Wall clock time and date at job start Tue Mar 31 2020 23:41:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31404 * 1 3 3 Si 1.86805 * 119.99665 * 2 1 4 4 H 1.48500 * 109.46917 * 269.99918 * 3 2 1 5 5 H 1.48489 * 109.47218 * 30.00117 * 3 2 1 6 6 H 1.48507 * 109.46875 * 150.00079 * 3 2 1 7 7 C 1.38954 * 120.00544 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00109 * 180.02562 * 7 2 1 9 9 N 1.37095 * 119.99842 * 0.02562 * 7 2 1 10 10 C 1.34775 * 120.00191 * 179.97438 * 9 7 2 11 11 O 1.21293 * 119.99908 * 0.02562 * 10 9 7 12 12 C 1.50696 * 119.99850 * 179.97438 * 10 9 7 13 13 N 1.46906 * 109.46844 * 179.97438 * 12 10 9 14 14 C 1.46905 * 110.99844 * 180.02562 * 13 12 10 15 15 C 1.52997 * 109.46913 * 180.02562 * 14 13 12 16 16 H 1.09004 * 109.47261 * 60.00018 * 15 14 13 17 17 O 1.42905 * 109.47264 * 299.99929 * 15 14 13 18 18 C 1.53002 * 109.47143 * 179.97438 * 15 14 13 19 19 N 1.46503 * 109.47189 * 184.99897 * 18 15 14 20 20 C 1.34774 * 119.99721 * 180.02562 * 19 18 15 21 21 O 1.21508 * 120.00384 * 359.97438 * 20 19 18 22 22 C 1.48154 * 119.99690 * 179.97438 * 20 19 18 23 23 C 1.39903 * 120.91101 * 359.72099 * 22 20 19 24 24 C 1.38039 * 119.06943 * 179.72693 * 23 22 20 25 25 N 1.31882 * 120.93372 * 0.56007 * 24 23 22 26 26 C 1.31964 * 122.01067 * 359.71147 * 25 24 23 27 27 F 1.35098 * 119.58551 * 180.02562 * 26 25 24 28 28 C 1.38524 * 120.82914 * 0.02562 * 26 25 24 29 29 H 0.96996 * 120.00108 * 0.02562 * 1 2 3 30 30 H 0.97003 * 119.99732 * 359.97438 * 9 7 2 31 31 H 1.09002 * 109.47140 * 60.00883 * 12 10 9 32 32 H 1.08999 * 109.47717 * 300.00478 * 12 10 9 33 33 H 1.00895 * 111.00244 * 303.95681 * 13 12 10 34 34 H 1.08992 * 109.46864 * 60.00452 * 14 13 12 35 35 H 1.09002 * 109.47085 * 300.00275 * 14 13 12 36 36 H 0.96702 * 113.99404 * 300.00214 * 17 15 14 37 37 H 1.08997 * 109.47011 * 304.99871 * 18 15 14 38 38 H 1.09005 * 109.46847 * 64.99998 * 18 15 14 39 39 H 0.96993 * 119.99759 * 359.97438 * 19 18 15 40 40 H 1.08004 * 120.46205 * 359.97438 * 23 22 20 41 41 H 1.08001 * 119.53070 * 180.29323 * 24 23 22 42 42 H 1.07999 * 120.51386 * 179.97438 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3140 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 2.4954 2.0465 -1.4001 5 1 1.4455 2.6527 0.7000 6 1 3.5456 1.4403 0.7001 7 6 2.0089 -1.2033 0.0005 8 1 3.0889 -1.2032 0.0010 9 7 1.3235 -2.3906 0.0005 10 6 1.9975 -3.5578 0.0005 11 8 3.2104 -3.5577 0.0010 12 6 1.2440 -4.8629 0.0011 13 7 2.1987 -5.9794 0.0004 14 6 1.4984 -7.2708 0.0003 15 6 2.5234 -8.4067 0.0002 16 1 3.1483 -8.3323 0.8902 17 8 3.3426 -8.3090 -1.1667 18 6 1.7941 -9.7517 0.0008 19 7 2.7710 -10.8369 0.1210 20 6 2.3550 -12.1187 0.1424 21 8 1.1698 -12.3743 0.0624 22 6 3.3429 -13.2161 0.2634 23 6 4.7124 -12.9438 0.3509 24 6 5.5991 -13.9952 0.4682 25 7 5.1724 -15.2430 0.4874 26 6 3.8908 -15.5453 0.4020 27 9 3.5079 -16.8407 0.4270 28 6 2.9330 -14.5512 0.2870 29 1 -0.4850 0.8400 -0.0004 30 1 0.3535 -2.3907 0.0005 31 1 0.6171 -4.9209 -0.8887 32 1 0.6176 -4.9205 0.8913 33 1 2.8330 -5.9123 -0.7814 34 1 0.8732 -7.3450 -0.8894 35 1 0.8738 -7.3455 0.8905 36 1 2.8517 -8.3674 -1.9978 37 1 1.1031 -9.7900 0.8428 38 1 1.2387 -9.8643 -0.9305 39 1 3.7171 -10.6329 0.1845 40 1 5.0705 -11.9251 0.3309 41 1 6.6576 -13.7933 0.5411 42 1 1.8854 -14.8045 0.2170 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001667795670.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:41:47 Heat of formation + Delta-G solvation = -121.766503 kcal Electronic energy + Delta-G solvation = -27278.814617 eV Core-core repulsion = 22787.738423 eV Total energy + Delta-G solvation = -4491.076193 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.138 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -49.56608 -41.18445 -39.72093 -38.61874 -37.96090 -35.17953 -34.74234 -33.82484 -33.50443 -31.62674 -31.27364 -30.43996 -27.57603 -25.75817 -24.59056 -24.23419 -23.21705 -22.07944 -21.25744 -19.38589 -19.15572 -18.02855 -17.93342 -17.42710 -16.86368 -16.78663 -16.63815 -16.50226 -15.96590 -15.66200 -15.60222 -15.08779 -14.84133 -14.66802 -14.50835 -14.27354 -14.02216 -13.84534 -13.74334 -13.51332 -13.05439 -13.00092 -12.80749 -12.50179 -11.89195 -11.65309 -11.54833 -11.29386 -11.06068 -10.95955 -10.71298 -10.51746 -10.41564 -10.27191 -10.23091 -9.73132 -9.67719 -9.54025 -8.52136 -8.15412 -7.99566 -6.44764 -3.85720 -0.08549 0.21647 2.20860 2.33754 2.92368 3.03111 3.15742 3.24737 3.30613 3.74865 3.86070 3.87027 3.90778 4.07786 4.12277 4.18372 4.20080 4.61412 4.66395 4.75400 4.78403 4.91196 5.02148 5.03015 5.16358 5.20097 5.23265 5.27457 5.48044 5.65322 5.74665 5.80147 5.86324 5.90270 6.20765 6.83071 6.91553 7.06376 7.26779 7.52406 7.52786 7.59379 8.02984 8.57776 9.14782 9.50693 10.02000 10.72896 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.040869 B = 0.001407 C = 0.001369 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 684.959632 B =19900.128021 C =20443.544410 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.023 3.977 3 Si 0.930 3.070 4 H -0.278 1.278 5 H -0.283 1.283 6 H -0.269 1.269 7 C -0.301 4.301 8 H 0.103 0.897 9 N -0.563 5.563 10 C 0.440 3.560 11 O -0.582 6.582 12 C 0.050 3.950 13 N -0.663 5.663 14 C 0.030 3.970 15 C 0.098 3.902 16 H 0.118 0.882 17 O -0.553 6.553 18 C 0.087 3.913 19 N -0.710 5.710 20 C 0.558 3.442 21 O -0.524 6.524 22 C -0.058 4.058 23 C -0.153 4.153 24 C 0.138 3.862 25 N -0.499 5.499 26 C 0.308 3.692 27 F -0.106 7.106 28 C -0.138 4.138 29 H 0.272 0.728 30 H 0.392 0.608 31 H 0.043 0.957 32 H 0.086 0.914 33 H 0.357 0.643 34 H 0.033 0.967 35 H 0.084 0.916 36 H 0.375 0.625 37 H 0.085 0.915 38 H 0.076 0.924 39 H 0.407 0.593 40 H 0.152 0.848 41 H 0.178 0.822 42 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.112 -27.225 -0.580 27.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.179 4.179 3 Si 0.757 3.243 4 H -0.204 1.204 5 H -0.209 1.209 6 H -0.194 1.194 7 C -0.430 4.430 8 H 0.121 0.879 9 N -0.200 5.200 10 C 0.225 3.775 11 O -0.466 6.466 12 C -0.082 4.082 13 N -0.297 5.297 14 C -0.100 4.100 15 C 0.038 3.962 16 H 0.135 0.865 17 O -0.358 6.358 18 C -0.037 4.037 19 N -0.363 5.363 20 C 0.343 3.657 21 O -0.400 6.400 22 C -0.069 4.069 23 C -0.173 4.173 24 C -0.018 4.018 25 N -0.215 5.215 26 C 0.154 3.846 27 F -0.085 7.085 28 C -0.160 4.160 29 H 0.082 0.918 30 H 0.225 0.775 31 H 0.061 0.939 32 H 0.104 0.896 33 H 0.177 0.823 34 H 0.051 0.949 35 H 0.102 0.898 36 H 0.222 0.778 37 H 0.103 0.897 38 H 0.095 0.905 39 H 0.244 0.756 40 H 0.169 0.831 41 H 0.195 0.805 42 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 5.048 -27.856 0.563 28.316 hybrid contribution -1.348 1.254 -1.290 2.248 sum 3.700 -26.602 -0.728 26.868 Atomic orbital electron populations 1.69605 1.05956 1.28201 1.50518 1.25264 0.95632 0.99741 0.97249 0.85851 0.79262 0.80755 0.78385 1.20413 1.20910 1.19380 1.19713 0.93403 0.82222 1.47676 0.87884 1.41861 1.09194 1.04605 1.64311 1.19775 0.88395 0.84689 0.84651 1.90533 1.13713 1.87021 1.55350 1.21688 0.94307 0.91025 1.01213 1.59980 1.18547 0.99181 1.51993 1.22525 0.95503 0.90358 1.01657 1.22241 0.92983 0.90666 0.90295 0.86478 1.86658 1.37467 1.95932 1.15750 1.22186 0.91791 0.86077 1.03653 1.45742 1.11586 1.05067 1.73897 1.18010 0.87816 0.82586 0.77293 1.90825 1.16721 1.83698 1.48799 1.20212 0.93890 0.93583 0.99182 1.22465 0.92502 1.02133 1.00227 1.22590 1.00929 0.85074 0.93212 1.66926 1.16218 1.24463 1.13846 1.17998 0.88848 0.79685 0.98035 1.91667 1.90241 1.33498 1.93132 1.21955 1.02115 0.91223 1.00736 0.91849 0.77468 0.93880 0.89577 0.82286 0.94892 0.89812 0.77798 0.89728 0.90549 0.75597 0.83056 0.80550 0.82061 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.20 13.05 55.50 0.72 -23.47 16 2 C 0.02 0.60 5.50 -17.47 -0.10 0.51 16 3 Si 0.93 20.78 29.55 -169.99 -5.02 15.75 16 4 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 5 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 6 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 7 C -0.30 -8.29 9.68 -14.93 -0.14 -8.43 16 8 H 0.10 2.98 7.16 -52.49 -0.38 2.61 16 9 N -0.56 -14.01 5.29 -10.97 -0.06 -14.07 16 10 C 0.44 10.13 7.82 -10.99 -0.09 10.04 16 11 O -0.58 -15.57 15.78 5.55 0.09 -15.48 16 12 C 0.05 0.83 6.17 -4.97 -0.03 0.80 16 13 N -0.66 -9.73 6.13 -115.05 -0.70 -10.44 16 14 C 0.03 0.29 5.39 -3.82 -0.02 0.27 16 15 C 0.10 0.75 3.27 -26.73 -0.09 0.66 16 16 H 0.12 0.98 8.14 -51.93 -0.42 0.56 16 17 O -0.55 -4.55 12.62 -35.23 -0.44 -4.99 16 18 C 0.09 0.58 5.31 -4.04 -0.02 0.56 16 19 N -0.71 -4.48 5.46 -61.15 -0.33 -4.82 16 20 C 0.56 4.67 7.80 -12.19 -0.10 4.58 16 21 O -0.52 -6.25 16.44 5.36 0.09 -6.16 16 22 C -0.06 -0.40 5.91 -104.66 -0.62 -1.01 16 23 C -0.15 -0.68 9.61 -39.03 -0.38 -1.06 16 24 C 0.14 0.69 11.17 -17.60 -0.20 0.50 16 25 N -0.50 -4.07 10.35 -13.65 -0.14 -4.21 16 26 C 0.31 2.56 8.41 -17.39 -0.15 2.42 16 27 F -0.11 -0.95 17.29 2.25 0.04 -0.91 16 28 C -0.14 -1.04 9.66 -38.93 -0.38 -1.42 16 29 H 0.27 6.90 8.31 -40.82 -0.34 6.56 16 30 H 0.39 9.29 7.90 -40.82 -0.32 8.97 16 31 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.09 1.31 8.14 -51.93 -0.42 0.89 16 33 H 0.36 5.59 7.82 -39.29 -0.31 5.29 16 34 H 0.03 0.28 8.14 -51.93 -0.42 -0.14 16 35 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.37 2.04 9.05 45.56 0.41 2.45 16 37 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.41 1.80 6.61 -40.82 -0.27 1.53 16 40 H 0.15 0.25 6.53 -52.48 -0.34 -0.09 16 41 H 0.18 0.31 8.06 -52.49 -0.42 -0.11 16 42 H 0.16 1.16 7.74 -52.49 -0.41 0.75 16 LS Contribution 375.14 15.07 5.65 5.65 Total: -1.00 -35.23 375.14 -6.54 -41.77 By element: Atomic # 1 Polarization: 17.08 SS G_CDS: -4.13 Total: 12.95 kcal Atomic # 6 Polarization: 10.72 SS G_CDS: -2.29 Total: 8.43 kcal Atomic # 7 Polarization: -56.49 SS G_CDS: -0.51 Total: -57.00 kcal Atomic # 8 Polarization: -26.37 SS G_CDS: -0.27 Total: -26.64 kcal Atomic # 9 Polarization: -0.95 SS G_CDS: 0.04 Total: -0.91 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.02 Total: 15.75 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -35.23 -6.54 -41.77 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001667795670.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.001 kcal (2) G-P(sol) polarization free energy of solvation -35.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.765 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds