Wall clock time and date at job start Tue Mar 31 2020 23:12:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30831 * 1 3 3 Si 1.86798 * 120.00194 * 2 1 4 4 H 1.48493 * 109.47607 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47064 * 300.00151 * 3 2 1 6 6 H 1.48504 * 109.46944 * 59.99654 * 3 2 1 7 7 C 1.39930 * 119.99831 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00226 * 196.79531 * 7 2 1 9 9 C 1.41409 * 120.00205 * 16.79844 * 7 2 1 10 10 C 1.40776 * 120.20829 * 25.16560 * 9 7 2 11 11 C 1.37641 * 119.88075 * 179.97438 * 10 9 7 12 12 C 1.38531 * 120.32406 * 0.02562 * 11 10 9 13 13 C 1.39248 * 120.42697 * 359.95560 * 12 11 10 14 14 N 1.39952 * 119.94391 * 180.02562 * 13 12 11 15 15 C 1.34777 * 119.99982 * 145.77885 * 14 13 12 16 16 O 1.21587 * 119.99982 * 354.83242 * 15 14 13 17 17 N 1.34776 * 120.00140 * 174.83446 * 15 14 13 18 18 N 1.40105 * 119.99904 * 359.97438 * 17 15 14 19 19 C 1.34783 * 119.99787 * 180.02562 * 18 17 15 20 20 O 1.21280 * 119.99962 * 359.97438 * 19 18 17 21 21 C 1.50703 * 119.99667 * 179.97438 * 19 18 17 22 22 C 1.50693 * 109.46839 * 179.97438 * 21 19 18 23 23 C 1.38671 * 120.41762 * 270.24821 * 22 21 19 24 24 C 1.38637 * 118.42174 * 180.24183 * 23 22 21 25 25 C 1.38227 * 119.15851 * 359.75813 * 24 23 22 26 26 N 1.31855 * 120.76552 * 359.97438 * 25 24 23 27 27 C 1.31889 * 121.72599 * 0.02562 * 26 25 24 28 28 C 1.38271 * 120.10535 * 0.27748 * 13 12 11 29 29 H 0.97001 * 120.00074 * 0.02562 * 1 2 3 30 30 H 1.07997 * 120.06075 * 0.02562 * 10 9 7 31 31 H 1.08009 * 119.83656 * 179.97438 * 11 10 9 32 32 H 1.08003 * 119.78464 * 179.97438 * 12 11 10 33 33 H 0.96999 * 120.00527 * 325.77686 * 14 13 12 34 34 H 0.96996 * 120.00381 * 179.97438 * 17 15 14 35 35 H 0.96996 * 119.99716 * 359.97438 * 18 17 15 36 36 H 1.08998 * 109.47223 * 59.99498 * 21 19 18 37 37 H 1.09002 * 109.46497 * 299.99853 * 21 19 18 38 38 H 1.08003 * 120.79029 * 359.97432 * 23 22 21 39 39 H 1.07993 * 120.41891 * 179.73210 * 24 23 22 40 40 H 1.07997 * 119.62061 * 180.02562 * 25 24 23 41 41 H 1.07997 * 119.61928 * 179.97438 * 27 26 25 42 42 H 1.08005 * 120.15888 * 179.74820 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2424 1.6177 0.0000 4 1 3.7023 1.3464 -0.0006 5 1 1.8836 2.3964 -1.2125 6 1 1.8835 2.3964 1.2125 7 6 2.0079 -1.2119 0.0005 8 1 3.0534 -1.2318 0.2708 9 6 1.3461 -2.4105 -0.3528 10 6 0.2109 -2.3742 -1.1845 11 6 -0.4277 -3.5451 -1.5247 12 6 0.0408 -4.7601 -1.0521 13 6 1.1628 -4.8114 -0.2290 14 7 1.6277 -6.0444 0.2422 15 6 2.9495 -6.2461 0.4118 16 8 3.7438 -5.3923 0.0675 17 7 3.3908 -7.3941 0.9628 18 7 2.4755 -8.3777 1.3599 19 6 2.9168 -9.5256 1.9115 20 8 4.1063 -9.7072 2.0637 21 6 1.9322 -10.5833 2.3392 22 6 2.6772 -11.7576 2.9198 23 6 3.0912 -12.7994 2.1036 24 6 3.7690 -13.8615 2.6821 25 6 4.0121 -13.8444 4.0427 26 7 3.6082 -12.8340 4.7874 27 6 2.9610 -11.8072 4.2712 28 6 1.8151 -3.6456 0.1277 29 1 -0.4850 0.8400 -0.0004 30 1 -0.1578 -1.4294 -1.5557 31 1 -1.2989 -3.5163 -2.1625 32 1 -0.4673 -5.6735 -1.3242 33 1 0.9988 -6.7540 0.4468 34 1 4.3421 -7.5394 1.0846 35 1 1.5242 -8.2323 1.2386 36 1 1.3536 -10.9115 1.4757 37 1 1.2600 -10.1709 3.0916 38 1 2.8868 -12.7859 1.0432 39 1 4.1023 -14.6919 2.0774 40 1 4.5398 -14.6677 4.5010 41 1 2.6454 -10.9979 4.9129 42 1 2.6830 -3.6840 0.7694 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001671984839.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:12:11 Heat of formation + Delta-G solvation = 35.939465 kcal Electronic energy + Delta-G solvation = -27148.782473 eV Core-core repulsion = 23095.314149 eV Total energy + Delta-G solvation = -4053.468325 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.132 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -40.97460 -40.35957 -39.35032 -37.39259 -35.80425 -34.56502 -34.05672 -33.03702 -32.34707 -31.22746 -29.86890 -28.32470 -27.79076 -25.34390 -23.95777 -23.20323 -22.43406 -21.38836 -20.91832 -20.17717 -18.91236 -18.12781 -17.50485 -17.42219 -16.90824 -16.22295 -15.78991 -15.70401 -15.41785 -15.07465 -14.83576 -14.67247 -14.55580 -14.31001 -13.91418 -13.67703 -13.43285 -13.20564 -12.95154 -12.82679 -12.26027 -12.03136 -11.75471 -11.55433 -11.20371 -11.13966 -11.01370 -10.67529 -10.48243 -10.35998 -10.13840 -9.83947 -9.81011 -9.65326 -9.37643 -9.18865 -9.12378 -8.49672 -7.49739 -6.99332 -6.75093 -4.36996 0.66798 0.92036 1.71347 2.10282 2.66487 2.83678 3.09054 3.14825 3.15851 3.18956 3.43737 3.49774 3.95166 3.95358 4.13693 4.26518 4.33426 4.55913 4.59297 4.61227 4.85176 4.88128 4.92420 5.22213 5.37454 5.65871 5.70991 5.80941 6.11564 6.20849 6.31527 6.32849 6.38685 6.59325 6.98515 7.02036 7.09142 7.14411 7.23175 7.48579 7.61483 7.63728 7.81543 7.94146 8.06526 8.16408 8.31344 8.60490 8.70036 8.90744 8.94278 10.18304 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.026201 B = 0.001834 C = 0.001780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1068.408767 B =15267.015686 C =15722.446885 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.794 5.794 2 C 0.075 3.925 3 Si 0.908 3.092 4 H -0.260 1.260 5 H -0.272 1.272 6 H -0.275 1.275 7 C -0.456 4.456 8 H 0.080 0.920 9 C 0.120 3.880 10 C -0.170 4.170 11 C -0.091 4.091 12 C -0.262 4.262 13 C 0.163 3.837 14 N -0.676 5.676 15 C 0.707 3.293 16 O -0.543 6.543 17 N -0.538 5.538 18 N -0.527 5.527 19 C 0.514 3.486 20 O -0.527 6.527 21 C -0.088 4.088 22 C -0.121 4.121 23 C -0.059 4.059 24 C -0.172 4.172 25 C 0.099 3.901 26 N -0.485 5.485 27 C 0.117 3.883 28 C -0.210 4.210 29 H 0.280 0.720 30 H 0.120 0.880 31 H 0.092 0.908 32 H 0.089 0.911 33 H 0.388 0.612 34 H 0.440 0.560 35 H 0.421 0.579 36 H 0.113 0.887 37 H 0.115 0.885 38 H 0.134 0.866 39 H 0.136 0.864 40 H 0.155 0.845 41 H 0.154 0.846 42 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.167 -23.213 4.283 23.634 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.420 5.420 2 C -0.142 4.142 3 Si 0.733 3.267 4 H -0.183 1.183 5 H -0.197 1.197 6 H -0.200 1.200 7 C -0.486 4.486 8 H 0.098 0.902 9 C 0.117 3.883 10 C -0.190 4.190 11 C -0.110 4.110 12 C -0.284 4.284 13 C 0.072 3.928 14 N -0.325 5.325 15 C 0.407 3.593 16 O -0.413 6.413 17 N -0.297 5.297 18 N -0.278 5.278 19 C 0.299 3.701 20 O -0.401 6.401 21 C -0.130 4.130 22 C -0.124 4.124 23 C -0.085 4.085 24 C -0.192 4.192 25 C -0.058 4.058 26 N -0.193 5.193 27 C -0.040 4.040 28 C -0.232 4.232 29 H 0.091 0.909 30 H 0.137 0.863 31 H 0.111 0.889 32 H 0.107 0.893 33 H 0.222 0.778 34 H 0.286 0.714 35 H 0.262 0.738 36 H 0.131 0.869 37 H 0.133 0.867 38 H 0.152 0.848 39 H 0.153 0.847 40 H 0.173 0.827 41 H 0.172 0.828 42 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 0.151 -22.476 5.030 23.033 hybrid contribution -0.320 0.349 -0.843 0.967 sum -0.169 -22.127 4.187 22.520 Atomic orbital electron populations 1.69829 1.07543 1.29093 1.35514 1.25911 0.94751 1.01344 0.92204 0.86259 0.81149 0.80838 0.78501 1.18315 1.19690 1.20014 1.19635 0.97854 0.90896 1.40172 0.90235 1.17495 0.90877 0.91609 0.88323 1.21359 0.99294 0.96914 1.01419 1.20448 0.98542 0.92619 0.99413 1.19973 1.02501 0.96943 1.08937 1.17212 0.96234 0.82195 0.97205 1.42573 1.04805 1.16001 1.69090 1.15796 0.83704 0.80804 0.79023 1.91101 1.54216 1.40944 1.55078 1.44820 1.06134 1.11271 1.67435 1.44920 1.06172 1.13062 1.63690 1.20729 0.90498 0.81183 0.77643 1.90785 1.16770 1.78305 1.54254 1.20502 0.96971 0.91970 1.03571 1.20200 1.01117 0.95772 0.95283 1.21465 0.94412 0.92580 1.00021 1.22131 1.00572 0.99800 0.96709 1.22807 0.95914 0.96160 0.90929 1.67715 1.09992 1.01449 1.40129 1.22650 0.93364 0.95612 0.92418 1.20994 1.04358 0.90905 1.06906 0.90949 0.86264 0.88946 0.89309 0.77770 0.71387 0.73827 0.86895 0.86669 0.84822 0.84654 0.82741 0.82829 0.87494 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.33 10.94 55.55 0.61 -19.72 16 2 C 0.08 1.90 5.16 -17.34 -0.09 1.81 16 3 Si 0.91 18.92 29.59 -169.99 -5.03 13.89 16 4 H -0.26 -5.44 7.11 56.52 0.40 -5.04 16 5 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 6 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 7 C -0.46 -12.36 9.05 -37.74 -0.34 -12.71 16 8 H 0.08 2.14 7.90 -52.49 -0.41 1.73 16 9 C 0.12 3.24 5.57 -106.85 -0.59 2.64 16 10 C -0.17 -4.35 8.69 -38.84 -0.34 -4.69 16 11 C -0.09 -2.04 10.02 -39.69 -0.40 -2.44 16 12 C -0.26 -5.44 9.97 -39.10 -0.39 -5.83 16 13 C 0.16 3.53 6.25 -83.76 -0.52 3.00 16 14 N -0.68 -11.13 5.29 -14.27 -0.08 -11.21 16 15 C 0.71 12.34 8.40 -86.92 -0.73 11.61 16 16 O -0.54 -12.17 14.93 5.29 0.08 -12.10 16 17 N -0.54 -7.17 6.26 27.63 0.17 -6.99 16 18 N -0.53 -4.76 6.25 31.22 0.20 -4.57 16 19 C 0.51 4.66 7.94 -10.98 -0.09 4.57 16 20 O -0.53 -7.09 15.87 5.56 0.09 -7.00 16 21 C -0.09 -0.44 5.85 -29.04 -0.17 -0.61 16 22 C -0.12 -0.91 4.39 -104.48 -0.46 -1.36 16 23 C -0.06 -0.41 9.86 -39.27 -0.39 -0.80 16 24 C -0.17 -1.16 10.11 -39.44 -0.40 -1.56 16 25 C 0.10 0.78 11.18 -17.55 -0.20 0.59 16 26 N -0.48 -4.91 10.36 -13.25 -0.14 -5.04 16 27 C 0.12 1.03 10.86 -17.55 -0.19 0.84 16 28 C -0.21 -5.31 8.39 -38.69 -0.32 -5.64 16 29 H 0.28 6.47 8.30 -40.82 -0.34 6.13 16 30 H 0.12 3.14 6.17 -52.49 -0.32 2.81 16 31 H 0.09 1.82 8.06 -52.48 -0.42 1.39 16 32 H 0.09 1.55 8.06 -52.48 -0.42 1.12 16 33 H 0.39 4.53 6.76 -40.82 -0.28 4.25 16 34 H 0.44 6.07 8.10 -182.60 -1.48 4.59 16 35 H 0.42 2.52 6.72 -182.60 -1.23 1.29 16 36 H 0.11 0.25 8.10 -51.93 -0.42 -0.17 16 37 H 0.12 0.28 8.09 -51.93 -0.42 -0.14 16 38 H 0.13 0.67 8.06 -52.48 -0.42 0.24 16 39 H 0.14 0.56 8.06 -52.49 -0.42 0.14 16 40 H 0.16 0.82 8.06 -52.49 -0.42 0.39 16 41 H 0.15 1.08 8.06 -52.49 -0.42 0.66 16 42 H 0.11 2.81 6.48 -52.48 -0.34 2.47 16 LS Contribution 367.48 15.07 5.54 5.54 Total: -1.00 -35.46 367.48 -10.75 -46.21 By element: Atomic # 1 Polarization: 18.13 SS G_CDS: -6.57 Total: 11.56 kcal Atomic # 6 Polarization: -4.95 SS G_CDS: -5.62 Total: -10.56 kcal Atomic # 7 Polarization: -48.30 SS G_CDS: 0.76 Total: -47.54 kcal Atomic # 8 Polarization: -19.26 SS G_CDS: 0.17 Total: -19.10 kcal Atomic # 14 Polarization: 18.92 SS G_CDS: -5.03 Total: 13.89 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -35.46 -10.75 -46.21 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001671984839.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.152 kcal (2) G-P(sol) polarization free energy of solvation -35.461 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.691 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.752 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.213 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.939 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds