Wall clock time and date at job start Wed Apr 1 2020 00:02:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38236 * 120.00732 * 2 1 4 4 C 1.38217 * 120.01484 * 179.97438 * 3 2 1 5 5 C 1.38273 * 120.02339 * 359.79275 * 4 3 2 6 6 C 1.38186 * 120.01238 * 0.46205 * 5 4 3 7 7 C 1.50696 * 120.00510 * 179.79030 * 6 5 4 8 8 C 1.50698 * 109.47358 * 264.72057 * 7 6 5 9 9 O 1.21285 * 119.99686 * 0.02562 * 8 7 6 10 10 N 1.34775 * 120.00318 * 179.97438 * 8 7 6 11 11 C 1.46502 * 120.00005 * 0.02562 * 10 8 7 12 12 C 1.46499 * 120.00337 * 180.02562 * 10 8 7 13 13 C 1.53000 * 109.46840 * 270.00307 * 12 10 8 14 14 H 1.08992 * 109.47399 * 59.99666 * 13 12 10 15 15 O 1.42900 * 109.47041 * 299.99263 * 13 12 10 16 16 C 1.53001 * 109.46886 * 180.02562 * 13 12 10 17 17 N 1.46500 * 109.47094 * 184.99933 * 16 13 12 18 18 C 1.36939 * 120.00025 * 179.97438 * 17 16 13 19 19 H 1.08000 * 119.99887 * 0.02562 * 18 17 16 20 20 C 1.38817 * 119.99964 * 180.02562 * 18 17 16 21 21 N 1.31624 * 119.99736 * 359.97438 * 20 18 17 22 22 Si 1.86798 * 119.99921 * 180.02562 * 20 18 17 23 23 H 1.48490 * 109.47540 * 89.99507 * 22 20 18 24 24 H 1.48499 * 109.46730 * 209.99903 * 22 20 18 25 25 H 1.48502 * 109.46976 * 329.99276 * 22 20 18 26 26 C 1.38324 * 120.00496 * 180.02562 * 2 1 3 27 27 Cl 1.73600 * 120.01417 * 359.95996 * 26 2 1 28 28 H 1.09002 * 109.47501 * 269.97934 * 1 2 3 29 29 H 1.09004 * 109.47061 * 29.97752 * 1 2 3 30 30 H 1.08992 * 109.47467 * 149.97481 * 1 2 3 31 31 H 1.08003 * 119.99413 * 0.02562 * 3 2 1 32 32 H 1.08003 * 119.98702 * 180.02562 * 4 3 2 33 33 H 1.07998 * 119.99352 * 180.25099 * 5 4 3 34 34 H 1.09006 * 109.47111 * 144.72002 * 7 6 5 35 35 H 1.09003 * 109.47456 * 24.72457 * 7 6 5 36 36 H 1.08996 * 109.47461 * 270.00146 * 11 10 8 37 37 H 1.08998 * 109.46888 * 29.99915 * 11 10 8 38 38 H 1.08994 * 109.47490 * 149.99977 * 11 10 8 39 39 H 1.09002 * 109.47391 * 149.99977 * 12 10 8 40 40 H 1.09001 * 109.46813 * 30.00033 * 12 10 8 41 41 H 0.96698 * 114.00516 * 300.00983 * 15 13 12 42 42 H 1.09008 * 109.46864 * 304.99696 * 16 13 12 43 43 H 1.09000 * 109.47679 * 64.99728 * 16 13 12 44 44 H 0.97004 * 120.00359 * 359.97438 * 17 16 13 45 45 H 0.97002 * 119.99299 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1971 0.0000 4 6 3.5805 1.1972 0.0005 5 6 4.2725 0.0002 0.0054 6 6 3.5825 -1.1971 0.0001 7 6 4.3369 -2.5017 0.0006 8 6 4.4811 -2.9991 -1.4146 9 8 4.0174 -2.3572 -2.3332 10 7 5.1263 -4.1568 -1.6595 11 6 5.6869 -4.9319 -0.5499 12 6 5.2671 -4.6401 -3.0353 13 6 4.0722 -5.5281 -3.3885 14 1 3.1517 -4.9514 -3.2984 15 8 4.0259 -6.6421 -2.4948 16 6 4.2195 -6.0334 -4.8251 17 7 3.0201 -6.7846 -5.2040 18 6 2.9237 -7.3356 -6.4539 19 1 3.7320 -7.2168 -7.1602 20 6 1.7870 -8.0469 -6.8130 21 7 0.8021 -8.1921 -5.9519 22 14 1.6558 -8.7993 -8.5177 23 1 2.2086 -10.1772 -8.4946 24 1 0.2300 -8.8447 -8.9302 25 1 2.4244 -7.9737 -9.4836 26 6 2.1987 -1.1979 -0.0005 27 17 1.3312 -2.7016 -0.0002 28 1 -0.3634 -0.0004 1.0277 29 1 -0.3633 0.8902 -0.5135 30 1 -0.3634 -0.8897 -0.5142 31 1 1.6583 2.1324 0.0004 32 1 4.1202 2.1328 0.0010 33 1 5.3525 0.0009 0.0099 34 1 3.7900 -3.2374 0.5904 35 1 5.3251 -2.3498 0.4349 36 1 6.7120 -4.6114 -0.3642 37 1 5.0876 -4.7696 0.3459 38 1 5.6783 -5.9913 -0.8058 39 1 6.1876 -5.2169 -3.1254 40 1 5.3024 -3.7904 -3.7170 41 1 4.8146 -7.2010 -2.5215 42 1 4.3443 -5.1847 -5.4978 43 1 5.0920 -6.6831 -4.8942 44 1 2.2942 -6.8916 -4.5695 45 1 0.0080 -8.6895 -6.2028 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001677095300.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:02:47 Heat of formation + Delta-G solvation = -83.547442 kcal Electronic energy + Delta-G solvation = -27222.264202 eV Core-core repulsion = 23264.722030 eV Total energy + Delta-G solvation = -3957.542172 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.134 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.33964 -40.20949 -38.79424 -37.42028 -36.38771 -35.79369 -34.68088 -33.28339 -32.76516 -31.15329 -29.02278 -27.89386 -27.79527 -26.52131 -24.61932 -23.16458 -22.75470 -22.06774 -20.15512 -19.26479 -18.22030 -17.85390 -17.60784 -17.31135 -16.89893 -16.56358 -16.40762 -16.22088 -15.70733 -15.36143 -15.10991 -14.94104 -14.60915 -14.39651 -14.29639 -13.96363 -13.81412 -13.62595 -13.43121 -13.29752 -13.19903 -13.05050 -12.99297 -12.76953 -12.62112 -12.42073 -12.36443 -12.20579 -12.15073 -12.05044 -11.84791 -11.61712 -11.25805 -11.00607 -10.85996 -9.66087 -9.56739 -9.52282 -9.04965 -7.96922 -5.27702 0.19311 0.28054 1.20545 1.44258 1.47601 1.55999 1.62428 2.03220 2.53590 2.67755 3.34007 3.47549 3.52664 3.65508 3.72433 3.80279 3.97264 4.04968 4.16802 4.23833 4.32994 4.35904 4.38890 4.43587 4.46507 4.55627 4.68006 4.69609 4.72318 4.75239 4.83636 4.88835 4.92350 5.03512 5.19295 5.20739 5.34074 5.41103 5.43759 5.48380 5.52503 5.90541 6.23231 6.39802 6.88411 7.19322 7.29174 8.04719 8.27931 9.26696 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.013914 B = 0.002700 C = 0.002464 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2011.907477 B =10366.285754 C =11358.951110 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.094 4.094 3 C -0.115 4.115 4 C -0.111 4.111 5 C -0.110 4.110 6 C -0.071 4.071 7 C -0.098 4.098 8 C 0.509 3.491 9 O -0.577 6.577 10 N -0.606 5.606 11 C 0.071 3.929 12 C 0.098 3.902 13 C 0.105 3.895 14 H 0.056 0.944 15 O -0.561 6.561 16 C 0.125 3.875 17 N -0.743 5.743 18 C -0.249 4.249 19 H 0.079 0.921 20 C -0.080 4.080 21 N -0.971 5.971 22 Si 0.980 3.020 23 H -0.282 1.282 24 H -0.296 1.296 25 H -0.268 1.268 26 C -0.049 4.049 27 Cl -0.082 7.082 28 H 0.087 0.913 29 H 0.086 0.914 30 H 0.055 0.945 31 H 0.155 0.845 32 H 0.159 0.841 33 H 0.152 0.848 34 H 0.110 0.890 35 H 0.142 0.858 36 H 0.084 0.916 37 H 0.080 0.920 38 H 0.083 0.917 39 H 0.118 0.882 40 H 0.077 0.923 41 H 0.383 0.617 42 H 0.023 0.977 43 H 0.043 0.957 44 H 0.372 0.628 45 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.484 18.416 20.594 30.317 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.095 4.095 3 C -0.133 4.133 4 C -0.129 4.129 5 C -0.128 4.128 6 C -0.073 4.073 7 C -0.137 4.137 8 C 0.298 3.702 9 O -0.457 6.457 10 N -0.338 5.338 11 C -0.070 4.070 12 C -0.026 4.026 13 C 0.044 3.956 14 H 0.074 0.926 15 O -0.367 6.367 16 C -0.003 4.003 17 N -0.385 5.385 18 C -0.380 4.380 19 H 0.097 0.903 20 C -0.272 4.272 21 N -0.622 5.622 22 Si 0.808 3.192 23 H -0.209 1.209 24 H -0.223 1.223 25 H -0.192 1.192 26 C -0.076 4.076 27 Cl -0.053 7.053 28 H 0.105 0.895 29 H 0.105 0.895 30 H 0.074 0.926 31 H 0.173 0.827 32 H 0.176 0.824 33 H 0.170 0.830 34 H 0.128 0.872 35 H 0.159 0.841 36 H 0.103 0.897 37 H 0.099 0.901 38 H 0.101 0.899 39 H 0.136 0.864 40 H 0.095 0.905 41 H 0.232 0.768 42 H 0.041 0.959 43 H 0.061 0.939 44 H 0.204 0.796 45 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 11.679 18.821 20.100 29.910 hybrid contribution -0.542 -1.157 -1.072 1.667 sum 11.138 17.664 19.028 28.251 Atomic orbital electron populations 1.20892 0.89615 1.03528 1.03503 1.20080 0.97656 0.91705 1.00043 1.21347 0.94860 0.97264 0.99833 1.21584 0.94278 0.99103 0.97932 1.21282 1.01192 0.90872 0.99441 1.19415 0.91201 0.96042 1.00606 1.20775 1.04067 0.95093 0.93771 1.20973 0.76967 0.80577 0.91655 1.90723 1.48961 1.58217 1.47782 1.47794 1.56016 1.21957 1.08044 1.22137 0.99501 0.97038 0.88363 1.21981 0.98273 0.98619 0.83691 1.22162 0.98515 0.86937 0.87969 0.92571 1.86603 1.46671 1.40750 1.62714 1.21446 0.90096 0.94445 0.94280 1.42493 1.18481 1.63572 1.13986 1.19686 1.01310 1.25536 0.91499 0.90298 1.25698 0.96577 1.02567 1.02351 1.69874 1.08215 1.47422 1.36684 0.85050 0.76458 0.78431 0.79268 1.20919 1.22275 1.19241 1.20987 0.92466 0.86946 1.07153 1.98368 1.76958 1.33093 1.96855 0.89494 0.89517 0.92554 0.82733 0.82370 0.83016 0.87206 0.84055 0.89744 0.90149 0.89869 0.86413 0.90485 0.76772 0.95921 0.93913 0.79635 0.94025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.24 9.62 71.24 0.68 -1.55 16 2 C -0.09 -2.07 5.88 -19.84 -0.12 -2.19 16 3 C -0.12 -1.96 9.70 22.26 0.22 -1.75 16 4 C -0.11 -1.71 10.05 22.27 0.22 -1.48 16 5 C -0.11 -1.94 9.68 22.27 0.22 -1.72 16 6 C -0.07 -1.60 4.38 -19.84 -0.09 -1.69 16 7 C -0.10 -1.89 3.90 29.10 0.11 -1.77 16 8 C 0.51 13.80 7.67 87.66 0.67 14.47 16 9 O -0.58 -21.38 15.61 -3.05 -0.05 -21.43 16 10 N -0.61 -13.83 2.80 -846.77 -2.37 -16.19 16 11 C 0.07 0.96 9.98 127.77 1.28 2.23 16 12 C 0.10 2.54 5.10 86.38 0.44 2.98 16 13 C 0.10 3.69 3.27 30.59 0.10 3.79 16 14 H 0.06 2.49 8.14 -2.39 -0.02 2.47 16 15 O -0.56 -18.61 12.00 -148.98 -1.79 -20.39 16 16 C 0.12 5.15 5.90 86.38 0.51 5.66 16 17 N -0.74 -40.60 5.55 -343.44 -1.91 -42.51 16 18 C -0.25 -14.58 9.99 84.03 0.84 -13.74 16 19 H 0.08 4.37 7.83 -2.91 -0.02 4.34 16 20 C -0.08 -4.82 5.50 84.86 0.47 -4.35 16 21 N -0.97 -62.92 13.06 21.65 0.28 -62.64 16 22 Si 0.98 47.80 29.55 68.60 2.03 49.83 16 23 H -0.28 -13.33 7.11 99.48 0.71 -12.62 16 24 H -0.30 -14.56 7.11 99.48 0.71 -13.86 16 25 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 26 C -0.05 -1.25 6.31 22.32 0.14 -1.11 16 27 Cl -0.08 -2.32 25.74 -2.72 -0.07 -2.39 16 28 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 29 H 0.09 1.30 8.09 -2.39 -0.02 1.28 16 30 H 0.06 1.27 6.90 -2.39 -0.02 1.26 16 31 H 0.16 1.72 8.06 -2.91 -0.02 1.70 16 32 H 0.16 1.38 8.06 -2.91 -0.02 1.36 16 33 H 0.15 1.82 8.06 -2.91 -0.02 1.80 16 34 H 0.11 2.05 6.39 -2.38 -0.02 2.04 16 35 H 0.14 1.54 8.01 -2.39 -0.02 1.53 16 36 H 0.08 0.66 8.14 -2.39 -0.02 0.64 16 37 H 0.08 0.93 6.44 -2.39 -0.02 0.92 16 38 H 0.08 1.09 6.88 -2.39 -0.02 1.07 16 39 H 0.12 2.14 8.07 -2.39 -0.02 2.12 16 40 H 0.08 2.27 7.42 -2.39 -0.02 2.26 16 41 H 0.38 9.29 8.79 -74.06 -0.65 8.64 16 42 H 0.02 0.97 8.14 -2.38 -0.02 0.95 16 43 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 44 H 0.37 22.41 7.67 -92.71 -0.71 21.69 16 45 H 0.25 15.67 8.31 -92.71 -0.77 14.90 16 Total: -1.00 -83.62 388.24 1.48 -82.14 By element: Atomic # 1 Polarization: 36.16 SS G_CDS: -0.34 Total: 35.82 kcal Atomic # 6 Polarization: -7.92 SS G_CDS: 5.69 Total: -2.22 kcal Atomic # 7 Polarization: -117.35 SS G_CDS: -3.99 Total: -121.34 kcal Atomic # 8 Polarization: -39.99 SS G_CDS: -1.84 Total: -41.82 kcal Atomic # 14 Polarization: 47.80 SS G_CDS: 2.03 Total: 49.83 kcal Atomic # 17 Polarization: -2.32 SS G_CDS: -0.07 Total: -2.39 kcal Total: -83.62 1.48 -82.14 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001677095300.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.410 kcal (2) G-P(sol) polarization free energy of solvation -83.622 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.032 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.485 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.137 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.547 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds