Wall clock time and date at job start Tue Mar 31 2020 23:31:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86799 * 120.00025 * 2 1 4 4 H 1.48500 * 109.47327 * 270.00397 * 3 2 1 5 5 H 1.48503 * 109.47155 * 30.00358 * 3 2 1 6 6 H 1.48500 * 109.47187 * 150.00173 * 3 2 1 7 7 C 1.38948 * 120.00052 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00280 * 180.02562 * 7 2 1 9 9 N 1.37101 * 120.00172 * 359.97438 * 7 2 1 10 10 C 1.34771 * 119.99964 * 180.02562 * 9 7 2 11 11 O 1.21295 * 120.00535 * 0.02562 * 10 9 7 12 12 C 1.50703 * 119.99748 * 180.02562 * 10 9 7 13 13 N 1.46903 * 109.47046 * 180.02562 * 12 10 9 14 14 C 1.46902 * 110.99753 * 179.97438 * 13 12 10 15 15 C 1.53006 * 109.46859 * 179.97438 * 14 13 12 16 16 H 1.09002 * 109.46824 * 60.00443 * 15 14 13 17 17 O 1.42899 * 109.47421 * 300.00387 * 15 14 13 18 18 C 1.53000 * 109.46846 * 180.02562 * 15 14 13 19 19 N 1.46499 * 109.46840 * 185.00008 * 18 15 14 20 20 C 1.34779 * 119.99872 * 180.02562 * 19 18 15 21 21 O 1.21531 * 120.00049 * 0.02562 * 20 19 18 22 22 C 1.48055 * 119.99856 * 180.02562 * 20 19 18 23 23 C 1.39377 * 119.68870 * 179.72823 * 22 20 19 24 24 C 1.38473 * 119.09133 * 179.79512 * 23 22 20 25 25 C 1.38896 * 118.46806 * 0.47309 * 24 23 22 26 26 F 1.35095 * 120.35254 * 179.76887 * 25 24 23 27 27 C 1.38878 * 119.29752 * 359.74819 * 25 24 23 28 28 N 1.31458 * 120.85861 * 0.02562 * 27 25 24 29 29 H 0.96998 * 120.00038 * 359.97438 * 1 2 3 30 30 H 0.97000 * 119.99623 * 0.02562 * 9 7 2 31 31 H 1.08995 * 109.47144 * 60.00011 * 12 10 9 32 32 H 1.09006 * 109.46928 * 299.99940 * 12 10 9 33 33 H 1.00898 * 111.00188 * 56.04772 * 13 12 10 34 34 H 1.09002 * 109.47040 * 60.00470 * 14 13 12 35 35 H 1.09001 * 109.47640 * 300.00197 * 14 13 12 36 36 H 0.96702 * 113.99557 * 300.00370 * 17 15 14 37 37 H 1.09002 * 109.47398 * 305.00335 * 18 15 14 38 38 H 1.09001 * 109.47194 * 65.00515 * 18 15 14 39 39 H 0.97000 * 120.00420 * 0.02562 * 19 18 15 40 40 H 1.08005 * 120.45629 * 0.02562 * 23 22 20 41 41 H 1.07996 * 120.76355 * 180.22002 * 24 23 22 42 42 H 1.08004 * 119.57053 * 180.02562 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4956 2.0465 -1.4000 5 1 1.4456 2.6527 0.7001 6 1 3.5457 1.4402 0.7000 7 6 2.0089 -1.2033 -0.0005 8 1 3.0889 -1.2034 -0.0001 9 7 1.3234 -2.3907 -0.0005 10 6 1.9973 -3.5578 -0.0005 11 8 3.2103 -3.5578 -0.0001 12 6 1.2438 -4.8629 -0.0011 13 7 2.1984 -5.9795 -0.0004 14 6 1.4981 -7.2708 -0.0003 15 6 2.5231 -8.4068 -0.0002 16 1 3.1478 -8.3323 0.8899 17 8 3.3424 -8.3093 -1.1669 18 6 1.7936 -9.7518 -0.0008 19 7 2.7704 -10.8370 0.1198 20 6 2.3544 -12.1188 0.1403 21 8 1.1691 -12.3744 0.0583 22 6 3.3414 -13.2155 0.2626 23 6 2.9036 -14.5385 0.2889 24 6 3.8378 -15.5547 0.3994 25 6 5.1808 -15.2124 0.4901 26 9 6.1240 -16.1729 0.6039 27 6 5.5440 -13.8722 0.4622 28 7 4.6346 -12.9294 0.3519 29 1 -0.4850 0.8400 0.0004 30 1 0.3534 -2.3906 -0.0005 31 1 0.6175 -4.9205 -0.8913 32 1 0.6168 -4.9208 0.8887 33 1 2.8327 -5.9125 0.7815 34 1 0.8736 -7.3455 -0.8906 35 1 0.8727 -7.3451 0.8894 36 1 2.8517 -8.3678 -1.9981 37 1 1.1019 -9.7903 0.8408 38 1 1.2391 -9.8639 -0.9324 39 1 3.7164 -10.6331 0.1848 40 1 1.8505 -14.7681 0.2202 41 1 3.5288 -16.5893 0.4187 42 1 6.5871 -13.6011 0.5320 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001667809021.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:31:32 Heat of formation + Delta-G solvation = -126.024260 kcal Electronic energy + Delta-G solvation = -27239.199299 eV Core-core repulsion = 22747.938475 eV Total energy + Delta-G solvation = -4491.260824 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.138 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -49.67988 -41.13344 -39.50442 -38.46498 -37.80795 -35.04758 -34.58618 -33.77922 -33.20330 -31.89065 -31.23093 -30.20613 -27.38237 -25.47370 -24.72817 -24.24594 -23.10764 -21.97692 -21.18104 -19.28298 -18.84600 -18.17869 -17.99568 -17.89089 -16.99611 -16.60266 -16.44723 -16.01059 -15.76503 -15.55864 -15.31630 -14.95144 -14.80768 -14.52188 -14.45481 -14.32726 -13.87476 -13.82047 -13.71081 -13.40107 -13.20772 -13.13433 -12.57128 -12.47144 -11.87151 -11.55603 -11.49784 -11.16153 -11.03082 -10.84722 -10.69337 -10.38865 -10.36984 -10.21827 -10.08156 -9.73470 -9.50296 -9.42381 -8.45659 -8.06707 -7.95354 -6.41252 -3.82051 -0.15617 0.37674 2.13171 2.57475 3.15708 3.18663 3.24342 3.27215 3.33150 3.52651 3.90280 3.94293 4.01182 4.06538 4.18544 4.23071 4.33280 4.62023 4.68109 4.77627 4.92427 4.99243 5.10278 5.14118 5.16796 5.23894 5.30696 5.36357 5.51415 5.76677 5.81527 5.83454 5.95239 5.98624 6.25558 6.83041 7.13883 7.16695 7.52269 7.55865 7.66151 7.73605 8.06890 8.61857 9.18556 9.54774 10.06383 10.76509 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.034779 B = 0.001421 C = 0.001375 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 804.880966 B =19701.934099 C =20364.104940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.022 3.978 3 Si 0.930 3.070 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.270 1.270 7 C -0.300 4.300 8 H 0.103 0.897 9 N -0.564 5.564 10 C 0.440 3.560 11 O -0.581 6.581 12 C 0.050 3.950 13 N -0.658 5.658 14 C 0.030 3.970 15 C 0.101 3.899 16 H 0.105 0.895 17 O -0.541 6.541 18 C 0.086 3.914 19 N -0.700 5.700 20 C 0.571 3.429 21 O -0.533 6.533 22 C 0.068 3.932 23 C -0.081 4.081 24 C -0.116 4.116 25 C 0.071 3.929 26 F -0.123 7.123 27 C 0.078 3.922 28 N -0.428 5.428 29 H 0.271 0.729 30 H 0.392 0.608 31 H 0.086 0.914 32 H 0.043 0.957 33 H 0.351 0.649 34 H 0.078 0.922 35 H 0.038 0.962 36 H 0.375 0.625 37 H 0.081 0.919 38 H 0.077 0.923 39 H 0.417 0.583 40 H 0.160 0.840 41 H 0.157 0.843 42 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.578 -31.570 1.342 31.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.179 4.179 3 Si 0.758 3.242 4 H -0.204 1.204 5 H -0.210 1.210 6 H -0.194 1.194 7 C -0.429 4.429 8 H 0.121 0.879 9 N -0.201 5.201 10 C 0.226 3.774 11 O -0.465 6.465 12 C -0.082 4.082 13 N -0.290 5.290 14 C -0.101 4.101 15 C 0.040 3.960 16 H 0.123 0.877 17 O -0.345 6.345 18 C -0.039 4.039 19 N -0.351 5.351 20 C 0.356 3.644 21 O -0.410 6.410 22 C -0.070 4.070 23 C -0.102 4.102 24 C -0.142 4.142 25 C 0.049 3.951 26 F -0.102 7.102 27 C -0.084 4.084 28 N -0.139 5.139 29 H 0.081 0.919 30 H 0.225 0.775 31 H 0.104 0.896 32 H 0.061 0.939 33 H 0.170 0.830 34 H 0.096 0.904 35 H 0.056 0.944 36 H 0.223 0.777 37 H 0.099 0.901 38 H 0.095 0.905 39 H 0.254 0.746 40 H 0.178 0.822 41 H 0.174 0.826 42 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges 4.219 -30.606 1.037 30.913 hybrid contribution -0.726 -0.250 0.606 0.978 sum 3.493 -30.856 1.643 31.097 Atomic orbital electron populations 1.69611 1.05940 1.28144 1.50669 1.25258 0.95632 0.99716 0.97320 0.85852 0.79211 0.80775 0.78411 1.20384 1.20958 1.19427 1.19716 0.93399 0.82243 1.47564 0.87901 1.41860 1.09181 1.04600 1.64448 1.19790 0.88401 0.84698 0.84531 1.90537 1.13718 1.87020 1.55223 1.21692 0.94306 0.91057 1.01169 1.59954 1.18384 0.99182 1.51523 1.22569 0.95666 0.90322 1.01565 1.22097 0.92616 0.90589 0.90664 0.87732 1.86649 1.36595 1.95931 1.15342 1.22191 0.91872 0.86385 1.03442 1.45718 1.12138 1.04776 1.72508 1.17712 0.87045 0.82466 0.77206 1.90820 1.16179 1.83725 1.50234 1.21249 0.90759 0.93530 1.01497 1.22075 1.02155 0.91102 0.94867 1.21726 0.90933 1.01943 0.99603 1.19097 0.86864 0.87365 1.01754 1.91567 1.63441 1.62278 1.92872 1.22994 1.00659 0.86575 0.98149 1.67624 1.00981 1.36520 1.08753 0.91890 0.77480 0.89609 0.93921 0.82984 0.90400 0.94364 0.77726 0.90125 0.90483 0.74572 0.82221 0.82572 0.80562 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.53 13.05 55.50 0.72 -23.81 16 2 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 3 Si 0.93 21.09 29.55 -169.99 -5.02 16.07 16 4 H -0.28 -6.24 7.11 56.52 0.40 -5.83 16 5 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 6 H -0.27 -6.11 7.11 56.52 0.40 -5.70 16 7 C -0.30 -8.39 9.68 -14.93 -0.14 -8.54 16 8 H 0.10 3.03 7.16 -52.48 -0.38 2.65 16 9 N -0.56 -14.30 5.29 -10.96 -0.06 -14.36 16 10 C 0.44 10.39 7.82 -10.99 -0.09 10.31 16 11 O -0.58 -15.90 15.78 5.54 0.09 -15.81 16 12 C 0.05 0.87 6.17 -4.97 -0.03 0.84 16 13 N -0.66 -10.19 5.99 -115.05 -0.69 -10.88 16 14 C 0.03 0.32 5.35 -3.82 -0.02 0.29 16 15 C 0.10 0.94 3.21 -26.73 -0.09 0.85 16 16 H 0.10 0.99 8.14 -51.93 -0.42 0.57 16 17 O -0.54 -5.94 13.15 -35.23 -0.46 -6.40 16 18 C 0.09 0.71 5.31 -4.04 -0.02 0.69 16 19 N -0.70 -6.18 5.49 -61.18 -0.34 -6.52 16 20 C 0.57 5.74 7.81 -12.23 -0.10 5.64 16 21 O -0.53 -6.67 16.32 5.34 0.09 -6.59 16 22 C 0.07 0.57 6.75 -83.02 -0.56 0.01 16 23 C -0.08 -0.52 9.63 -39.07 -0.38 -0.90 16 24 C -0.12 -0.57 10.15 -39.25 -0.40 -0.97 16 25 C 0.07 0.41 7.36 -39.10 -0.29 0.12 16 26 F -0.12 -0.75 17.28 2.25 0.04 -0.71 16 27 C 0.08 0.47 11.17 -17.47 -0.20 0.27 16 28 N -0.43 -3.39 9.53 -9.74 -0.09 -3.49 16 29 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 30 H 0.39 9.46 7.90 -40.82 -0.32 9.14 16 31 H 0.09 1.36 8.14 -51.93 -0.42 0.94 16 32 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.35 5.72 8.43 -39.29 -0.33 5.38 16 34 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 35 H 0.04 0.37 8.14 -51.93 -0.42 -0.05 16 36 H 0.38 3.13 9.04 45.56 0.41 3.55 16 37 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.42 3.54 7.80 -40.82 -0.32 3.22 16 40 H 0.16 0.89 7.64 -52.48 -0.40 0.49 16 41 H 0.16 0.37 8.06 -52.49 -0.42 -0.05 16 42 H 0.18 0.64 8.06 -52.48 -0.42 0.22 16 LS Contribution 378.04 15.07 5.70 5.70 Total: -1.00 -34.69 378.04 -6.70 -41.39 By element: Atomic # 1 Polarization: 20.56 SS G_CDS: -4.28 Total: 16.28 kcal Atomic # 6 Polarization: 11.52 SS G_CDS: -2.40 Total: 9.12 kcal Atomic # 7 Polarization: -58.60 SS G_CDS: -0.45 Total: -59.06 kcal Atomic # 8 Polarization: -28.50 SS G_CDS: -0.29 Total: -28.79 kcal Atomic # 9 Polarization: -0.75 SS G_CDS: 0.04 Total: -0.71 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -34.69 -6.70 -41.39 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001667809021.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.631 kcal (2) G-P(sol) polarization free energy of solvation -34.691 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.322 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.702 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.393 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.024 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds