Wall clock time and date at job start Tue Mar 31 2020 23:23:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31631 * 1 3 3 Si 1.86795 * 120.00330 * 2 1 4 4 H 1.48499 * 109.47409 * 270.00315 * 3 2 1 5 5 H 1.48504 * 109.46732 * 30.00038 * 3 2 1 6 6 H 1.48503 * 109.47095 * 149.99764 * 3 2 1 7 7 C 1.38801 * 119.99737 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99873 * 180.02562 * 7 2 1 9 9 S 1.76198 * 120.00096 * 359.97438 * 7 2 1 10 10 C 1.81002 * 99.99878 * 180.02562 * 9 7 2 11 11 C 1.50706 * 109.47200 * 179.97438 * 10 9 7 12 12 O 1.21279 * 119.99507 * 0.02562 * 11 10 9 13 13 N 1.34774 * 120.00020 * 179.97438 * 11 10 9 14 14 C 1.46496 * 119.99544 * 180.02562 * 13 11 10 15 15 H 1.08997 * 115.52089 * 9.58343 * 14 13 11 16 16 C 1.53007 * 117.43939 * 224.23686 * 14 13 11 17 17 H 1.08997 * 119.53826 * 4.12272 * 16 14 13 18 18 C 1.57698 * 116.11096 * 161.63831 * 16 14 13 19 19 N 1.48153 * 104.67262 * 87.30768 * 18 16 14 20 20 C 1.34770 * 127.83577 * 139.77193 * 19 18 16 21 21 O 1.21280 * 119.99980 * 180.02562 * 20 19 18 22 22 C 1.50705 * 120.00300 * 0.02562 * 20 19 18 23 23 H 1.09007 * 109.82314 * 55.56416 * 22 20 19 24 24 C 1.54381 * 109.82934 * 294.58734 * 22 20 19 25 25 C 1.55307 * 102.25183 * 219.12656 * 24 22 20 26 26 C 1.54948 * 100.94062 * 34.13408 * 25 24 22 27 27 O 1.43238 * 109.83119 * 176.45048 * 22 20 19 28 28 C 1.48148 * 104.32357 * 319.77723 * 19 18 16 29 29 C 1.53003 * 117.44108 * 155.00191 * 14 13 11 30 30 H 1.09001 * 119.53792 * 355.88124 * 29 14 13 31 31 H 0.97001 * 119.99701 * 0.02562 * 1 2 3 32 32 H 1.09001 * 109.46925 * 60.00038 * 10 9 7 33 33 H 1.09000 * 109.47556 * 300.00312 * 10 9 7 34 34 H 0.96994 * 119.99756 * 0.02562 * 13 11 10 35 35 H 1.09000 * 110.91832 * 328.23604 * 18 16 14 36 36 H 1.09000 * 109.83904 * 205.83944 * 18 16 14 37 37 H 1.09004 * 110.84837 * 337.32046 * 24 22 20 38 38 H 1.09001 * 110.84691 * 100.93743 * 24 22 20 39 39 H 1.09000 * 111.12345 * 276.21133 * 25 24 22 40 40 H 1.09001 * 111.16144 * 152.07136 * 25 24 22 41 41 H 1.08996 * 110.30502 * 204.64141 * 26 25 24 42 42 H 1.09000 * 110.30842 * 82.47175 * 26 25 24 43 43 H 1.08997 * 110.40381 * 280.79806 * 28 19 18 44 44 H 1.08997 * 110.50307 * 158.41725 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6176 0.0000 4 1 2.4979 2.0464 -1.4000 5 1 1.4478 2.6526 0.7001 6 1 3.5479 1.4400 0.7001 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 16 1.1292 -2.7280 -0.0005 10 6 2.5158 -3.8914 -0.0005 11 6 1.9873 -5.3028 0.0001 12 8 0.7910 -5.5023 0.0000 13 7 2.8440 -6.3432 -0.0003 14 6 2.3302 -7.7151 -0.0003 15 1 1.2571 -7.8146 -0.1636 16 6 2.9943 -8.7167 0.9467 17 1 3.7700 -8.3752 1.6321 18 6 2.1703 -10.0232 1.2642 19 7 2.5318 -10.9673 0.1812 20 6 2.7642 -12.2910 0.2818 21 8 3.0531 -12.9328 -0.7059 22 6 2.6650 -12.9738 1.6217 23 1 1.6834 -12.7898 2.0586 24 6 3.7672 -12.4426 2.5630 25 6 4.2098 -13.7295 3.3115 26 6 4.0376 -14.7919 2.1969 27 8 2.8710 -14.3827 1.4655 28 6 2.5801 -10.1262 -1.0374 29 6 3.2352 -8.8070 -0.5745 30 1 4.1904 -8.5328 -1.0223 31 1 -0.4850 0.8401 -0.0004 32 1 3.1244 -3.7314 0.8895 33 1 3.1245 -3.7314 -0.8905 34 1 3.8007 -6.1835 -0.0006 35 1 1.0993 -9.8209 1.2501 36 1 2.4698 -10.4233 2.2329 37 1 4.5951 -12.0216 1.9924 38 1 3.3620 -11.7087 3.2596 39 1 3.5540 -13.9372 4.1570 40 1 5.2494 -13.6607 3.6316 41 1 3.8830 -15.7780 2.6348 42 1 4.9102 -14.7997 1.5437 43 1 1.5732 -9.9400 -1.4108 44 1 3.1878 -10.6029 -1.8065 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001688090831.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:23:08 Heat of formation + Delta-G solvation = -97.669540 kcal Electronic energy + Delta-G solvation = -26193.354983 eV Core-core repulsion = 22237.244137 eV Total energy + Delta-G solvation = -3956.110846 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.85119 -40.89155 -39.93894 -38.80877 -35.90193 -34.57161 -33.80875 -33.03117 -31.19191 -30.44540 -29.23366 -27.67962 -26.87614 -24.13928 -22.74512 -22.60403 -21.85441 -21.29511 -20.49277 -19.80704 -18.74955 -17.92515 -17.86333 -17.47701 -16.90792 -16.86465 -16.71903 -16.39053 -16.20954 -16.01590 -15.00197 -14.94220 -14.78425 -14.55524 -14.41240 -14.16320 -13.91447 -13.80388 -13.65396 -13.42188 -13.15193 -12.96667 -12.88894 -12.77424 -12.60349 -12.57145 -12.16279 -12.00849 -11.90905 -11.73395 -11.40960 -11.14510 -11.13109 -10.98736 -10.41877 -10.25967 -9.91726 -9.82983 -8.64833 -8.33599 -6.11181 1.24791 1.39586 1.43484 1.47034 1.51024 1.56255 1.65909 2.15003 2.28621 2.55974 2.85141 3.00908 3.28909 3.30238 3.45961 3.54323 3.61495 3.68440 3.82190 3.91780 3.92482 4.07454 4.14028 4.16526 4.32310 4.35445 4.38816 4.53002 4.57101 4.69095 4.72178 4.74038 4.75926 4.87938 4.92579 4.96096 5.02631 5.08885 5.18797 5.43515 5.45477 5.84518 6.21068 6.38178 6.45264 6.98591 7.08186 7.20725 8.75429 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.035442 B = 0.001678 C = 0.001654 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 789.834988 B =16682.815424 C =16926.478301 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.014 3.986 3 Si 0.997 3.003 4 H -0.269 1.269 5 H -0.279 1.279 6 H -0.257 1.257 7 C -0.546 4.546 8 H 0.084 0.916 9 S -0.150 6.150 10 C -0.130 4.130 11 C 0.542 3.458 12 O -0.560 6.560 13 N -0.683 5.683 14 C 0.105 3.895 15 H 0.118 0.882 16 C -0.159 4.159 17 H 0.153 0.847 18 C 0.120 3.880 19 N -0.617 5.617 20 C 0.518 3.482 21 O -0.580 6.580 22 C 0.067 3.933 23 H 0.128 0.872 24 C -0.140 4.140 25 C -0.144 4.144 26 C 0.035 3.965 27 O -0.387 6.387 28 C 0.129 3.871 29 C -0.172 4.172 30 H 0.138 0.862 31 H 0.271 0.729 32 H 0.114 0.886 33 H 0.111 0.889 34 H 0.420 0.580 35 H 0.088 0.912 36 H 0.118 0.882 37 H 0.076 0.924 38 H 0.125 0.875 39 H 0.099 0.901 40 H 0.105 0.895 41 H 0.105 0.895 42 H 0.052 0.948 43 H 0.077 0.923 44 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.257 -25.691 8.890 30.245 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.191 4.191 3 Si 0.819 3.181 4 H -0.195 1.195 5 H -0.204 1.204 6 H -0.181 1.181 7 C -0.694 4.694 8 H 0.102 0.898 9 S 0.077 5.923 10 C -0.281 4.281 11 C 0.328 3.672 12 O -0.437 6.437 13 N -0.335 5.335 14 C -0.002 4.002 15 H 0.136 0.864 16 C -0.180 4.180 17 H 0.171 0.829 18 C -0.001 4.001 19 N -0.352 5.352 20 C 0.308 3.692 21 O -0.459 6.459 22 C 0.006 3.994 23 H 0.145 0.855 24 C -0.178 4.178 25 C -0.182 4.182 26 C -0.041 4.041 27 O -0.306 6.306 28 C 0.006 3.994 29 C -0.193 4.193 30 H 0.156 0.844 31 H 0.080 0.920 32 H 0.132 0.868 33 H 0.129 0.871 34 H 0.257 0.743 35 H 0.106 0.894 36 H 0.136 0.864 37 H 0.095 0.905 38 H 0.143 0.857 39 H 0.118 0.882 40 H 0.123 0.877 41 H 0.123 0.877 42 H 0.070 0.930 43 H 0.095 0.905 44 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 11.172 -26.552 8.257 29.967 hybrid contribution 1.963 1.459 -0.540 2.505 sum 13.135 -25.093 7.716 29.356 Atomic orbital electron populations 1.70179 1.07948 1.28577 1.48027 1.26105 0.95938 1.03275 0.93793 0.84971 0.78256 0.76151 0.78718 1.19474 1.20410 1.18113 1.23215 0.95397 0.92026 1.58787 0.89804 1.85591 1.10433 0.99185 1.97060 1.23371 1.03650 0.94021 1.07070 1.20029 0.86142 0.86453 0.74557 1.90702 1.17377 1.85922 1.49709 1.44996 1.10241 1.03394 1.74875 1.21613 0.97657 0.78363 1.02543 0.86418 1.25023 1.03272 0.96588 0.93092 0.82923 1.22763 0.99418 0.86350 0.91615 1.49214 1.68382 1.06505 1.11053 1.21342 0.75499 0.80272 0.92091 1.90698 1.49716 1.64669 1.40777 1.22831 1.03408 0.82276 0.90923 0.85468 1.23219 0.96936 0.99920 0.97727 1.23296 1.04626 0.92278 0.97973 1.23712 0.87352 1.00224 0.92769 1.88502 1.47190 1.20999 1.73886 1.21748 1.01183 0.88325 0.88098 1.24010 1.02187 0.95276 0.97807 0.84420 0.92029 0.86799 0.87099 0.74272 0.89352 0.86376 0.90548 0.85723 0.88240 0.87688 0.87731 0.93000 0.90454 0.90321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -54.93 13.22 21.65 0.29 -54.65 16 2 C 0.01 0.76 5.49 84.86 0.47 1.23 16 3 Si 1.00 42.55 29.55 68.60 2.03 44.58 16 4 H -0.27 -11.10 7.11 99.48 0.71 -10.39 16 5 H -0.28 -11.65 7.11 99.48 0.71 -10.94 16 6 H -0.26 -10.24 7.11 99.48 0.71 -9.53 16 7 C -0.55 -30.27 9.50 67.95 0.65 -29.62 16 8 H 0.08 4.28 7.80 -2.91 -0.02 4.26 16 9 S -0.15 -8.00 20.57 -56.49 -1.16 -9.16 16 10 C -0.13 -4.73 6.16 71.24 0.44 -4.30 16 11 C 0.54 18.00 7.85 87.66 0.69 18.69 16 12 O -0.56 -24.04 15.43 -3.02 -0.05 -24.08 16 13 N -0.68 -14.35 5.56 -442.53 -2.46 -16.81 16 14 C 0.11 1.92 5.92 45.00 0.27 2.19 16 15 H 0.12 2.75 7.40 -2.39 -0.02 2.74 16 16 C -0.16 -1.78 7.34 -8.69 -0.06 -1.84 16 17 H 0.15 1.12 8.14 -2.39 -0.02 1.10 16 18 C 0.12 1.21 6.65 87.73 0.58 1.80 16 19 N -0.62 -10.03 3.32 -801.20 -2.66 -12.69 16 20 C 0.52 11.07 7.14 87.66 0.63 11.69 16 21 O -0.58 -18.47 16.79 15.76 0.26 -18.21 16 22 C 0.07 0.96 3.35 30.32 0.10 1.07 16 23 H 0.13 1.29 8.14 -2.38 -0.02 1.27 16 24 C -0.14 -0.97 5.47 31.86 0.17 -0.80 16 25 C -0.14 -0.79 7.16 32.05 0.23 -0.56 16 26 C 0.04 0.43 7.78 72.65 0.56 0.99 16 27 O -0.39 -7.83 10.56 -130.19 -1.38 -9.20 16 28 C 0.13 2.21 6.85 86.53 0.59 2.80 16 29 C -0.17 -2.36 6.98 -9.89 -0.07 -2.43 16 30 H 0.14 1.56 8.14 -2.39 -0.02 1.54 16 31 H 0.27 15.18 8.31 -92.71 -0.77 14.40 16 32 H 0.11 3.64 8.14 -2.39 -0.02 3.63 16 33 H 0.11 3.62 8.14 -2.40 -0.02 3.60 16 34 H 0.42 5.83 8.83 -92.71 -0.82 5.01 16 35 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 36 H 0.12 0.49 5.30 -2.39 -0.01 0.48 16 37 H 0.08 0.67 7.84 -2.39 -0.02 0.65 16 38 H 0.12 0.13 6.81 -2.39 -0.02 0.11 16 39 H 0.10 0.28 8.14 -2.39 -0.02 0.26 16 40 H 0.10 0.26 8.14 -2.39 -0.02 0.24 16 41 H 0.10 0.92 8.14 -2.39 -0.02 0.90 16 42 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 43 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 44 H 0.08 1.55 7.88 -2.39 -0.02 1.53 16 Total: -1.00 -85.84 379.70 0.33 -85.51 By element: Atomic # 1 Polarization: 13.59 SS G_CDS: 0.21 Total: 13.80 kcal Atomic # 6 Polarization: -4.33 SS G_CDS: 5.24 Total: 0.92 kcal Atomic # 7 Polarization: -79.32 SS G_CDS: -4.83 Total: -84.15 kcal Atomic # 8 Polarization: -50.33 SS G_CDS: -1.16 Total: -51.49 kcal Atomic # 14 Polarization: 42.55 SS G_CDS: 2.03 Total: 44.58 kcal Atomic # 16 Polarization: -8.00 SS G_CDS: -1.16 Total: -9.16 kcal Total: -85.84 0.33 -85.51 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001688090831.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.158 kcal (2) G-P(sol) polarization free energy of solvation -85.840 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.999 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.329 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.511 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.670 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds