Wall clock time and date at job start Tue Mar 31 2020 23:27:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30829 * 1 3 3 Si 1.86800 * 119.99703 * 2 1 4 4 H 1.48498 * 109.47269 * 274.96118 * 3 2 1 5 5 H 1.48496 * 109.47468 * 34.96686 * 3 2 1 6 6 H 1.48506 * 109.46986 * 154.96416 * 3 2 1 7 7 C 1.39926 * 120.00132 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99929 * 196.79064 * 7 2 1 9 9 C 1.41413 * 119.99942 * 16.78638 * 7 2 1 10 10 C 1.40781 * 120.20784 * 25.17056 * 9 7 2 11 11 C 1.37637 * 119.88361 * 179.97438 * 10 9 7 12 12 C 1.38536 * 120.32052 * 0.02562 * 11 10 9 13 13 C 1.39249 * 120.42893 * 359.96230 * 12 11 10 14 14 N 1.39951 * 119.94642 * 179.97438 * 13 12 11 15 15 C 1.34772 * 120.00186 * 145.77290 * 14 13 12 16 16 O 1.21595 * 120.00004 * 354.84079 * 15 14 13 17 17 N 1.34782 * 120.00353 * 174.83470 * 15 14 13 18 18 N 1.40103 * 119.99640 * 0.02562 * 17 15 14 19 19 C 1.34772 * 119.99761 * 179.97438 * 18 17 15 20 20 O 1.21278 * 120.00167 * 0.02562 * 19 18 17 21 21 C 1.50694 * 119.99871 * 180.02562 * 19 18 17 22 22 C 1.50704 * 109.47185 * 180.02562 * 21 19 18 23 23 C 1.38231 * 119.61860 * 125.01995 * 22 21 19 24 24 C 1.38628 * 119.15936 * 179.74634 * 23 22 21 25 25 C 1.38674 * 118.42023 * 0.47535 * 24 23 22 26 26 C 1.38182 * 119.16446 * 359.50199 * 25 24 23 27 27 N 1.31856 * 119.61945 * 305.00168 * 22 21 19 28 28 C 1.38267 * 120.10549 * 0.27009 * 13 12 11 29 29 H 0.97001 * 119.99989 * 359.97438 * 1 2 3 30 30 H 1.08005 * 120.05618 * 0.02562 * 10 9 7 31 31 H 1.08002 * 119.83950 * 179.97438 * 11 10 9 32 32 H 1.08000 * 119.78251 * 179.97438 * 12 11 10 33 33 H 0.97003 * 120.00127 * 325.77945 * 14 13 12 34 34 H 0.96997 * 120.00214 * 180.02562 * 17 15 14 35 35 H 0.96997 * 120.00146 * 0.02562 * 18 17 15 36 36 H 1.08999 * 109.47618 * 60.00257 * 21 19 18 37 37 H 1.08999 * 109.47209 * 299.99654 * 21 19 18 38 38 H 1.07993 * 120.42068 * 359.95694 * 23 22 21 39 39 H 1.07997 * 120.78691 * 180.22999 * 24 23 22 40 40 H 1.07999 * 120.42023 * 179.77979 * 25 24 23 41 41 H 1.07996 * 119.61546 * 180.25246 * 26 25 24 42 42 H 1.08004 * 120.16311 * 179.75041 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 2.3848 2.1070 -1.3948 5 1 1.4961 2.6201 0.8023 6 1 3.5883 1.4122 0.5925 7 6 2.0079 -1.2118 0.0005 8 1 3.0534 -1.2316 0.2707 9 6 1.3461 -2.4105 -0.3526 10 6 0.2107 -2.3743 -1.1842 11 6 -0.4280 -3.5451 -1.5242 12 6 0.0406 -4.7601 -1.0515 13 6 1.1626 -4.8113 -0.2284 14 7 1.6269 -6.0442 0.2438 15 6 2.9486 -6.2465 0.4134 16 8 3.7433 -5.3933 0.0685 17 7 3.3894 -7.3943 0.9654 18 7 2.4736 -8.3775 1.3625 19 6 2.9144 -9.5255 1.9140 20 8 4.1037 -9.7073 2.0670 21 6 1.9295 -10.5833 2.3405 22 6 2.6738 -11.7573 2.9225 23 6 2.3600 -12.2037 4.1926 24 6 3.0470 -13.2877 4.7165 25 6 4.0353 -13.8788 3.9439 26 6 4.2935 -13.3778 2.6823 27 7 3.6166 -12.3472 2.2142 28 6 1.8150 -3.6455 0.1281 29 1 -0.4850 0.8401 0.0004 30 1 -0.1580 -1.4294 -1.5554 31 1 -1.2992 -3.5164 -2.1618 32 1 -0.4676 -5.6735 -1.3234 33 1 0.9976 -6.7533 0.4490 34 1 4.3405 -7.5397 1.0878 35 1 1.5225 -8.2323 1.2398 36 1 1.3515 -10.9112 1.4766 37 1 1.2567 -10.1712 3.0926 38 1 1.5870 -11.7162 4.7681 39 1 2.8207 -13.6605 5.7045 40 1 4.5931 -14.7229 4.3217 41 1 5.0588 -13.8351 2.0727 42 1 2.6829 -3.6838 0.7698 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001661887787.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:27:43 Heat of formation + Delta-G solvation = 39.287576 kcal Electronic energy + Delta-G solvation = -27164.061994 eV Core-core repulsion = 23110.738854 eV Total energy + Delta-G solvation = -4053.323140 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.132 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -40.90878 -40.30786 -39.20819 -37.33959 -35.67184 -34.51461 -33.53849 -32.99677 -32.68655 -31.14953 -29.83716 -28.45306 -27.82204 -25.31309 -23.91147 -23.13183 -22.36527 -21.32161 -20.87351 -20.12098 -18.85542 -18.03435 -17.43201 -17.15109 -16.69922 -16.14718 -15.86326 -15.67220 -15.43934 -15.02349 -14.85978 -14.65288 -14.45154 -14.27177 -13.87073 -13.52628 -13.38299 -13.15163 -12.91553 -12.65739 -12.21643 -12.10527 -11.70961 -11.46773 -11.14304 -11.12998 -10.97230 -10.53724 -10.45934 -10.23145 -10.20697 -9.79587 -9.71025 -9.60437 -9.36627 -9.15957 -9.08869 -8.38651 -7.46633 -6.95414 -6.72215 -4.34315 0.69577 0.95307 1.78634 2.27527 2.70771 2.87587 3.10374 3.15650 3.20525 3.23463 3.46187 3.55623 3.78072 3.97121 4.15671 4.30267 4.50333 4.64045 4.67434 4.74366 4.87776 4.94805 4.95841 5.23551 5.34832 5.69118 5.71620 5.79830 6.16480 6.27458 6.35264 6.37460 6.46683 6.64378 7.01841 7.05760 7.14693 7.24009 7.27348 7.56120 7.68437 7.69148 7.88449 7.99165 8.09464 8.20990 8.37728 8.64218 8.75610 8.93772 8.97434 10.21051 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.026231 B = 0.001834 C = 0.001790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1067.183235 B =15267.429078 C =15640.394489 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.795 5.795 2 C 0.075 3.925 3 Si 0.909 3.091 4 H -0.268 1.268 5 H -0.278 1.278 6 H -0.261 1.261 7 C -0.457 4.457 8 H 0.079 0.921 9 C 0.120 3.880 10 C -0.170 4.170 11 C -0.091 4.091 12 C -0.262 4.262 13 C 0.164 3.836 14 N -0.677 5.677 15 C 0.707 3.293 16 O -0.545 6.545 17 N -0.536 5.536 18 N -0.530 5.530 19 C 0.520 3.480 20 O -0.516 6.516 21 C -0.082 4.082 22 C 0.140 3.860 23 C -0.164 4.164 24 C -0.076 4.076 25 C -0.175 4.175 26 C 0.104 3.896 27 N -0.457 5.457 28 C -0.210 4.210 29 H 0.280 0.720 30 H 0.119 0.881 31 H 0.092 0.908 32 H 0.089 0.911 33 H 0.388 0.612 34 H 0.440 0.560 35 H 0.419 0.581 36 H 0.120 0.880 37 H 0.117 0.883 38 H 0.136 0.864 39 H 0.135 0.865 40 H 0.134 0.866 41 H 0.156 0.844 42 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.088 -24.007 8.104 25.362 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.420 5.420 2 C -0.142 4.142 3 Si 0.734 3.266 4 H -0.193 1.193 5 H -0.203 1.203 6 H -0.185 1.185 7 C -0.486 4.486 8 H 0.097 0.903 9 C 0.117 3.883 10 C -0.190 4.190 11 C -0.110 4.110 12 C -0.283 4.283 13 C 0.072 3.928 14 N -0.325 5.325 15 C 0.407 3.593 16 O -0.416 6.416 17 N -0.295 5.295 18 N -0.282 5.282 19 C 0.305 3.695 20 O -0.389 6.389 21 C -0.124 4.124 22 C 0.001 3.999 23 C -0.184 4.184 24 C -0.102 4.102 25 C -0.195 4.195 26 C -0.053 4.053 27 N -0.165 5.165 28 C -0.231 4.231 29 H 0.091 0.909 30 H 0.137 0.863 31 H 0.110 0.890 32 H 0.107 0.893 33 H 0.223 0.777 34 H 0.286 0.714 35 H 0.260 0.740 36 H 0.138 0.862 37 H 0.135 0.865 38 H 0.154 0.846 39 H 0.153 0.847 40 H 0.152 0.848 41 H 0.173 0.827 42 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 0.246 -22.947 7.119 24.027 hybrid contribution -0.323 -0.049 1.039 1.089 sum -0.077 -22.995 8.158 24.400 Atomic orbital electron populations 1.69825 1.07525 1.29113 1.35586 1.25905 0.94752 1.01307 0.92230 0.86283 0.80666 0.80559 0.79139 1.19328 1.20338 1.18521 1.19615 0.97844 0.90898 1.40265 0.90266 1.17496 0.90888 0.91604 0.88318 1.21357 0.99306 0.96902 1.01445 1.20446 0.98547 0.92624 0.99420 1.19983 1.02499 0.96947 1.08893 1.17213 0.96192 0.82239 0.97127 1.42571 1.04852 1.16005 1.69088 1.15789 0.83672 0.80830 0.79010 1.91096 1.54193 1.41108 1.55154 1.44769 1.06153 1.11233 1.67342 1.44885 1.06013 1.13166 1.64167 1.20433 0.90428 0.80899 0.77784 1.90780 1.16591 1.77740 1.53777 1.20508 0.96960 0.91217 1.03735 1.20436 0.93349 0.94900 0.91170 1.21933 1.01908 0.98442 0.96125 1.21557 0.94336 0.94569 0.99780 1.22189 0.99280 1.01833 0.96161 1.22758 0.97149 0.91756 0.93665 1.67432 1.04894 1.07315 1.36889 1.20997 1.04345 0.90902 1.06904 0.90945 0.86277 0.88959 0.89289 0.77746 0.71412 0.73983 0.86244 0.86523 0.84568 0.84723 0.84786 0.82721 0.87491 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.51 10.94 55.55 0.61 -19.91 16 2 C 0.08 1.92 5.16 -17.35 -0.09 1.83 16 3 Si 0.91 19.10 29.59 -169.99 -5.03 14.07 16 4 H -0.27 -5.56 7.11 56.52 0.40 -5.15 16 5 H -0.28 -5.67 7.11 56.52 0.40 -5.27 16 6 H -0.26 -5.51 7.11 56.52 0.40 -5.10 16 7 C -0.46 -12.50 9.05 -37.74 -0.34 -12.84 16 8 H 0.08 2.15 7.90 -52.49 -0.41 1.74 16 9 C 0.12 3.28 5.57 -106.85 -0.59 2.68 16 10 C -0.17 -4.41 8.69 -38.84 -0.34 -4.74 16 11 C -0.09 -2.08 10.02 -39.69 -0.40 -2.48 16 12 C -0.26 -5.55 9.97 -39.10 -0.39 -5.94 16 13 C 0.16 3.62 6.25 -83.76 -0.52 3.09 16 14 N -0.68 -11.55 5.29 -14.27 -0.08 -11.63 16 15 C 0.71 12.84 8.40 -86.92 -0.73 12.11 16 16 O -0.54 -12.54 14.93 5.28 0.08 -12.46 16 17 N -0.54 -7.64 6.26 27.64 0.17 -7.47 16 18 N -0.53 -5.40 6.25 31.22 0.20 -5.20 16 19 C 0.52 5.53 7.88 -10.99 -0.09 5.44 16 20 O -0.52 -7.76 15.17 5.56 0.08 -7.67 16 21 C -0.08 -0.54 6.10 -29.04 -0.18 -0.71 16 22 C 0.14 1.25 5.76 -82.58 -0.48 0.78 16 23 C -0.16 -1.12 9.71 -39.44 -0.38 -1.51 16 24 C -0.08 -0.48 10.18 -39.28 -0.40 -0.87 16 25 C -0.17 -1.16 10.11 -39.44 -0.40 -1.55 16 26 C 0.10 0.91 11.18 -17.55 -0.20 0.71 16 27 N -0.46 -5.05 9.22 -9.47 -0.09 -5.14 16 28 C -0.21 -5.39 8.39 -38.69 -0.32 -5.71 16 29 H 0.28 6.54 8.30 -40.82 -0.34 6.21 16 30 H 0.12 3.17 6.17 -52.48 -0.32 2.84 16 31 H 0.09 1.84 8.06 -52.49 -0.42 1.42 16 32 H 0.09 1.59 8.06 -52.49 -0.42 1.17 16 33 H 0.39 4.79 6.76 -40.82 -0.28 4.51 16 34 H 0.44 6.49 8.10 -182.60 -1.48 5.01 16 35 H 0.42 2.92 6.72 -182.60 -1.23 1.70 16 36 H 0.12 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.12 0.35 7.87 -51.93 -0.41 -0.06 16 38 H 0.14 0.56 7.95 -52.49 -0.42 0.14 16 39 H 0.13 0.48 8.06 -52.49 -0.42 0.06 16 40 H 0.13 0.53 8.06 -52.49 -0.42 0.11 16 41 H 0.16 1.01 8.06 -52.49 -0.42 0.59 16 42 H 0.11 2.85 6.48 -52.48 -0.34 2.51 16 LS Contribution 366.08 15.07 5.52 5.52 Total: -1.00 -36.14 366.08 -10.94 -47.08 By element: Atomic # 1 Polarization: 19.07 SS G_CDS: -6.56 Total: 12.52 kcal Atomic # 6 Polarization: -3.86 SS G_CDS: -5.85 Total: -9.71 kcal Atomic # 7 Polarization: -50.16 SS G_CDS: 0.81 Total: -49.35 kcal Atomic # 8 Polarization: -20.30 SS G_CDS: 0.16 Total: -20.13 kcal Atomic # 14 Polarization: 19.10 SS G_CDS: -5.03 Total: 14.07 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -36.14 -10.94 -47.08 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001661887787.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.367 kcal (2) G-P(sol) polarization free energy of solvation -36.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.228 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.941 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.079 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.288 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds