Wall clock time and date at job start Tue Mar 31 2020 23:23:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31631 * 1 3 3 Si 1.86795 * 120.00330 * 2 1 4 4 H 1.48499 * 109.47409 * 270.00315 * 3 2 1 5 5 H 1.48504 * 109.46732 * 30.00038 * 3 2 1 6 6 H 1.48503 * 109.47095 * 149.99764 * 3 2 1 7 7 C 1.38801 * 119.99737 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99873 * 180.02562 * 7 2 1 9 9 S 1.76198 * 120.00096 * 359.97438 * 7 2 1 10 10 C 1.81002 * 99.99878 * 180.02562 * 9 7 2 11 11 C 1.50706 * 109.47200 * 179.97438 * 10 9 7 12 12 O 1.21279 * 119.99507 * 0.02562 * 11 10 9 13 13 N 1.34774 * 120.00020 * 179.97438 * 11 10 9 14 14 C 1.46496 * 119.99544 * 180.02562 * 13 11 10 15 15 H 1.08997 * 115.52089 * 9.58343 * 14 13 11 16 16 C 1.53007 * 117.43939 * 224.23686 * 14 13 11 17 17 H 1.08997 * 119.53826 * 4.12272 * 16 14 13 18 18 C 1.57698 * 116.11096 * 161.63831 * 16 14 13 19 19 N 1.48153 * 104.67262 * 87.30768 * 18 16 14 20 20 C 1.34770 * 127.83577 * 139.77193 * 19 18 16 21 21 O 1.21280 * 119.99980 * 180.02562 * 20 19 18 22 22 C 1.50705 * 120.00300 * 0.02562 * 20 19 18 23 23 H 1.09007 * 109.82314 * 55.56416 * 22 20 19 24 24 C 1.54381 * 109.82934 * 294.58734 * 22 20 19 25 25 C 1.55307 * 102.25183 * 219.12656 * 24 22 20 26 26 C 1.54948 * 100.94062 * 34.13408 * 25 24 22 27 27 O 1.43238 * 109.83119 * 176.45048 * 22 20 19 28 28 C 1.48148 * 104.32357 * 319.77723 * 19 18 16 29 29 C 1.53003 * 117.44108 * 155.00191 * 14 13 11 30 30 H 1.09001 * 119.53792 * 355.88124 * 29 14 13 31 31 H 0.97001 * 119.99701 * 0.02562 * 1 2 3 32 32 H 1.09001 * 109.46925 * 60.00038 * 10 9 7 33 33 H 1.09000 * 109.47556 * 300.00312 * 10 9 7 34 34 H 0.96994 * 119.99756 * 0.02562 * 13 11 10 35 35 H 1.09000 * 110.91832 * 328.23604 * 18 16 14 36 36 H 1.09000 * 109.83904 * 205.83944 * 18 16 14 37 37 H 1.09004 * 110.84837 * 337.32046 * 24 22 20 38 38 H 1.09001 * 110.84691 * 100.93743 * 24 22 20 39 39 H 1.09000 * 111.12345 * 276.21133 * 25 24 22 40 40 H 1.09001 * 111.16144 * 152.07136 * 25 24 22 41 41 H 1.08996 * 110.30502 * 204.64141 * 26 25 24 42 42 H 1.09000 * 110.30842 * 82.47175 * 26 25 24 43 43 H 1.08997 * 110.40381 * 280.79806 * 28 19 18 44 44 H 1.08997 * 110.50307 * 158.41725 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6176 0.0000 4 1 2.4979 2.0464 -1.4000 5 1 1.4478 2.6526 0.7001 6 1 3.5479 1.4400 0.7001 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 16 1.1292 -2.7280 -0.0005 10 6 2.5158 -3.8914 -0.0005 11 6 1.9873 -5.3028 0.0001 12 8 0.7910 -5.5023 0.0000 13 7 2.8440 -6.3432 -0.0003 14 6 2.3302 -7.7151 -0.0003 15 1 1.2571 -7.8146 -0.1636 16 6 2.9943 -8.7167 0.9467 17 1 3.7700 -8.3752 1.6321 18 6 2.1703 -10.0232 1.2642 19 7 2.5318 -10.9673 0.1812 20 6 2.7642 -12.2910 0.2818 21 8 3.0531 -12.9328 -0.7059 22 6 2.6650 -12.9738 1.6217 23 1 1.6834 -12.7898 2.0586 24 6 3.7672 -12.4426 2.5630 25 6 4.2098 -13.7295 3.3115 26 6 4.0376 -14.7919 2.1969 27 8 2.8710 -14.3827 1.4655 28 6 2.5801 -10.1262 -1.0374 29 6 3.2352 -8.8070 -0.5745 30 1 4.1904 -8.5328 -1.0223 31 1 -0.4850 0.8401 -0.0004 32 1 3.1244 -3.7314 0.8895 33 1 3.1245 -3.7314 -0.8905 34 1 3.8007 -6.1835 -0.0006 35 1 1.0993 -9.8209 1.2501 36 1 2.4698 -10.4233 2.2329 37 1 4.5951 -12.0216 1.9924 38 1 3.3620 -11.7087 3.2596 39 1 3.5540 -13.9372 4.1570 40 1 5.2494 -13.6607 3.6316 41 1 3.8830 -15.7780 2.6348 42 1 4.9102 -14.7997 1.5437 43 1 1.5732 -9.9400 -1.4108 44 1 3.1878 -10.6029 -1.8065 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001688090831.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:23:09 Heat of formation + Delta-G solvation = -71.156523 kcal Electronic energy + Delta-G solvation = -26192.205292 eV Core-core repulsion = 22237.244137 eV Total energy + Delta-G solvation = -3954.961155 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.12276 -40.03882 -38.91271 -37.92737 -34.92617 -32.96159 -32.47753 -32.34851 -30.51393 -29.15106 -28.60240 -26.17760 -25.51061 -23.53563 -22.34668 -21.76292 -20.75310 -20.52001 -19.77622 -18.11552 -17.92747 -17.02638 -16.85329 -16.51285 -16.20576 -16.01296 -15.46276 -14.99998 -14.84716 -14.42197 -14.32853 -14.08418 -13.90356 -13.62966 -13.40853 -13.06533 -13.01481 -12.94331 -12.58097 -12.43780 -12.26530 -12.16332 -11.91297 -11.73653 -11.58132 -11.12087 -11.09106 -11.06755 -10.81903 -10.73566 -10.42698 -9.87310 -9.72657 -9.55833 -9.15214 -9.11373 -8.86228 -8.30751 -6.56114 -6.26438 -3.97694 2.18120 2.31588 2.75698 2.82173 3.19209 3.22441 3.27061 3.32894 3.37710 3.52200 3.81021 4.00151 4.15544 4.17769 4.24084 4.34397 4.36043 4.48986 4.56897 4.63057 4.76140 4.79811 4.94176 4.99497 5.05946 5.09040 5.16179 5.18758 5.19298 5.29552 5.41927 5.43462 5.49461 5.55051 5.65742 5.71674 5.78809 5.79926 6.04804 6.37156 6.43634 7.10688 7.50025 7.55187 7.77365 8.30327 8.43075 9.19043 10.80955 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.035442 B = 0.001678 C = 0.001654 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 789.834988 B =16682.815424 C =16926.478301 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.074 3.926 3 Si 0.919 3.081 4 H -0.277 1.277 5 H -0.282 1.282 6 H -0.272 1.272 7 C -0.537 4.537 8 H 0.073 0.927 9 S -0.058 6.058 10 C -0.154 4.154 11 C 0.538 3.462 12 O -0.511 6.511 13 N -0.710 5.710 14 C 0.132 3.868 15 H 0.140 0.860 16 C -0.186 4.186 17 H 0.129 0.871 18 C 0.124 3.876 19 N -0.622 5.622 20 C 0.524 3.476 21 O -0.522 6.522 22 C 0.070 3.930 23 H 0.108 0.892 24 C -0.146 4.146 25 C -0.155 4.155 26 C 0.047 3.953 27 O -0.352 6.352 28 C 0.136 3.864 29 C -0.188 4.188 30 H 0.123 0.877 31 H 0.269 0.731 32 H 0.091 0.909 33 H 0.092 0.908 34 H 0.401 0.599 35 H 0.086 0.914 36 H 0.087 0.913 37 H 0.083 0.917 38 H 0.095 0.905 39 H 0.084 0.916 40 H 0.088 0.912 41 H 0.092 0.908 42 H 0.063 0.937 43 H 0.080 0.920 44 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.581 -25.712 6.878 28.642 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.135 4.135 3 Si 0.745 3.255 4 H -0.202 1.202 5 H -0.207 1.207 6 H -0.197 1.197 7 C -0.685 4.685 8 H 0.091 0.909 9 S 0.169 5.831 10 C -0.304 4.304 11 C 0.325 3.675 12 O -0.384 6.384 13 N -0.362 5.362 14 C 0.024 3.976 15 H 0.158 0.842 16 C -0.207 4.207 17 H 0.147 0.853 18 C 0.001 3.999 19 N -0.358 5.358 20 C 0.312 3.688 21 O -0.397 6.397 22 C 0.008 3.992 23 H 0.126 0.874 24 C -0.184 4.184 25 C -0.192 4.192 26 C -0.030 4.030 27 O -0.270 6.270 28 C 0.014 3.986 29 C -0.208 4.208 30 H 0.141 0.859 31 H 0.079 0.921 32 H 0.110 0.890 33 H 0.110 0.890 34 H 0.236 0.764 35 H 0.104 0.896 36 H 0.105 0.895 37 H 0.102 0.898 38 H 0.113 0.887 39 H 0.103 0.897 40 H 0.107 0.893 41 H 0.110 0.890 42 H 0.082 0.918 43 H 0.098 0.902 44 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 8.443 -26.557 6.221 28.553 hybrid contribution 2.772 1.631 0.127 3.218 sum 11.215 -24.926 6.348 28.060 Atomic orbital electron populations 1.70013 1.05955 1.27534 1.46699 1.24993 0.95036 0.99054 0.94461 0.86160 0.79392 0.81519 0.78383 1.20242 1.20721 1.19703 1.22861 0.94916 0.91593 1.59171 0.90880 1.85417 1.04623 0.96328 1.96742 1.23540 1.06827 0.94941 1.05131 1.20374 0.86455 0.86115 0.74552 1.90710 1.15305 1.85426 1.46936 1.45394 1.09998 1.03807 1.76982 1.21607 0.98167 0.78903 0.98891 0.84238 1.24916 1.04205 0.98320 0.93290 0.85322 1.22547 0.99178 0.87160 0.91033 1.49181 1.69519 1.06693 1.10450 1.20653 0.76618 0.80014 0.91506 1.90733 1.46878 1.63343 1.38745 1.22600 1.01245 0.83141 0.92181 0.87414 1.23170 0.98172 0.98993 0.98057 1.23296 1.03249 0.94010 0.98694 1.23502 0.88698 0.98545 0.92209 1.88537 1.45882 1.19656 1.72886 1.21725 1.01328 0.87744 0.87844 1.24114 1.02729 0.97196 0.96808 0.85908 0.92124 0.89027 0.89002 0.76437 0.89614 0.89507 0.89835 0.88672 0.89746 0.89317 0.88995 0.91834 0.90164 0.89195 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.62 13.22 55.49 0.73 -24.89 16 2 C 0.07 2.07 5.49 -17.43 -0.10 1.97 16 3 Si 0.92 20.94 29.55 -169.99 -5.02 15.92 16 4 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 5 H -0.28 -6.33 7.11 56.52 0.40 -5.92 16 6 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 7 C -0.54 -14.89 9.50 30.94 0.29 -14.60 16 8 H 0.07 1.91 7.80 -52.48 -0.41 1.50 16 9 S -0.06 -1.51 20.57 -107.50 -2.21 -3.72 16 10 C -0.15 -2.90 6.16 36.01 0.22 -2.67 16 11 C 0.54 9.18 7.85 -10.98 -0.09 9.09 16 12 O -0.51 -10.76 15.43 5.56 0.09 -10.67 16 13 N -0.71 -8.27 5.56 -53.80 -0.30 -8.56 16 14 C 0.13 1.32 5.92 -67.93 -0.40 0.92 16 15 H 0.14 1.64 7.40 -51.93 -0.38 1.25 16 16 C -0.19 -1.36 7.34 -87.38 -0.64 -2.00 16 17 H 0.13 0.81 8.14 -51.93 -0.42 0.39 16 18 C 0.12 0.81 6.65 -0.56 0.00 0.80 16 19 N -0.62 -5.47 3.32 -167.17 -0.55 -6.02 16 20 C 0.52 5.71 7.14 -10.99 -0.08 5.63 16 21 O -0.52 -8.01 16.79 -14.09 -0.24 -8.25 16 22 C 0.07 0.56 3.35 -27.16 -0.09 0.47 16 23 H 0.11 0.67 8.14 -51.93 -0.42 0.25 16 24 C -0.15 -0.74 5.47 -24.78 -0.14 -0.88 16 25 C -0.15 -0.66 7.16 -24.48 -0.18 -0.83 16 26 C 0.05 0.31 7.78 38.19 0.30 0.60 16 27 O -0.35 -3.61 10.56 -54.88 -0.58 -4.19 16 28 C 0.14 1.20 6.85 -2.41 -0.02 1.18 16 29 C -0.19 -1.49 6.98 -89.22 -0.62 -2.11 16 30 H 0.12 0.88 8.14 -51.93 -0.42 0.46 16 31 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 32 H 0.09 1.57 8.14 -51.92 -0.42 1.15 16 33 H 0.09 1.59 8.14 -51.92 -0.42 1.17 16 34 H 0.40 3.51 8.83 -40.82 -0.36 3.15 16 35 H 0.09 0.55 8.14 -51.93 -0.42 0.12 16 36 H 0.09 0.38 5.30 -51.93 -0.28 0.10 16 37 H 0.08 0.49 7.84 -51.93 -0.41 0.08 16 38 H 0.09 0.29 6.81 -51.93 -0.35 -0.06 16 39 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 40 H 0.09 0.26 8.14 -51.93 -0.42 -0.16 16 41 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 42 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 43 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 44 H 0.09 0.87 7.88 -51.93 -0.41 0.46 16 LS Contribution 379.70 15.07 5.72 5.72 Total: -1.00 -37.04 379.70 -10.28 -47.33 By element: Atomic # 1 Polarization: 6.14 SS G_CDS: -6.38 Total: -0.25 kcal Atomic # 6 Polarization: -0.88 SS G_CDS: -1.54 Total: -2.42 kcal Atomic # 7 Polarization: -39.36 SS G_CDS: -0.12 Total: -39.48 kcal Atomic # 8 Polarization: -22.38 SS G_CDS: -0.73 Total: -23.11 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.92 kcal Atomic # 16 Polarization: -1.51 SS G_CDS: -2.21 Total: -3.72 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -37.04 -10.28 -47.33 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001688090831.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.827 kcal (2) G-P(sol) polarization free energy of solvation -37.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.872 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.330 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds