 4.63982 4.73040 4.88115 4.90094 4.91213 4.99793 5.01823 5.09646 5.18510 5.23798 5.37400 5.49500 5.51519 5.64605 5.71825 5.97038 6.12820 6.20486 6.51791 6.90808 6.91831 7.70034 8.70123 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.014480 B = 0.002707 C = 0.002567 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1933.237601 B =10341.098475 C =10904.933511 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.114 3.886 3 N -0.278 5.278 4 N -0.335 5.335 5 C 0.093 3.907 6 C 0.017 3.983 7 C -0.205 4.205 8 C 0.170 3.830 9 N -0.263 5.263 10 N -0.409 5.409 11 C 0.190 3.810 12 C -0.192 4.192 13 C -0.049 4.049 14 C -0.251 4.251 15 C 0.125 3.875 16 O -0.226 6.226 17 C -0.418 4.418 18 H 0.097 0.903 19 C -0.018 4.018 20 N -0.916 5.916 21 Si 1.017 2.983 22 H -0.260 1.260 23 H -0.267 1.267 24 H -0.258 1.258 25 C -0.205 4.205 26 C -0.032 4.032 27 C 0.533 3.467 28 O -0.562 6.562 29 H 0.098 0.902 30 H 0.086 0.914 31 H 0.117 0.883 32 H 0.096 0.904 33 H 0.113 0.887 34 H 0.087 0.913 35 H 0.249 0.751 36 H 0.099 0.901 37 H 0.129 0.871 38 H 0.121 0.879 39 H 0.114 0.886 40 H 0.275 0.725 41 H 0.121 0.879 42 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.200 10.849 -20.203 27.512 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.053 4.053 3 N -0.102 5.102 4 N -0.117 5.117 5 C -0.047 4.047 6 C -0.117 4.117 7 C -0.221 4.221 8 C -0.034 4.034 9 N -0.072 5.072 10 N -0.227 5.227 11 C 0.071 3.929 12 C -0.194 4.194 13 C -0.068 4.068 14 C -0.271 4.271 15 C 0.074 3.926 16 O -0.132 6.132 17 C -0.494 4.494 18 H 0.114 0.886 19 C -0.216 4.216 20 N -0.554 5.554 21 Si 0.835 3.165 22 H -0.184 1.184 23 H -0.191 1.191 24 H -0.182 1.182 25 C -0.225 4.225 26 C -0.051 4.051 27 C 0.324 3.676 28 O -0.441 6.441 29 H 0.117 0.883 30 H 0.105 0.895 31 H 0.135 0.865 32 H 0.114 0.886 33 H 0.132 0.868 34 H 0.106 0.894 35 H 0.264 0.736 36 H 0.117 0.883 37 H 0.147 0.853 38 H 0.139 0.861 39 H 0.131 0.869 40 H 0.084 0.916 41 H 0.139 0.861 42 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -14.078 11.200 -19.868 26.802 hybrid contribution 1.218 0.593 0.936 1.646 sum -12.860 11.793 -18.933 25.747 Atomic orbital electron populations 1.20581 0.81556 1.06056 1.05229 1.23004 0.99196 0.87169 0.95973 1.77172 0.85588 1.23735 1.23696 1.48774 1.06524 1.02384 1.54062 1.22302 0.83279 0.93884 1.05223 1.20378 0.96923 0.87137 1.07293 1.20868 0.90793 0.96466 1.13979 1.25297 0.99948 0.85783 0.92334 1.75060 0.87643 1.27532 1.16917 1.49380 1.04939 1.04169 1.64171 1.20424 0.87360 0.92116 0.93016 1.19815 1.01516 1.00268 0.97755 1.20931 0.95782 0.97324 0.92741 1.21191 1.06316 1.02096 0.97453 1.19972 0.94259 0.93577 0.84808 1.83938 1.47632 1.59210 1.22406 1.21748 1.09833 1.16483 1.01372 0.88571 1.26559 1.01690 0.97735 0.95651 1.70161 1.42324 1.29622 1.13247 0.84685 0.76153 0.77893 0.77723 1.18424 1.19102 1.18219 1.20507 1.01909 1.03434 0.96609 1.20931 0.96943 0.95328 0.91857 1.16541 0.88107 0.83343 0.79606 1.90895 1.20892 1.79710 1.52641 0.88330 0.89492 0.86496 0.88590 0.86831 0.89398 0.73550 0.88269 0.85296 0.86057 0.86857 0.91616 0.86057 0.82414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.48 10.44 71.24 0.74 0.26 16 2 C 0.11 1.96 7.22 43.35 0.31 2.27 16 3 N -0.28 -6.23 12.48 -47.00 -0.59 -6.81 16 4 N -0.34 -8.33 4.05 -360.24 -1.46 -9.79 16 5 C 0.09 1.79 11.22 127.77 1.43 3.23 16 6 C 0.02 0.46 6.92 39.69 0.27 0.73 16 7 C -0.20 -4.13 6.34 -20.16 -0.13 -4.26 16 8 C 0.17 2.62 11.63 86.97 1.01 3.63 16 9 N -0.26 -5.69 11.46 -52.93 -0.61 -6.29 16 10 N -0.41 -11.11 3.49 -475.91 -1.66 -12.77 16 11 C 0.19 4.99 5.76 85.63 0.49 5.48 16 12 C -0.19 -6.45 5.46 -19.83 -0.11 -6.55 16 13 C -0.05 -1.94 9.66 22.25 0.22 -1.73 16 14 C -0.25 -11.87 9.17 22.39 0.21 -11.67 16 15 C 0.12 6.44 6.65 22.58 0.15 6.59 16 16 O -0.23 -13.90 9.76 -22.77 -0.22 -14.12 16 17 C -0.42 -25.10 9.49 67.92 0.64 -24.45 16 18 H 0.10 5.40 5.20 -2.91 -0.02 5.38 16 19 C -0.02 -1.05 5.49 84.83 0.47 -0.58 16 20 N -0.92 -56.67 13.67 21.61 0.30 -56.37 16 21 Si 1.02 43.81 29.55 68.60 2.03 45.84 16 22 H -0.26 -10.63 7.11 99.48 0.71 -9.92 16 23 H -0.27 -10.89 7.11 99.48 0.71 -10.19 16 24 H -0.26 -10.50 7.11 99.48 0.71 -9.79 16 25 C -0.21 -8.83 9.99 22.39 0.22 -8.60 16 26 C -0.03 -1.09 9.69 22.25 0.22 -0.87 16 27 C 0.53 16.31 7.50 85.03 0.64 16.95 16 28 O -0.56 -19.58 14.69 -5.20 -0.08 -19.66 16 29 H 0.10 0.46 8.14 -2.39 -0.02 0.44 16 30 H 0.09 0.48 8.14 -2.39 -0.02 0.46 16 31 H 0.12 0.04 8.14 -2.38 -0.02 0.02 16 32 H 0.10 1.52 8.14 -2.39 -0.02 1.50 16 33 H 0.11 1.68 8.14 -2.38 -0.02 1.66 16 34 H 0.09 1.97 7.12 -2.39 -0.02 1.96 16 35 H 0.25 0.86 8.06 -2.91 -0.02 0.84 16 36 H 0.10 2.60 7.31 -2.38 -0.02 2.59 16 37 H 0.13 2.56 8.08 -2.39 -0.02 2.54 16 38 H 0.12 4.59 7.44 -2.92 -0.02 4.57 16 39 H 0.11 5.52 5.64 -2.91 -0.02 5.51 16 40 H 0.27 15.52 8.31 -92.70 -0.77 14.75 16 41 H 0.12 5.04 8.06 -2.91 -0.02 5.02 16 42 H 0.16 4.04 8.06 -2.91 -0.02 4.02 16 Total: -1.00 -83.77 367.11 5.58 -78.19 By element: Atomic # 1 Polarization: 20.28 SS G_CDS: 1.08 Total: 21.36 kcal Atomic # 6 Polarization: -26.37 SS G_CDS: 6.79 Total: -19.57 kcal Atomic # 7 Polarization: -88.02 SS G_CDS: -4.02 Total: -92.04 kcal Atomic # 8 Polarization: -33.48 SS G_CDS: -0.30 Total: -33.78 kcal Atomic # 14 Polarization: 43.81 SS G_CDS: 2.03 Total: 45.84 kcal Total: -83.77 5.58 -78.19 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001652879362.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.746 kcal (2) G-P(sol) polarization free energy of solvation -83.774 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.973 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.579 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.195 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds