Wall clock time and date at job start Tue Mar 31 2020 23:12:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30831 * 1 3 3 Si 1.86798 * 120.00194 * 2 1 4 4 H 1.48493 * 109.47607 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47064 * 300.00151 * 3 2 1 6 6 H 1.48504 * 109.46944 * 59.99654 * 3 2 1 7 7 C 1.39930 * 119.99831 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00226 * 196.79531 * 7 2 1 9 9 C 1.41409 * 120.00205 * 16.79844 * 7 2 1 10 10 C 1.40776 * 120.20829 * 25.16560 * 9 7 2 11 11 C 1.37641 * 119.88075 * 179.97438 * 10 9 7 12 12 C 1.38531 * 120.32406 * 0.02562 * 11 10 9 13 13 C 1.39248 * 120.42697 * 359.95560 * 12 11 10 14 14 N 1.39952 * 119.94391 * 180.02562 * 13 12 11 15 15 C 1.34777 * 119.99982 * 145.77885 * 14 13 12 16 16 O 1.21587 * 119.99982 * 354.83242 * 15 14 13 17 17 N 1.34776 * 120.00140 * 174.83446 * 15 14 13 18 18 N 1.40105 * 119.99904 * 359.97438 * 17 15 14 19 19 C 1.34783 * 119.99787 * 180.02562 * 18 17 15 20 20 O 1.21280 * 119.99962 * 359.97438 * 19 18 17 21 21 C 1.50703 * 119.99667 * 179.97438 * 19 18 17 22 22 C 1.50693 * 109.46839 * 179.97438 * 21 19 18 23 23 C 1.38671 * 120.41762 * 270.24821 * 22 21 19 24 24 C 1.38637 * 118.42174 * 180.24183 * 23 22 21 25 25 C 1.38227 * 119.15851 * 359.75813 * 24 23 22 26 26 N 1.31855 * 120.76552 * 359.97438 * 25 24 23 27 27 C 1.31889 * 121.72599 * 0.02562 * 26 25 24 28 28 C 1.38271 * 120.10535 * 0.27748 * 13 12 11 29 29 H 0.97001 * 120.00074 * 0.02562 * 1 2 3 30 30 H 1.07997 * 120.06075 * 0.02562 * 10 9 7 31 31 H 1.08009 * 119.83656 * 179.97438 * 11 10 9 32 32 H 1.08003 * 119.78464 * 179.97438 * 12 11 10 33 33 H 0.96999 * 120.00527 * 325.77686 * 14 13 12 34 34 H 0.96996 * 120.00381 * 179.97438 * 17 15 14 35 35 H 0.96996 * 119.99716 * 359.97438 * 18 17 15 36 36 H 1.08998 * 109.47223 * 59.99498 * 21 19 18 37 37 H 1.09002 * 109.46497 * 299.99853 * 21 19 18 38 38 H 1.08003 * 120.79029 * 359.97432 * 23 22 21 39 39 H 1.07993 * 120.41891 * 179.73210 * 24 23 22 40 40 H 1.07997 * 119.62061 * 180.02562 * 25 24 23 41 41 H 1.07997 * 119.61928 * 179.97438 * 27 26 25 42 42 H 1.08005 * 120.15888 * 179.74820 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2424 1.6177 0.0000 4 1 3.7023 1.3464 -0.0006 5 1 1.8836 2.3964 -1.2125 6 1 1.8835 2.3964 1.2125 7 6 2.0079 -1.2119 0.0005 8 1 3.0534 -1.2318 0.2708 9 6 1.3461 -2.4105 -0.3528 10 6 0.2109 -2.3742 -1.1845 11 6 -0.4277 -3.5451 -1.5247 12 6 0.0408 -4.7601 -1.0521 13 6 1.1628 -4.8114 -0.2290 14 7 1.6277 -6.0444 0.2422 15 6 2.9495 -6.2461 0.4118 16 8 3.7438 -5.3923 0.0675 17 7 3.3908 -7.3941 0.9628 18 7 2.4755 -8.3777 1.3599 19 6 2.9168 -9.5256 1.9115 20 8 4.1063 -9.7072 2.0637 21 6 1.9322 -10.5833 2.3392 22 6 2.6772 -11.7576 2.9198 23 6 3.0912 -12.7994 2.1036 24 6 3.7690 -13.8615 2.6821 25 6 4.0121 -13.8444 4.0427 26 7 3.6082 -12.8340 4.7874 27 6 2.9610 -11.8072 4.2712 28 6 1.8151 -3.6456 0.1277 29 1 -0.4850 0.8400 -0.0004 30 1 -0.1578 -1.4294 -1.5557 31 1 -1.2989 -3.5163 -2.1625 32 1 -0.4673 -5.6735 -1.3242 33 1 0.9988 -6.7540 0.4468 34 1 4.3421 -7.5394 1.0846 35 1 1.5242 -8.2323 1.2386 36 1 1.3536 -10.9115 1.4757 37 1 1.2600 -10.1709 3.0916 38 1 2.8868 -12.7859 1.0432 39 1 4.1023 -14.6919 2.0774 40 1 4.5398 -14.6677 4.5010 41 1 2.6454 -10.9979 4.9129 42 1 2.6830 -3.6840 0.7694 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001671984839.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:12:10 Heat of formation + Delta-G solvation = 10.524943 kcal Electronic energy + Delta-G solvation = -27149.884530 eV Core-core repulsion = 23095.314149 eV Total energy + Delta-G solvation = -4054.570381 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.132 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.95976 -41.26391 -40.30846 -39.09189 -36.94326 -36.25262 -34.76502 -34.63567 -32.91395 -32.19121 -31.73478 -29.79004 -28.61306 -27.24577 -24.49806 -24.03109 -23.75921 -22.87719 -21.97793 -21.72136 -20.20252 -19.49539 -18.72291 -17.98259 -17.53110 -17.47179 -17.11492 -16.79457 -16.69504 -16.42309 -16.21787 -15.93583 -15.77577 -15.27296 -14.94335 -14.68300 -14.53571 -14.21624 -14.01898 -13.91953 -13.53443 -13.30594 -13.07334 -12.92585 -12.80282 -12.57157 -12.43865 -12.17633 -12.13703 -11.64192 -11.46240 -11.30631 -11.02498 -10.87344 -10.69944 -10.38735 -9.92099 -9.57129 -9.37544 -8.74617 -8.59797 -6.35623 0.10285 0.38497 0.74341 0.93503 1.03704 1.36882 1.39232 1.48747 1.51864 1.91448 2.02236 2.21885 2.74353 2.85337 3.43285 3.50151 3.73236 3.75439 3.94757 4.02449 4.10568 4.14506 4.49145 4.50734 4.59303 4.65637 4.79006 4.89620 4.94556 5.06871 5.10933 5.13562 5.21309 5.24799 5.30991 5.32107 5.54148 5.77956 5.81140 5.95426 6.10804 6.12689 6.22052 6.36443 6.62900 6.71087 6.95327 7.01888 7.05763 7.19118 7.35002 8.33755 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.026201 B = 0.001834 C = 0.001780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1068.408767 B =15267.015686 C =15722.446885 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.820 5.820 2 C 0.039 3.961 3 Si 0.978 3.022 4 H -0.268 1.268 5 H -0.259 1.259 6 H -0.262 1.262 7 C -0.502 4.502 8 H 0.060 0.940 9 C 0.088 3.912 10 C -0.195 4.195 11 C -0.090 4.090 12 C -0.242 4.242 13 C 0.172 3.828 14 N -0.659 5.659 15 C 0.708 3.292 16 O -0.600 6.600 17 N -0.530 5.530 18 N -0.514 5.514 19 C 0.518 3.482 20 O -0.573 6.573 21 C -0.078 4.078 22 C -0.128 4.128 23 C -0.069 4.069 24 C -0.174 4.174 25 C 0.080 3.920 26 N -0.521 5.521 27 C 0.093 3.907 28 C -0.237 4.237 29 H 0.289 0.711 30 H 0.103 0.897 31 H 0.126 0.874 32 H 0.140 0.860 33 H 0.416 0.584 34 H 0.440 0.560 35 H 0.437 0.563 36 H 0.153 0.847 37 H 0.147 0.853 38 H 0.157 0.843 39 H 0.160 0.840 40 H 0.172 0.828 41 H 0.162 0.838 42 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.317 -25.427 3.426 25.870 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.446 5.446 2 C -0.176 4.176 3 Si 0.799 3.201 4 H -0.192 1.192 5 H -0.183 1.183 6 H -0.187 1.187 7 C -0.532 4.532 8 H 0.078 0.922 9 C 0.085 3.915 10 C -0.215 4.215 11 C -0.109 4.109 12 C -0.264 4.264 13 C 0.079 3.921 14 N -0.310 5.310 15 C 0.408 3.592 16 O -0.474 6.474 17 N -0.285 5.285 18 N -0.269 5.269 19 C 0.306 3.694 20 O -0.450 6.450 21 C -0.118 4.118 22 C -0.130 4.130 23 C -0.095 4.095 24 C -0.194 4.194 25 C -0.076 4.076 26 N -0.229 5.229 27 C -0.063 4.063 28 C -0.259 4.259 29 H 0.100 0.900 30 H 0.121 0.879 31 H 0.144 0.856 32 H 0.157 0.843 33 H 0.255 0.745 34 H 0.285 0.715 35 H 0.282 0.718 36 H 0.170 0.830 37 H 0.165 0.835 38 H 0.174 0.826 39 H 0.178 0.822 40 H 0.189 0.811 41 H 0.179 0.821 42 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -2.063 -24.773 4.198 25.211 hybrid contribution 0.336 0.744 -0.551 0.985 sum -1.727 -24.029 3.647 24.365 Atomic orbital electron populations 1.69848 1.08558 1.30450 1.35787 1.26636 0.95600 1.04053 0.91292 0.85225 0.79063 0.76505 0.79297 1.19189 1.18281 1.18684 1.19751 0.97439 0.92787 1.43244 0.92163 1.17822 0.92045 0.92291 0.89347 1.21320 0.99871 0.97785 1.02565 1.20851 0.98930 0.92058 0.99017 1.20457 1.01270 0.98289 1.06357 1.17228 0.95725 0.82854 0.96314 1.42178 1.05072 1.15128 1.68598 1.15820 0.83419 0.81144 0.78865 1.91076 1.55650 1.43417 1.57304 1.44454 1.06932 1.11203 1.65872 1.45046 1.06193 1.11955 1.63660 1.21594 0.90611 0.81121 0.76054 1.90786 1.19148 1.79102 1.55931 1.20647 0.95862 0.89505 1.05837 1.20441 1.01099 0.96715 0.94788 1.21881 0.93958 0.92432 1.01195 1.22459 0.99891 1.00563 0.96445 1.23208 0.96233 0.96330 0.91818 1.67674 1.11203 1.02548 1.41522 1.22939 0.93944 0.95814 0.93625 1.20951 1.04578 0.92344 1.08026 0.90009 0.87864 0.85603 0.84251 0.74511 0.71494 0.71796 0.82976 0.83509 0.82561 0.82195 0.81105 0.82119 0.89953 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -43.10 10.94 21.82 0.24 -42.87 16 2 C 0.04 2.04 5.16 85.25 0.44 2.48 16 3 Si 0.98 39.99 29.59 68.60 2.03 42.02 16 4 H -0.27 -11.15 7.11 99.48 0.71 -10.45 16 5 H -0.26 -9.93 7.11 99.48 0.71 -9.22 16 6 H -0.26 -10.11 7.11 99.48 0.71 -9.40 16 7 C -0.50 -28.97 9.05 23.46 0.21 -28.76 16 8 H 0.06 3.53 7.90 -2.91 -0.02 3.51 16 9 C 0.09 4.95 5.57 -21.31 -0.12 4.83 16 10 C -0.20 -10.16 8.69 22.75 0.20 -9.97 16 11 C -0.09 -3.83 10.02 22.20 0.22 -3.61 16 12 C -0.24 -9.21 9.97 22.58 0.23 -8.99 16 13 C 0.17 7.21 6.25 38.09 0.24 7.45 16 14 N -0.66 -20.17 5.29 -317.33 -1.68 -21.85 16 15 C 0.71 24.27 8.40 179.05 1.50 25.78 16 16 O -0.60 -27.80 14.93 -3.99 -0.06 -27.86 16 17 N -0.53 -13.43 6.26 -184.75 -1.16 -14.59 16 18 N -0.51 -7.69 6.25 -173.52 -1.09 -8.78 16 19 C 0.52 7.90 7.94 87.66 0.70 8.60 16 20 O -0.57 -14.64 15.87 -3.03 -0.05 -14.69 16 21 C -0.08 -0.44 5.85 29.10 0.17 -0.27 16 22 C -0.13 -1.60 4.39 -19.78 -0.09 -1.69 16 23 C -0.07 -0.79 9.86 22.47 0.22 -0.57 16 24 C -0.17 -2.03 10.11 22.36 0.23 -1.80 16 25 C 0.08 1.22 11.18 84.69 0.95 2.17 16 26 N -0.52 -10.43 10.36 -195.84 -2.03 -12.46 16 27 C 0.09 1.56 10.86 84.67 0.92 2.48 16 28 C -0.24 -12.43 8.39 22.85 0.19 -12.24 16 29 H 0.29 13.57 8.30 -92.71 -0.77 12.80 16 30 H 0.10 5.61 6.17 -2.91 -0.02 5.59 16 31 H 0.13 4.48 8.06 -2.91 -0.02 4.46 16 32 H 0.14 3.93 8.06 -2.91 -0.02 3.91 16 33 H 0.42 7.90 6.76 -92.71 -0.63 7.28 16 34 H 0.44 12.00 8.10 -213.32 -1.73 10.27 16 35 H 0.44 3.26 6.72 -213.32 -1.43 1.83 16 36 H 0.15 -0.23 8.10 -2.39 -0.02 -0.25 16 37 H 0.15 0.00 8.09 -2.39 -0.02 -0.02 16 38 H 0.16 0.97 8.06 -2.91 -0.02 0.95 16 39 H 0.16 0.93 8.06 -2.91 -0.02 0.90 16 40 H 0.17 1.71 8.06 -2.91 -0.02 1.69 16 41 H 0.16 2.15 8.06 -2.91 -0.02 2.13 16 42 H 0.08 4.63 6.48 -2.91 -0.02 4.61 16 Total: -1.00 -84.34 367.48 -0.26 -84.60 By element: Atomic # 1 Polarization: 33.25 SS G_CDS: -2.67 Total: 30.58 kcal Atomic # 6 Polarization: -20.31 SS G_CDS: 6.21 Total: -14.10 kcal Atomic # 7 Polarization: -94.83 SS G_CDS: -5.71 Total: -100.54 kcal Atomic # 8 Polarization: -42.44 SS G_CDS: -0.11 Total: -42.55 kcal Atomic # 14 Polarization: 39.99 SS G_CDS: 2.03 Total: 42.02 kcal Total: -84.34 -0.26 -84.60 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001671984839.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.123 kcal (2) G-P(sol) polarization free energy of solvation -84.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.784 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.259 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.598 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.525 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds