Wall clock time and date at job start Tue Mar 31 2020 23:46:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31630 * 1 3 3 Si 1.86803 * 119.99607 * 2 1 4 4 H 1.48500 * 109.46824 * 269.99375 * 3 2 1 5 5 H 1.48491 * 109.47288 * 30.00158 * 3 2 1 6 6 H 1.48503 * 109.46666 * 150.00343 * 3 2 1 7 7 C 1.38799 * 120.00162 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99767 * 0.02562 * 7 2 1 9 9 S 1.76195 * 119.99964 * 179.97438 * 7 2 1 10 10 C 1.81004 * 99.99917 * 180.02562 * 9 7 2 11 11 C 1.50701 * 109.47099 * 180.02562 * 10 9 7 12 12 O 1.21286 * 119.99984 * 359.97438 * 11 10 9 13 13 N 1.34770 * 120.00194 * 180.02562 * 11 10 9 14 14 C 1.46503 * 120.00222 * 179.97438 * 13 11 10 15 15 C 1.52999 * 109.46884 * 184.98257 * 14 13 11 16 16 H 1.08995 * 112.77994 * 45.09827 * 15 14 13 17 17 C 1.53504 * 113.46883 * 274.30962 * 15 14 13 18 18 C 1.53489 * 83.34416 * 219.15498 * 17 15 14 19 19 N 1.47065 * 87.98914 * 26.07367 * 18 17 15 20 20 C 1.34770 * 136.06276 * 152.91932 * 19 18 17 21 21 O 1.21279 * 120.00066 * 184.92949 * 20 19 18 22 22 C 1.50705 * 120.00030 * 4.91961 * 20 19 18 23 23 H 1.08999 * 115.51025 * 325.38326 * 22 20 19 24 24 C 1.53005 * 117.42693 * 110.65595 * 22 20 19 25 25 H 1.08996 * 119.81280 * 355.37155 * 24 22 20 26 26 C 1.54479 * 118.06383 * 198.08531 * 24 22 20 27 27 O 1.44420 * 104.80481 * 273.17648 * 26 24 22 28 28 C 1.44427 * 105.27540 * 40.51180 * 27 26 24 29 29 C 1.52997 * 117.43144 * 180.02562 * 22 20 19 30 30 H 1.08996 * 119.80864 * 5.65916 * 29 22 20 31 31 H 0.96997 * 120.00229 * 0.02562 * 1 2 3 32 32 H 1.08997 * 109.46841 * 60.00123 * 10 9 7 33 33 H 1.09003 * 109.46785 * 300.00017 * 10 9 7 34 34 H 0.97009 * 119.99864 * 359.97438 * 13 11 10 35 35 H 1.09007 * 109.46753 * 64.98684 * 14 13 11 36 36 H 1.08997 * 109.46939 * 304.98658 * 14 13 11 37 37 H 1.08998 * 114.20739 * 332.75040 * 17 15 14 38 38 H 1.09005 * 114.19857 * 105.56946 * 17 15 14 39 39 H 1.09002 * 113.47495 * 271.28495 * 18 17 15 40 40 H 1.09003 * 113.46752 * 140.85114 * 18 17 15 41 41 H 1.08996 * 110.37361 * 154.34488 * 26 24 22 42 42 H 1.09003 * 110.46241 * 32.05917 * 26 24 22 43 43 H 1.09001 * 110.37293 * 200.65821 * 28 27 26 44 44 H 1.09007 * 110.37186 * 78.31771 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4477 2.6527 0.7000 6 1 3.5478 1.4402 0.7000 7 6 2.0103 -1.2020 0.0005 8 1 1.4703 -2.1374 0.0005 9 16 3.7723 -1.2020 -0.0001 10 6 4.0866 -2.9845 0.0001 11 6 5.5731 -3.2324 0.0002 12 8 6.3441 -2.2962 -0.0003 13 7 6.0458 -4.4945 -0.0001 14 6 7.4909 -4.7356 -0.0005 15 6 7.7574 -6.2369 -0.1261 16 1 7.1424 -6.7123 -0.8902 17 6 7.7400 -6.9755 1.2195 18 6 8.9164 -7.7484 0.6074 19 7 9.1857 -6.5713 -0.2321 20 6 10.2656 -6.0353 -0.8343 21 8 10.1744 -4.9701 -1.4069 22 6 11.5867 -6.7596 -0.7961 23 1 11.7909 -7.3157 0.1188 24 6 12.1050 -7.3500 -2.1091 25 1 11.4870 -7.3029 -3.0057 26 6 13.2019 -8.4353 -2.0350 27 8 14.4451 -7.7014 -1.9970 28 6 14.1956 -6.5749 -1.1282 29 6 12.7740 -6.0977 -1.4984 30 1 12.6660 -5.0980 -1.9191 31 1 -0.4850 0.8400 -0.0004 32 1 3.6434 -3.4317 -0.8896 33 1 3.6440 -3.4313 0.8904 34 1 5.4291 -5.2434 0.0000 35 1 7.9210 -4.3668 0.9308 36 1 7.9459 -4.2140 -0.8425 37 1 8.0092 -6.3544 2.0737 38 1 6.8476 -7.5787 1.3866 39 1 8.6103 -8.6264 0.0387 40 1 9.7121 -7.9640 1.3206 41 1 13.1647 -9.0733 -2.9180 42 1 13.0861 -9.0329 -1.1308 43 1 14.9219 -5.7838 -1.3147 44 1 14.2315 -6.8858 -0.0841 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001689509228.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:46:12 Heat of formation + Delta-G solvation = -38.529531 kcal Electronic energy + Delta-G solvation = -26076.390245 eV Core-core repulsion = 22122.843903 eV Total energy + Delta-G solvation = -3953.546343 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.42833 -40.51829 -39.09639 -38.14704 -35.06056 -34.52673 -32.43377 -30.79803 -30.01573 -29.29005 -27.87103 -26.50385 -25.60304 -23.53225 -23.38251 -21.55068 -21.19388 -20.59889 -19.36303 -18.09332 -17.79551 -16.94005 -16.70901 -16.38655 -16.21006 -15.69373 -15.54907 -15.32301 -15.18679 -14.93159 -14.43499 -14.12289 -13.87478 -13.64694 -13.44121 -13.30054 -13.15148 -12.97344 -12.78798 -12.52917 -12.33215 -12.10798 -12.05749 -11.85249 -11.26496 -11.07514 -10.99532 -10.95691 -10.86181 -10.59353 -10.24139 -10.15404 -9.85087 -9.53490 -9.23798 -9.01735 -8.96189 -8.48904 -6.91137 -6.28533 -4.00149 1.92299 2.08496 2.79375 2.98810 3.00711 3.33037 3.36492 3.43723 3.52131 3.61598 3.69212 3.80856 3.96850 4.14595 4.30039 4.33969 4.34165 4.43011 4.47757 4.54070 4.63699 4.74165 4.76584 4.79217 4.85650 5.00191 5.09331 5.10641 5.16727 5.23952 5.26762 5.31274 5.41472 5.49958 5.58957 5.68176 5.78032 5.94121 6.00641 6.12508 6.47259 7.21296 7.57699 7.70966 7.94488 8.41587 8.49702 9.17837 10.80594 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.026488 B = 0.001816 C = 0.001732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1056.819162 B =15415.255089 C =16163.765412 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.096 3.904 3 Si 0.856 3.144 4 H -0.267 1.267 5 H -0.274 1.274 6 H -0.235 1.235 7 C -0.521 4.521 8 H 0.088 0.912 9 S -0.142 6.142 10 C -0.123 4.123 11 C 0.530 3.470 12 O -0.515 6.515 13 N -0.735 5.735 14 C 0.116 3.884 15 C 0.124 3.876 16 H 0.102 0.898 17 C -0.152 4.152 18 C 0.101 3.899 19 N -0.639 5.639 20 C 0.570 3.430 21 O -0.521 6.521 22 C -0.143 4.143 23 H 0.123 0.877 24 C -0.167 4.167 25 H 0.128 0.872 26 C 0.075 3.925 27 O -0.370 6.370 28 C 0.073 3.927 29 C -0.159 4.159 30 H 0.138 0.862 31 H 0.271 0.729 32 H 0.097 0.903 33 H 0.098 0.902 34 H 0.399 0.601 35 H 0.069 0.931 36 H 0.085 0.915 37 H 0.101 0.899 38 H 0.097 0.903 39 H 0.089 0.911 40 H 0.081 0.919 41 H 0.102 0.898 42 H 0.066 0.934 43 H 0.104 0.896 44 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.221 -24.595 1.316 34.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.113 4.113 3 Si 0.681 3.319 4 H -0.192 1.192 5 H -0.199 1.199 6 H -0.159 1.159 7 C -0.669 4.669 8 H 0.106 0.894 9 S 0.085 5.915 10 C -0.273 4.273 11 C 0.316 3.684 12 O -0.389 6.389 13 N -0.390 5.390 14 C -0.009 4.009 15 C 0.021 3.979 16 H 0.120 0.880 17 C -0.190 4.190 18 C -0.022 4.022 19 N -0.376 5.376 20 C 0.359 3.641 21 O -0.396 6.396 22 C -0.164 4.164 23 H 0.140 0.860 24 C -0.186 4.186 25 H 0.146 0.854 26 C -0.001 4.001 27 O -0.289 6.289 28 C -0.004 4.004 29 C -0.178 4.178 30 H 0.155 0.845 31 H 0.080 0.920 32 H 0.115 0.885 33 H 0.116 0.884 34 H 0.232 0.768 35 H 0.087 0.913 36 H 0.103 0.897 37 H 0.119 0.881 38 H 0.115 0.885 39 H 0.107 0.893 40 H 0.100 0.900 41 H 0.120 0.880 42 H 0.084 0.916 43 H 0.122 0.878 44 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 25.733 -22.290 0.770 34.053 hybrid contribution -1.450 -0.716 0.053 1.618 sum 24.283 -23.006 0.823 33.460 Atomic orbital electron populations 1.69936 1.05899 1.27762 1.48101 1.24709 0.94452 0.98964 0.93166 0.86737 0.81901 0.83271 0.79975 1.19194 1.19934 1.15919 1.22317 0.88277 0.97533 1.58774 0.89372 1.84845 1.09238 1.00046 1.97420 1.23268 0.93815 1.04432 1.05819 1.20288 0.90616 0.82165 0.75331 1.90726 1.58764 1.42130 1.47281 1.45797 1.06908 1.08197 1.78123 1.21449 0.81894 0.93765 1.03763 1.22927 0.81659 0.96084 0.97247 0.88011 1.23613 0.99254 0.99259 0.96850 1.22999 0.97419 0.89659 0.92121 1.49570 1.07478 1.27920 1.52599 1.19060 0.83108 0.84790 0.77098 1.90790 1.84347 1.21420 1.43073 1.22275 0.92704 1.03256 0.98183 0.85962 1.24224 1.01720 0.96041 0.96617 0.85387 1.22935 0.81552 0.92875 1.02787 1.89216 1.32433 1.38963 1.68258 1.22980 0.94006 0.89191 0.94182 1.24256 0.91046 0.99253 1.03256 0.84456 0.91950 0.88464 0.88391 0.76756 0.91277 0.89672 0.88087 0.88474 0.89263 0.90031 0.87962 0.91624 0.87780 0.91630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.62 13.97 55.49 0.78 -25.84 16 2 C 0.10 2.82 5.50 -17.43 -0.10 2.72 16 3 Si 0.86 22.02 27.74 -169.99 -4.72 17.31 16 4 H -0.27 -6.81 7.11 56.52 0.40 -6.40 16 5 H -0.27 -6.77 7.11 56.52 0.40 -6.36 16 6 H -0.24 -6.06 6.74 56.52 0.38 -5.68 16 7 C -0.52 -15.08 10.04 30.94 0.31 -14.77 16 8 H 0.09 2.64 8.03 -52.48 -0.42 2.22 16 9 S -0.14 -3.64 18.55 -107.50 -1.99 -5.64 16 10 C -0.12 -2.37 6.16 36.01 0.22 -2.15 16 11 C 0.53 9.63 7.85 -10.99 -0.09 9.54 16 12 O -0.52 -11.72 15.86 5.55 0.09 -11.63 16 13 N -0.73 -9.28 5.55 -60.29 -0.33 -9.61 16 14 C 0.12 1.43 5.39 -4.04 -0.02 1.40 16 15 C 0.12 0.96 4.08 -72.39 -0.30 0.67 16 16 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 17 C -0.15 -0.68 8.02 -26.22 -0.21 -0.89 16 18 C 0.10 0.39 8.42 -8.51 -0.07 0.32 16 19 N -0.64 -5.17 3.57 -177.44 -0.63 -5.80 16 20 C 0.57 5.99 7.78 -10.99 -0.09 5.91 16 21 O -0.52 -7.90 15.73 5.56 0.09 -7.81 16 22 C -0.14 -1.03 5.57 -91.77 -0.51 -1.54 16 23 H 0.12 0.61 8.14 -51.93 -0.42 0.18 16 24 C -0.17 -1.12 6.91 -89.02 -0.62 -1.74 16 25 H 0.13 0.91 8.14 -51.93 -0.42 0.49 16 26 C 0.08 0.41 7.44 37.93 0.28 0.69 16 27 O -0.37 -2.95 11.65 -35.23 -0.41 -3.36 16 28 C 0.07 0.46 7.44 37.93 0.28 0.74 16 29 C -0.16 -1.23 6.65 -89.03 -0.59 -1.82 16 30 H 0.14 1.27 7.82 -51.93 -0.41 0.87 16 31 H 0.27 7.61 8.31 -40.82 -0.34 7.27 16 32 H 0.10 1.73 8.14 -51.92 -0.42 1.31 16 33 H 0.10 1.72 8.14 -51.91 -0.42 1.30 16 34 H 0.40 3.52 8.48 -40.82 -0.35 3.18 16 35 H 0.07 0.92 7.89 -51.92 -0.41 0.51 16 36 H 0.09 1.38 7.04 -51.93 -0.37 1.01 16 37 H 0.10 0.54 7.95 -51.93 -0.41 0.12 16 38 H 0.10 0.25 8.14 -51.93 -0.42 -0.18 16 39 H 0.09 0.20 8.14 -51.93 -0.42 -0.23 16 40 H 0.08 0.20 8.14 -51.93 -0.42 -0.22 16 41 H 0.10 0.43 8.14 -51.93 -0.42 0.00 16 42 H 0.07 0.26 8.14 -51.93 -0.42 -0.16 16 43 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 44 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 LS Contribution 384.03 15.07 5.79 5.79 Total: -1.00 -38.59 384.03 -9.43 -48.02 By element: Atomic # 1 Polarization: 6.08 SS G_CDS: -6.59 Total: -0.51 kcal Atomic # 6 Polarization: 0.57 SS G_CDS: -1.49 Total: -0.92 kcal Atomic # 7 Polarization: -41.06 SS G_CDS: -0.19 Total: -41.26 kcal Atomic # 8 Polarization: -22.56 SS G_CDS: -0.24 Total: -22.80 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -4.72 Total: 17.31 kcal Atomic # 16 Polarization: -3.64 SS G_CDS: -1.99 Total: -5.64 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -38.59 -9.43 -48.02 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001689509228.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.493 kcal (2) G-P(sol) polarization free energy of solvation -38.594 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.022 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds