Wall clock time and date at job start Tue Mar 31 2020 23:46:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86797 * 120.00204 * 2 1 4 4 H 1.48508 * 109.46917 * 239.99796 * 3 2 1 5 5 H 1.48500 * 109.47087 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47480 * 119.99680 * 3 2 1 7 7 C 1.38799 * 119.99906 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00352 * 180.02562 * 7 2 1 9 9 S 1.76198 * 119.99987 * 0.02562 * 7 2 1 10 10 C 1.81007 * 100.00025 * 179.97438 * 9 7 2 11 11 C 1.50701 * 109.46991 * 179.97438 * 10 9 7 12 12 O 1.21283 * 120.00145 * 359.97438 * 11 10 9 13 13 N 1.34780 * 119.99670 * 180.02562 * 11 10 9 14 14 C 1.46504 * 119.99688 * 180.02562 * 13 11 10 15 15 C 1.52992 * 109.47049 * 184.98292 * 14 13 11 16 16 H 1.09002 * 112.73774 * 314.84828 * 15 14 13 17 17 C 1.53499 * 113.46942 * 85.66478 * 15 14 13 18 18 C 1.53242 * 83.42927 * 140.68236 * 17 15 14 19 19 N 1.47069 * 113.47030 * 184.10472 * 15 14 13 20 20 C 1.34773 * 136.05644 * 38.05680 * 19 15 14 21 21 O 1.21279 * 120.00000 * 355.01939 * 20 19 15 22 22 C 1.50694 * 119.99958 * 175.01676 * 20 19 15 23 23 H 1.08996 * 115.48465 * 325.33061 * 22 20 19 24 24 C 1.55606 * 117.96037 * 111.14048 * 22 20 19 25 25 H 1.08998 * 120.87309 * 355.57454 * 24 22 20 26 26 C 1.54473 * 118.08232 * 197.34400 * 24 22 20 27 27 O 1.44422 * 104.80563 * 273.79391 * 26 24 22 28 28 C 1.44428 * 105.27374 * 40.51564 * 27 26 24 29 29 C 1.52999 * 117.43604 * 180.02562 * 22 20 19 30 30 H 1.09000 * 119.80641 * 4.63577 * 29 22 20 31 31 H 0.97000 * 119.99845 * 0.02562 * 1 2 3 32 32 H 1.08996 * 109.46845 * 59.99987 * 10 9 7 33 33 H 1.08993 * 109.47114 * 299.99926 * 10 9 7 34 34 H 0.96996 * 120.00157 * 0.02562 * 13 11 10 35 35 H 1.08996 * 109.47249 * 64.98208 * 14 13 11 36 36 H 1.09008 * 109.46827 * 304.97808 * 14 13 11 37 37 H 1.09000 * 114.20749 * 254.43525 * 17 15 14 38 38 H 1.09000 * 114.20617 * 27.06757 * 17 15 14 39 39 H 1.09004 * 113.38118 * 219.29828 * 18 17 15 40 40 H 1.08990 * 113.47127 * 88.92954 * 18 17 15 41 41 H 1.09001 * 110.36956 * 154.96459 * 26 24 22 42 42 H 1.09000 * 110.47123 * 32.67829 * 26 24 22 43 43 H 1.08998 * 110.37337 * 200.65406 * 28 27 26 44 44 H 1.09000 * 110.37005 * 78.31712 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1041 1.6962 -1.2126 5 1 1.2853 2.7464 -0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0102 -1.2020 0.0005 8 1 3.0903 -1.2021 0.0010 9 16 1.1292 -2.7279 0.0005 10 6 2.5158 -3.8915 0.0005 11 6 1.9873 -5.3028 0.0012 12 8 0.7910 -5.5023 0.0021 13 7 2.8440 -6.3432 0.0018 14 6 2.3302 -7.7152 0.0019 15 6 3.4970 -8.6967 0.1279 16 1 4.3315 -8.4454 -0.5268 17 6 3.9167 -8.9642 1.5800 18 6 4.0851 -10.4032 1.0808 19 7 3.0883 -10.1067 0.0408 20 6 2.1910 -10.8147 -0.6734 21 8 1.4208 -10.2436 -1.4160 22 6 2.1447 -12.3158 -0.5491 23 1 3.1072 -12.8035 -0.3950 24 6 0.9046 -12.9528 0.1419 25 1 0.1301 -12.3283 0.5870 26 6 1.0182 -14.4109 0.6390 27 8 0.6784 -15.2195 -0.5084 28 6 1.3133 -14.5712 -1.6321 29 6 1.1036 -13.0607 -1.3870 30 1 0.4850 -12.5110 -2.0964 31 1 -0.4850 0.8401 -0.0004 32 1 3.1244 -3.7314 0.8905 33 1 3.1244 -3.7314 -0.8894 34 1 3.8008 -6.1836 0.0022 35 1 1.7963 -7.9032 -0.9296 36 1 1.6507 -7.8486 0.8437 37 1 4.8476 -8.4788 1.8728 38 1 3.1157 -8.8346 2.3078 39 1 3.7526 -11.1522 1.7997 40 1 5.0783 -10.6114 0.6833 41 1 0.3143 -14.5907 1.4516 42 1 2.0360 -14.6242 0.9655 43 1 0.8361 -14.8741 -2.5642 44 1 2.3771 -14.8076 -1.6551 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001689509227.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:46:08 Heat of formation + Delta-G solvation = -37.972772 kcal Electronic energy + Delta-G solvation = -26042.022777 eV Core-core repulsion = 22088.500577 eV Total energy + Delta-G solvation = -3953.522200 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.32573 -40.43820 -38.98009 -38.09831 -34.93630 -34.42478 -32.41982 -30.73140 -29.91774 -29.25383 -27.78032 -26.46607 -25.46713 -23.43993 -23.32805 -21.62322 -21.07295 -20.49495 -19.24406 -18.05092 -17.75871 -16.94057 -16.59667 -16.30076 -16.07348 -15.67403 -15.55064 -15.24422 -15.11801 -14.79608 -14.41868 -14.07549 -13.88003 -13.68066 -13.37232 -13.14921 -13.07524 -12.91561 -12.54789 -12.37741 -12.32459 -12.10109 -11.95811 -11.73450 -11.06552 -11.03606 -11.02737 -10.93736 -10.77226 -10.75510 -10.22023 -10.11650 -9.81878 -9.40936 -9.18474 -9.05530 -8.87202 -8.22401 -6.48959 -6.20381 -3.91160 1.91127 2.15218 3.02874 3.07395 3.11872 3.23905 3.28307 3.32489 3.46948 3.63583 3.76393 3.87030 4.00553 4.17688 4.21313 4.35693 4.40738 4.43423 4.52688 4.58091 4.69443 4.79009 4.83237 4.90018 5.00462 5.13739 5.14481 5.18107 5.18736 5.29683 5.32067 5.48139 5.54674 5.61709 5.65567 5.74788 5.90294 6.01600 6.13822 6.15591 6.57215 7.25812 7.59889 7.68381 7.75329 8.35835 8.62681 9.24491 10.86982 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.029850 B = 0.001732 C = 0.001677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 937.812809 B =16161.282354 C =16696.808510 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.073 3.927 3 Si 0.919 3.081 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.274 1.274 7 C -0.536 4.536 8 H 0.072 0.928 9 S -0.060 6.060 10 C -0.152 4.152 11 C 0.532 3.468 12 O -0.514 6.514 13 N -0.737 5.737 14 C 0.116 3.884 15 C 0.125 3.875 16 H 0.101 0.899 17 C -0.151 4.151 18 C 0.100 3.900 19 N -0.639 5.639 20 C 0.571 3.429 21 O -0.522 6.522 22 C -0.143 4.143 23 H 0.123 0.877 24 C -0.168 4.168 25 H 0.131 0.869 26 C 0.074 3.926 27 O -0.370 6.370 28 C 0.073 3.927 29 C -0.158 4.158 30 H 0.136 0.864 31 H 0.269 0.731 32 H 0.090 0.910 33 H 0.090 0.910 34 H 0.397 0.603 35 H 0.080 0.920 36 H 0.072 0.928 37 H 0.096 0.904 38 H 0.100 0.900 39 H 0.082 0.918 40 H 0.088 0.912 41 H 0.103 0.897 42 H 0.065 0.935 43 H 0.103 0.897 44 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.711 -30.060 3.051 32.779 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.136 4.136 3 Si 0.745 3.255 4 H -0.200 1.200 5 H -0.208 1.208 6 H -0.199 1.199 7 C -0.685 4.685 8 H 0.090 0.910 9 S 0.167 5.833 10 C -0.303 4.303 11 C 0.318 3.682 12 O -0.388 6.388 13 N -0.392 5.392 14 C -0.009 4.009 15 C 0.021 3.979 16 H 0.119 0.881 17 C -0.189 4.189 18 C -0.023 4.023 19 N -0.376 5.376 20 C 0.360 3.640 21 O -0.397 6.397 22 C -0.165 4.165 23 H 0.141 0.859 24 C -0.187 4.187 25 H 0.149 0.851 26 C -0.002 4.002 27 O -0.289 6.289 28 C -0.004 4.004 29 C -0.176 4.176 30 H 0.154 0.846 31 H 0.079 0.921 32 H 0.108 0.892 33 H 0.108 0.892 34 H 0.231 0.769 35 H 0.098 0.902 36 H 0.091 0.909 37 H 0.115 0.885 38 H 0.119 0.881 39 H 0.101 0.899 40 H 0.106 0.894 41 H 0.121 0.879 42 H 0.083 0.917 43 H 0.122 0.878 44 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 9.785 -30.337 2.499 31.974 hybrid contribution 2.722 1.596 -0.068 3.156 sum 12.507 -28.741 2.431 31.439 Atomic orbital electron populations 1.70010 1.05957 1.27564 1.46723 1.24994 0.95029 0.99023 0.94551 0.86221 0.79226 0.81251 0.78767 1.19956 1.20814 1.19949 1.22827 0.94869 0.91676 1.59097 0.90966 1.85447 1.04895 0.96278 1.96717 1.23521 1.06580 0.95245 1.04926 1.20312 0.86512 0.86192 0.75216 1.90723 1.15389 1.85513 1.47126 1.45844 1.09867 1.05163 1.78364 1.21432 0.95124 0.80319 1.03980 1.22918 0.96528 0.81937 0.96508 0.88124 1.23538 1.03662 0.95719 0.95935 1.22951 0.92257 0.98464 0.88588 1.49561 1.37079 1.09819 1.41103 1.19038 0.79401 0.87069 0.78495 1.90786 1.39787 1.71233 1.37866 1.22685 0.96134 0.91891 1.05745 0.85902 1.24652 0.99172 0.98510 0.96377 0.85100 1.22953 1.01319 0.86242 0.89729 1.89217 1.74006 1.49343 1.16331 1.22978 0.98090 0.88235 0.91083 1.24262 1.01642 0.96725 0.95018 0.84584 0.92123 0.89169 0.89195 0.76931 0.90167 0.90929 0.88548 0.88102 0.89917 0.89386 0.87888 0.91667 0.87840 0.91697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.36 13.22 55.49 0.73 -25.63 16 2 C 0.07 2.11 5.49 -17.43 -0.10 2.01 16 3 Si 0.92 21.44 29.55 -169.99 -5.02 16.42 16 4 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 5 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 6 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 7 C -0.54 -15.35 9.50 30.94 0.29 -15.05 16 8 H 0.07 1.94 7.80 -52.48 -0.41 1.53 16 9 S -0.06 -1.65 20.57 -107.50 -2.21 -3.86 16 10 C -0.15 -3.07 6.16 36.01 0.22 -2.85 16 11 C 0.53 10.17 7.85 -10.98 -0.09 10.09 16 12 O -0.51 -12.26 15.86 5.56 0.09 -12.18 16 13 N -0.74 -9.87 5.55 -60.29 -0.33 -10.21 16 14 C 0.12 1.51 5.39 -4.04 -0.02 1.48 16 15 C 0.12 1.02 4.09 -72.39 -0.30 0.73 16 16 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 17 C -0.15 -0.78 8.00 -26.35 -0.21 -0.99 16 18 C 0.10 0.43 8.41 -8.63 -0.07 0.36 16 19 N -0.64 -5.41 3.57 -177.59 -0.63 -6.04 16 20 C 0.57 6.17 7.83 -10.99 -0.09 6.09 16 21 O -0.52 -8.04 15.72 5.56 0.09 -7.95 16 22 C -0.14 -1.07 5.66 -90.39 -0.51 -1.58 16 23 H 0.12 0.63 8.14 -51.93 -0.42 0.20 16 24 C -0.17 -1.22 7.07 -87.64 -0.62 -1.84 16 25 H 0.13 1.03 8.14 -51.93 -0.42 0.61 16 26 C 0.07 0.44 7.45 37.93 0.28 0.72 16 27 O -0.37 -3.07 11.65 -35.23 -0.41 -3.48 16 28 C 0.07 0.47 7.43 37.92 0.28 0.75 16 29 C -0.16 -1.25 6.56 -89.04 -0.58 -1.84 16 30 H 0.14 1.29 7.81 -51.93 -0.41 0.88 16 31 H 0.27 7.61 8.31 -40.82 -0.34 7.27 16 32 H 0.09 1.64 8.14 -51.92 -0.42 1.22 16 33 H 0.09 1.67 8.14 -51.92 -0.42 1.25 16 34 H 0.40 3.80 8.48 -40.82 -0.35 3.46 16 35 H 0.08 1.32 7.05 -51.93 -0.37 0.96 16 36 H 0.07 1.05 7.89 -51.92 -0.41 0.64 16 37 H 0.10 0.31 8.14 -51.93 -0.42 -0.12 16 38 H 0.10 0.63 7.95 -51.93 -0.41 0.21 16 39 H 0.08 0.25 8.14 -51.93 -0.42 -0.17 16 40 H 0.09 0.21 8.14 -51.93 -0.42 -0.21 16 41 H 0.10 0.49 8.14 -51.93 -0.42 0.06 16 42 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 43 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 44 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 LS Contribution 386.89 15.07 5.83 5.83 Total: -1.00 -38.88 386.89 -9.94 -48.81 By element: Atomic # 1 Polarization: 6.76 SS G_CDS: -6.56 Total: 0.21 kcal Atomic # 6 Polarization: -0.42 SS G_CDS: -1.50 Total: -1.92 kcal Atomic # 7 Polarization: -41.64 SS G_CDS: -0.23 Total: -41.88 kcal Atomic # 8 Polarization: -23.37 SS G_CDS: -0.24 Total: -23.61 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Atomic # 16 Polarization: -1.65 SS G_CDS: -2.21 Total: -3.86 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -38.88 -9.94 -48.81 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001689509227.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.839 kcal (2) G-P(sol) polarization free energy of solvation -38.876 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.936 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.812 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.973 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds