Wall clock time and date at job start Tue Mar 31 2020 23:46:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86797 * 120.00204 * 2 1 4 4 H 1.48508 * 109.46917 * 239.99796 * 3 2 1 5 5 H 1.48500 * 109.47087 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47480 * 119.99680 * 3 2 1 7 7 C 1.38799 * 119.99906 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00352 * 180.02562 * 7 2 1 9 9 S 1.76198 * 119.99987 * 0.02562 * 7 2 1 10 10 C 1.81007 * 100.00025 * 179.97438 * 9 7 2 11 11 C 1.50701 * 109.46991 * 179.97438 * 10 9 7 12 12 O 1.21283 * 120.00145 * 359.97438 * 11 10 9 13 13 N 1.34780 * 119.99670 * 180.02562 * 11 10 9 14 14 C 1.46504 * 119.99688 * 180.02562 * 13 11 10 15 15 C 1.52992 * 109.47049 * 184.98292 * 14 13 11 16 16 H 1.09002 * 112.73774 * 314.84828 * 15 14 13 17 17 C 1.53499 * 113.46942 * 85.66478 * 15 14 13 18 18 C 1.53242 * 83.42927 * 140.68236 * 17 15 14 19 19 N 1.47069 * 113.47030 * 184.10472 * 15 14 13 20 20 C 1.34773 * 136.05644 * 38.05680 * 19 15 14 21 21 O 1.21279 * 120.00000 * 355.01939 * 20 19 15 22 22 C 1.50694 * 119.99958 * 175.01676 * 20 19 15 23 23 H 1.08996 * 115.48465 * 325.33061 * 22 20 19 24 24 C 1.55606 * 117.96037 * 111.14048 * 22 20 19 25 25 H 1.08998 * 120.87309 * 355.57454 * 24 22 20 26 26 C 1.54473 * 118.08232 * 197.34400 * 24 22 20 27 27 O 1.44422 * 104.80563 * 273.79391 * 26 24 22 28 28 C 1.44428 * 105.27374 * 40.51564 * 27 26 24 29 29 C 1.52999 * 117.43604 * 180.02562 * 22 20 19 30 30 H 1.09000 * 119.80641 * 4.63577 * 29 22 20 31 31 H 0.97000 * 119.99845 * 0.02562 * 1 2 3 32 32 H 1.08996 * 109.46845 * 59.99987 * 10 9 7 33 33 H 1.08993 * 109.47114 * 299.99926 * 10 9 7 34 34 H 0.96996 * 120.00157 * 0.02562 * 13 11 10 35 35 H 1.08996 * 109.47249 * 64.98208 * 14 13 11 36 36 H 1.09008 * 109.46827 * 304.97808 * 14 13 11 37 37 H 1.09000 * 114.20749 * 254.43525 * 17 15 14 38 38 H 1.09000 * 114.20617 * 27.06757 * 17 15 14 39 39 H 1.09004 * 113.38118 * 219.29828 * 18 17 15 40 40 H 1.08990 * 113.47127 * 88.92954 * 18 17 15 41 41 H 1.09001 * 110.36956 * 154.96459 * 26 24 22 42 42 H 1.09000 * 110.47123 * 32.67829 * 26 24 22 43 43 H 1.08998 * 110.37337 * 200.65406 * 28 27 26 44 44 H 1.09000 * 110.37005 * 78.31712 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1041 1.6962 -1.2126 5 1 1.2853 2.7464 -0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0102 -1.2020 0.0005 8 1 3.0903 -1.2021 0.0010 9 16 1.1292 -2.7279 0.0005 10 6 2.5158 -3.8915 0.0005 11 6 1.9873 -5.3028 0.0012 12 8 0.7910 -5.5023 0.0021 13 7 2.8440 -6.3432 0.0018 14 6 2.3302 -7.7152 0.0019 15 6 3.4970 -8.6967 0.1279 16 1 4.3315 -8.4454 -0.5268 17 6 3.9167 -8.9642 1.5800 18 6 4.0851 -10.4032 1.0808 19 7 3.0883 -10.1067 0.0408 20 6 2.1910 -10.8147 -0.6734 21 8 1.4208 -10.2436 -1.4160 22 6 2.1447 -12.3158 -0.5491 23 1 3.1072 -12.8035 -0.3950 24 6 0.9046 -12.9528 0.1419 25 1 0.1301 -12.3283 0.5870 26 6 1.0182 -14.4109 0.6390 27 8 0.6784 -15.2195 -0.5084 28 6 1.3133 -14.5712 -1.6321 29 6 1.1036 -13.0607 -1.3870 30 1 0.4850 -12.5110 -2.0964 31 1 -0.4850 0.8401 -0.0004 32 1 3.1244 -3.7314 0.8905 33 1 3.1244 -3.7314 -0.8894 34 1 3.8008 -6.1836 0.0022 35 1 1.7963 -7.9032 -0.9296 36 1 1.6507 -7.8486 0.8437 37 1 4.8476 -8.4788 1.8728 38 1 3.1157 -8.8346 2.3078 39 1 3.7526 -11.1522 1.7997 40 1 5.0783 -10.6114 0.6833 41 1 0.3143 -14.5907 1.4516 42 1 2.0360 -14.6242 0.9655 43 1 0.8361 -14.8741 -2.5642 44 1 2.3771 -14.8076 -1.6551 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001689509227.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:46:07 Heat of formation + Delta-G solvation = -68.159229 kcal Electronic energy + Delta-G solvation = -26043.331760 eV Core-core repulsion = 22088.500577 eV Total energy + Delta-G solvation = -3954.831183 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.98854 -41.10221 -40.39226 -38.92037 -35.82096 -35.51733 -34.58709 -31.85255 -30.95892 -29.72765 -28.85724 -27.64385 -27.05407 -24.23560 -23.86502 -22.22460 -21.91993 -21.64236 -20.11295 -19.71135 -18.58057 -17.91448 -17.76473 -17.33122 -16.88118 -16.82065 -16.60026 -16.33124 -16.19148 -16.09218 -15.69962 -15.20164 -15.00197 -14.67348 -14.54209 -14.26756 -14.01306 -13.62790 -13.60079 -13.49750 -13.17584 -12.94975 -12.89595 -12.85166 -12.63599 -12.61451 -12.43968 -11.80909 -11.68499 -11.50900 -11.36577 -11.12913 -11.08271 -10.89663 -10.69648 -10.28348 -10.20766 -9.85634 -8.68759 -8.34461 -6.13729 1.17679 1.22291 1.41608 1.44540 1.52221 1.55436 1.62487 2.26917 2.30855 2.40580 2.97910 2.99629 3.12332 3.31261 3.36442 3.43972 3.59468 3.67501 3.83169 3.91360 3.95967 3.97970 4.00826 4.05980 4.29458 4.35563 4.38968 4.46779 4.49013 4.64373 4.65496 4.70727 4.72969 4.77067 4.91563 4.93223 5.00072 5.00893 5.24060 5.34159 5.41395 5.68848 6.19542 6.44757 6.60352 6.97768 7.06281 7.20129 8.74648 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.029850 B = 0.001732 C = 0.001677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 937.812809 B =16161.282354 C =16696.808510 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C 0.011 3.989 3 Si 1.001 2.999 4 H -0.262 1.262 5 H -0.280 1.280 6 H -0.259 1.259 7 C -0.545 4.545 8 H 0.086 0.914 9 S -0.160 6.160 10 C -0.125 4.125 11 C 0.531 3.469 12 O -0.571 6.571 13 N -0.704 5.704 14 C 0.122 3.878 15 C 0.119 3.881 16 H 0.127 0.873 17 C -0.139 4.139 18 C 0.106 3.894 19 N -0.643 5.643 20 C 0.558 3.442 21 O -0.586 6.586 22 C -0.128 4.128 23 H 0.159 0.841 24 C -0.167 4.167 25 H 0.114 0.886 26 C 0.078 3.922 27 O -0.393 6.393 28 C 0.078 3.922 29 C -0.175 4.175 30 H 0.108 0.892 31 H 0.271 0.729 32 H 0.118 0.882 33 H 0.112 0.888 34 H 0.422 0.578 35 H 0.039 0.961 36 H 0.051 0.949 37 H 0.130 0.870 38 H 0.087 0.913 39 H 0.101 0.899 40 H 0.122 0.878 41 H 0.112 0.888 42 H 0.092 0.908 43 H 0.107 0.893 44 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.466 -31.236 4.366 36.053 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.194 4.194 3 Si 0.823 3.177 4 H -0.186 1.186 5 H -0.206 1.206 6 H -0.184 1.184 7 C -0.693 4.693 8 H 0.105 0.895 9 S 0.067 5.933 10 C -0.276 4.276 11 C 0.317 3.683 12 O -0.449 6.449 13 N -0.359 5.359 14 C -0.003 4.003 15 C 0.016 3.984 16 H 0.145 0.855 17 C -0.176 4.176 18 C -0.014 4.014 19 N -0.378 5.378 20 C 0.349 3.651 21 O -0.466 6.466 22 C -0.149 4.149 23 H 0.176 0.824 24 C -0.186 4.186 25 H 0.132 0.868 26 C 0.002 3.998 27 O -0.313 6.313 28 C 0.002 3.998 29 C -0.194 4.194 30 H 0.126 0.874 31 H 0.080 0.920 32 H 0.136 0.864 33 H 0.131 0.869 34 H 0.260 0.740 35 H 0.057 0.943 36 H 0.070 0.930 37 H 0.148 0.852 38 H 0.105 0.895 39 H 0.119 0.881 40 H 0.139 0.861 41 H 0.130 0.870 42 H 0.110 0.890 43 H 0.125 0.875 44 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 14.648 -31.556 3.854 35.003 hybrid contribution 1.258 1.891 -0.469 2.320 sum 15.907 -29.665 3.385 33.830 Atomic orbital electron populations 1.70193 1.08102 1.28674 1.47978 1.26182 0.95974 1.03487 0.93713 0.84965 0.77742 0.75452 0.79584 1.18638 1.20564 1.18376 1.23178 0.95427 0.91728 1.58949 0.89550 1.85713 1.10909 0.99592 1.97091 1.23341 1.03448 0.93542 1.07256 1.20224 0.86150 0.86942 0.74938 1.90713 1.17929 1.86183 1.50111 1.45465 1.10491 1.04248 1.75728 1.21375 0.97068 0.80875 1.00964 1.23183 0.94806 0.80648 0.99806 0.85508 1.23534 1.04511 0.96597 0.93007 1.23271 0.92477 0.98296 0.87354 1.49800 1.37059 1.09967 1.40996 1.19697 0.79049 0.88522 0.77881 1.90760 1.42408 1.72635 1.40787 1.22684 0.97492 0.89703 1.05029 0.82387 1.24673 0.98775 0.99316 0.95824 0.86775 1.23098 1.03152 0.84419 0.89175 1.89193 1.74750 1.49930 1.17384 1.23047 0.99375 0.86525 0.90878 1.24242 1.02267 0.97798 0.95072 0.87435 0.92034 0.86358 0.86947 0.74030 0.94299 0.93011 0.85211 0.89482 0.88065 0.86059 0.86986 0.89010 0.87453 0.89351 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.87 13.22 21.65 0.29 -56.59 16 2 C 0.01 0.63 5.49 84.86 0.47 1.10 16 3 Si 1.00 43.59 29.55 68.60 2.03 45.62 16 4 H -0.26 -10.79 7.11 99.48 0.71 -10.08 16 5 H -0.28 -11.97 7.11 99.48 0.71 -11.26 16 6 H -0.26 -10.59 7.11 99.48 0.71 -9.88 16 7 C -0.55 -31.22 9.50 67.95 0.65 -30.57 16 8 H 0.09 4.52 7.80 -2.91 -0.02 4.49 16 9 S -0.16 -9.08 20.57 -56.49 -1.16 -10.24 16 10 C -0.12 -4.94 6.16 71.24 0.44 -4.50 16 11 C 0.53 20.50 7.85 87.66 0.69 21.19 16 12 O -0.57 -28.71 15.86 -3.04 -0.05 -28.76 16 13 N -0.70 -18.14 5.55 -463.05 -2.57 -20.71 16 14 C 0.12 3.23 5.39 86.38 0.47 3.70 16 15 C 0.12 1.70 4.09 41.79 0.17 1.87 16 16 H 0.13 1.21 8.14 -2.39 -0.02 1.20 16 17 C -0.14 -0.91 8.00 30.84 0.25 -0.66 16 18 C 0.11 0.43 8.41 83.09 0.70 1.13 16 19 N -0.64 -9.78 3.57 -834.17 -2.98 -12.75 16 20 C 0.56 12.19 7.83 87.66 0.69 12.88 16 21 O -0.59 -19.66 15.72 -3.03 -0.05 -19.71 16 22 C -0.13 -1.77 5.66 -10.64 -0.06 -1.83 16 23 H 0.16 1.01 8.14 -2.39 -0.02 0.99 16 24 C -0.17 -2.36 7.07 -8.86 -0.06 -2.43 16 25 H 0.11 1.96 8.14 -2.39 -0.02 1.94 16 26 C 0.08 0.77 7.45 72.48 0.54 1.31 16 27 O -0.39 -5.99 11.65 -148.98 -1.74 -7.73 16 28 C 0.08 0.92 7.43 72.48 0.54 1.45 16 29 C -0.17 -2.85 6.56 -9.77 -0.06 -2.91 16 30 H 0.11 2.35 7.81 -2.39 -0.02 2.33 16 31 H 0.27 15.69 8.31 -92.71 -0.77 14.92 16 32 H 0.12 4.04 8.14 -2.40 -0.02 4.02 16 33 H 0.11 3.97 8.14 -2.40 -0.02 3.95 16 34 H 0.42 6.75 8.48 -92.71 -0.79 5.96 16 35 H 0.04 1.38 7.05 -2.39 -0.02 1.37 16 36 H 0.05 1.58 7.89 -2.38 -0.02 1.56 16 37 H 0.13 0.08 8.14 -2.39 -0.02 0.07 16 38 H 0.09 0.87 7.95 -2.39 -0.02 0.85 16 39 H 0.10 0.13 8.14 -2.38 -0.02 0.11 16 40 H 0.12 -0.17 8.14 -2.39 -0.02 -0.19 16 41 H 0.11 0.87 8.14 -2.39 -0.02 0.86 16 42 H 0.09 0.45 8.14 -2.39 -0.02 0.43 16 43 H 0.11 1.11 8.14 -2.39 -0.02 1.09 16 44 H 0.09 0.63 8.14 -2.39 -0.02 0.61 16 Total: -1.00 -93.23 386.89 -0.60 -93.82 By element: Atomic # 1 Polarization: 15.08 SS G_CDS: 0.23 Total: 15.32 kcal Atomic # 6 Polarization: -3.67 SS G_CDS: 5.40 Total: 1.73 kcal Atomic # 7 Polarization: -84.79 SS G_CDS: -5.26 Total: -90.05 kcal Atomic # 8 Polarization: -54.37 SS G_CDS: -1.83 Total: -56.20 kcal Atomic # 14 Polarization: 43.59 SS G_CDS: 2.03 Total: 45.62 kcal Atomic # 16 Polarization: -9.08 SS G_CDS: -1.16 Total: -10.24 kcal Total: -93.23 -0.60 -93.82 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001689509227.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.664 kcal (2) G-P(sol) polarization free energy of solvation -93.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.564 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.596 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.823 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds