Wall clock time and date at job start Tue Mar 31 2020 23:46:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31630 * 1 3 3 Si 1.86803 * 119.99607 * 2 1 4 4 H 1.48500 * 109.46824 * 269.99375 * 3 2 1 5 5 H 1.48491 * 109.47288 * 30.00158 * 3 2 1 6 6 H 1.48503 * 109.46666 * 150.00343 * 3 2 1 7 7 C 1.38799 * 120.00162 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99767 * 0.02562 * 7 2 1 9 9 S 1.76195 * 119.99964 * 179.97438 * 7 2 1 10 10 C 1.81004 * 99.99917 * 180.02562 * 9 7 2 11 11 C 1.50701 * 109.47099 * 180.02562 * 10 9 7 12 12 O 1.21286 * 119.99984 * 359.97438 * 11 10 9 13 13 N 1.34770 * 120.00194 * 180.02562 * 11 10 9 14 14 C 1.46503 * 120.00222 * 179.97438 * 13 11 10 15 15 C 1.52999 * 109.46884 * 184.98257 * 14 13 11 16 16 H 1.08995 * 112.77994 * 45.09827 * 15 14 13 17 17 C 1.53504 * 113.46883 * 274.30962 * 15 14 13 18 18 C 1.53489 * 83.34416 * 219.15498 * 17 15 14 19 19 N 1.47065 * 87.98914 * 26.07367 * 18 17 15 20 20 C 1.34770 * 136.06276 * 152.91932 * 19 18 17 21 21 O 1.21279 * 120.00066 * 184.92949 * 20 19 18 22 22 C 1.50705 * 120.00030 * 4.91961 * 20 19 18 23 23 H 1.08999 * 115.51025 * 325.38326 * 22 20 19 24 24 C 1.53005 * 117.42693 * 110.65595 * 22 20 19 25 25 H 1.08996 * 119.81280 * 355.37155 * 24 22 20 26 26 C 1.54479 * 118.06383 * 198.08531 * 24 22 20 27 27 O 1.44420 * 104.80481 * 273.17648 * 26 24 22 28 28 C 1.44427 * 105.27540 * 40.51180 * 27 26 24 29 29 C 1.52997 * 117.43144 * 180.02562 * 22 20 19 30 30 H 1.08996 * 119.80864 * 5.65916 * 29 22 20 31 31 H 0.96997 * 120.00229 * 0.02562 * 1 2 3 32 32 H 1.08997 * 109.46841 * 60.00123 * 10 9 7 33 33 H 1.09003 * 109.46785 * 300.00017 * 10 9 7 34 34 H 0.97009 * 119.99864 * 359.97438 * 13 11 10 35 35 H 1.09007 * 109.46753 * 64.98684 * 14 13 11 36 36 H 1.08997 * 109.46939 * 304.98658 * 14 13 11 37 37 H 1.08998 * 114.20739 * 332.75040 * 17 15 14 38 38 H 1.09005 * 114.19857 * 105.56946 * 17 15 14 39 39 H 1.09002 * 113.47495 * 271.28495 * 18 17 15 40 40 H 1.09003 * 113.46752 * 140.85114 * 18 17 15 41 41 H 1.08996 * 110.37361 * 154.34488 * 26 24 22 42 42 H 1.09003 * 110.46241 * 32.05917 * 26 24 22 43 43 H 1.09001 * 110.37293 * 200.65821 * 28 27 26 44 44 H 1.09007 * 110.37186 * 78.31771 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4477 2.6527 0.7000 6 1 3.5478 1.4402 0.7000 7 6 2.0103 -1.2020 0.0005 8 1 1.4703 -2.1374 0.0005 9 16 3.7723 -1.2020 -0.0001 10 6 4.0866 -2.9845 0.0001 11 6 5.5731 -3.2324 0.0002 12 8 6.3441 -2.2962 -0.0003 13 7 6.0458 -4.4945 -0.0001 14 6 7.4909 -4.7356 -0.0005 15 6 7.7574 -6.2369 -0.1261 16 1 7.1424 -6.7123 -0.8902 17 6 7.7400 -6.9755 1.2195 18 6 8.9164 -7.7484 0.6074 19 7 9.1857 -6.5713 -0.2321 20 6 10.2656 -6.0353 -0.8343 21 8 10.1744 -4.9701 -1.4069 22 6 11.5867 -6.7596 -0.7961 23 1 11.7909 -7.3157 0.1188 24 6 12.1050 -7.3500 -2.1091 25 1 11.4870 -7.3029 -3.0057 26 6 13.2019 -8.4353 -2.0350 27 8 14.4451 -7.7014 -1.9970 28 6 14.1956 -6.5749 -1.1282 29 6 12.7740 -6.0977 -1.4984 30 1 12.6660 -5.0980 -1.9191 31 1 -0.4850 0.8400 -0.0004 32 1 3.6434 -3.4317 -0.8896 33 1 3.6440 -3.4313 0.8904 34 1 5.4291 -5.2434 0.0000 35 1 7.9210 -4.3668 0.9308 36 1 7.9459 -4.2140 -0.8425 37 1 8.0092 -6.3544 2.0737 38 1 6.8476 -7.5787 1.3866 39 1 8.6103 -8.6264 0.0387 40 1 9.7121 -7.9640 1.3206 41 1 13.1647 -9.0733 -2.9180 42 1 13.0861 -9.0329 -1.1308 43 1 14.9219 -5.7838 -1.3147 44 1 14.2315 -6.8858 -0.0841 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001689509228.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:46:11 Heat of formation + Delta-G solvation = -68.434027 kcal Electronic energy + Delta-G solvation = -26077.687002 eV Core-core repulsion = 22122.843903 eV Total energy + Delta-G solvation = -3954.843099 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.04630 -41.15403 -40.42933 -38.92463 -35.84982 -35.60501 -34.68063 -31.89813 -30.96996 -29.73437 -28.87306 -27.83970 -27.06092 -24.26957 -23.87787 -22.11468 -21.95342 -21.72481 -20.16396 -19.79857 -18.56578 -17.98963 -17.77128 -17.36055 -17.10765 -16.84181 -16.69524 -16.37372 -16.14633 -15.92319 -15.68231 -15.19353 -15.03168 -14.91613 -14.69604 -14.33210 -13.97473 -13.79536 -13.63737 -13.49957 -13.36314 -13.05811 -12.97419 -12.87370 -12.68926 -12.61471 -12.45664 -11.89753 -11.66841 -11.50504 -11.40730 -11.18613 -11.11991 -10.90298 -10.69455 -10.54246 -10.25146 -9.86035 -9.01898 -8.52735 -6.23578 0.95248 1.21385 1.29645 1.39267 1.48039 1.50558 1.61173 2.21612 2.25813 2.43823 2.71245 2.85529 2.97278 3.13742 3.35138 3.42632 3.59803 3.69281 3.81379 3.84546 3.93501 3.95793 4.00707 4.05131 4.22542 4.35186 4.37589 4.44812 4.48712 4.64488 4.67169 4.69688 4.72268 4.77027 4.90598 4.92501 4.99965 5.00351 5.22967 5.32963 5.68559 5.70052 6.10602 6.40700 6.59617 6.92883 6.97147 7.15145 8.59369 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.026488 B = 0.001816 C = 0.001732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1056.819162 B =15415.255089 C =16163.765412 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C 0.048 3.952 3 Si 0.911 3.089 4 H -0.265 1.265 5 H -0.257 1.257 6 H -0.240 1.240 7 C -0.526 4.526 8 H 0.067 0.933 9 S -0.185 6.185 10 C -0.106 4.106 11 C 0.532 3.468 12 O -0.568 6.568 13 N -0.703 5.703 14 C 0.122 3.878 15 C 0.118 3.882 16 H 0.123 0.877 17 C -0.138 4.138 18 C 0.105 3.895 19 N -0.643 5.643 20 C 0.558 3.442 21 O -0.585 6.585 22 C -0.131 4.131 23 H 0.154 0.846 24 C -0.159 4.159 25 H 0.117 0.883 26 C 0.077 3.923 27 O -0.393 6.393 28 C 0.078 3.922 29 C -0.180 4.180 30 H 0.109 0.891 31 H 0.277 0.723 32 H 0.117 0.883 33 H 0.122 0.878 34 H 0.422 0.578 35 H 0.056 0.944 36 H 0.041 0.959 37 H 0.092 0.908 38 H 0.129 0.871 39 H 0.118 0.882 40 H 0.103 0.897 41 H 0.114 0.886 42 H 0.090 0.910 43 H 0.107 0.893 44 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.017 -27.984 2.547 37.622 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.158 4.158 3 Si 0.734 3.266 4 H -0.189 1.189 5 H -0.181 1.181 6 H -0.164 1.164 7 C -0.674 4.674 8 H 0.085 0.915 9 S 0.041 5.959 10 C -0.257 4.257 11 C 0.318 3.682 12 O -0.447 6.447 13 N -0.359 5.359 14 C -0.003 4.003 15 C 0.014 3.986 16 H 0.140 0.860 17 C -0.175 4.175 18 C -0.015 4.015 19 N -0.378 5.378 20 C 0.349 3.651 21 O -0.465 6.465 22 C -0.152 4.152 23 H 0.172 0.828 24 C -0.178 4.178 25 H 0.135 0.865 26 C 0.001 3.999 27 O -0.312 6.312 28 C 0.002 3.998 29 C -0.199 4.199 30 H 0.127 0.873 31 H 0.086 0.914 32 H 0.135 0.865 33 H 0.140 0.860 34 H 0.260 0.740 35 H 0.074 0.926 36 H 0.059 0.941 37 H 0.111 0.889 38 H 0.148 0.852 39 H 0.135 0.865 40 H 0.121 0.879 41 H 0.133 0.867 42 H 0.108 0.892 43 H 0.125 0.875 44 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 26.495 -25.789 2.033 37.029 hybrid contribution -1.716 0.192 -0.347 1.761 sum 24.779 -25.597 1.687 35.666 Atomic orbital electron populations 1.70003 1.07127 1.28979 1.49121 1.25507 0.95253 1.02061 0.92979 0.85912 0.80668 0.79961 0.80104 1.18945 1.18143 1.16377 1.22435 0.89930 0.96812 1.58181 0.91523 1.84867 1.06819 1.06571 1.97611 1.23241 0.95068 0.99454 1.07947 1.20117 0.89715 0.83251 0.75119 1.90717 1.59636 1.44141 1.50165 1.45451 1.07788 1.07087 1.75524 1.21401 0.80614 0.97079 1.01203 1.23185 0.82189 0.92768 1.00468 0.85964 1.23612 1.01011 0.98642 0.94254 1.23321 0.97633 0.88783 0.91774 1.49812 1.06947 1.29180 1.51873 1.19696 0.84715 0.84329 0.76409 1.90763 1.85510 1.24283 1.45986 1.22264 0.90565 1.02753 0.99576 0.82816 1.24256 1.01486 0.96020 0.95990 0.86453 1.23108 0.79853 0.92247 1.04664 1.89192 1.33623 1.39537 1.68839 1.23027 0.92821 0.89041 0.94952 1.24225 0.92521 0.98572 1.04604 0.87298 0.91353 0.86506 0.85987 0.73960 0.92593 0.94053 0.88935 0.85239 0.86452 0.87895 0.86746 0.89151 0.87528 0.89595 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -55.64 13.97 21.65 0.30 -55.33 16 2 C 0.05 2.81 5.50 84.86 0.47 3.28 16 3 Si 0.91 45.73 27.74 68.60 1.90 47.63 16 4 H -0.26 -13.06 7.11 99.48 0.71 -12.35 16 5 H -0.26 -12.04 7.11 99.48 0.71 -11.33 16 6 H -0.24 -12.13 6.74 99.48 0.67 -11.46 16 7 C -0.53 -30.66 10.04 67.95 0.68 -29.98 16 8 H 0.07 4.04 8.03 -2.91 -0.02 4.02 16 9 S -0.19 -9.55 18.55 -56.49 -1.05 -10.59 16 10 C -0.11 -3.97 6.16 71.24 0.44 -3.53 16 11 C 0.53 19.05 7.85 87.66 0.69 19.74 16 12 O -0.57 -26.45 15.86 -3.05 -0.05 -26.50 16 13 N -0.70 -16.72 5.55 -463.05 -2.57 -19.29 16 14 C 0.12 2.98 5.39 86.38 0.47 3.45 16 15 C 0.12 1.55 4.08 41.79 0.17 1.72 16 16 H 0.12 1.16 8.14 -2.39 -0.02 1.14 16 17 C -0.14 -0.67 8.02 30.93 0.25 -0.42 16 18 C 0.11 0.33 8.42 83.18 0.70 1.03 16 19 N -0.64 -9.18 3.57 -833.69 -2.97 -12.15 16 20 C 0.56 11.72 7.78 87.66 0.68 12.41 16 21 O -0.59 -19.14 15.73 -3.03 -0.05 -19.18 16 22 C -0.13 -1.72 5.57 -11.54 -0.06 -1.79 16 23 H 0.15 0.98 8.14 -2.39 -0.02 0.96 16 24 C -0.16 -1.98 6.91 -9.76 -0.07 -2.05 16 25 H 0.12 1.69 8.14 -2.39 -0.02 1.67 16 26 C 0.08 0.67 7.44 72.49 0.54 1.20 16 27 O -0.39 -5.68 11.65 -148.98 -1.74 -7.41 16 28 C 0.08 0.90 7.44 72.48 0.54 1.44 16 29 C -0.18 -2.84 6.65 -9.77 -0.06 -2.90 16 30 H 0.11 2.32 7.82 -2.39 -0.02 2.30 16 31 H 0.28 15.60 8.31 -92.71 -0.77 14.83 16 32 H 0.12 3.95 8.14 -2.40 -0.02 3.93 16 33 H 0.12 4.01 8.14 -2.39 -0.02 3.99 16 34 H 0.42 6.11 8.48 -92.70 -0.79 5.32 16 35 H 0.06 1.52 7.89 -2.38 -0.02 1.50 16 36 H 0.04 1.42 7.04 -2.39 -0.02 1.40 16 37 H 0.09 0.68 7.95 -2.39 -0.02 0.66 16 38 H 0.13 -0.10 8.14 -2.38 -0.02 -0.12 16 39 H 0.12 -0.17 8.14 -2.39 -0.02 -0.19 16 40 H 0.10 -0.03 8.14 -2.39 -0.02 -0.05 16 41 H 0.11 0.68 8.14 -2.39 -0.02 0.66 16 42 H 0.09 0.36 8.14 -2.39 -0.02 0.34 16 43 H 0.11 1.11 8.14 -2.39 -0.02 1.09 16 44 H 0.09 0.64 8.14 -2.38 -0.02 0.62 16 Total: -1.00 -89.68 384.03 -0.60 -90.28 By element: Atomic # 1 Polarization: 8.75 SS G_CDS: 0.20 Total: 8.95 kcal Atomic # 6 Polarization: -1.83 SS G_CDS: 5.42 Total: 3.60 kcal Atomic # 7 Polarization: -81.53 SS G_CDS: -5.24 Total: -86.77 kcal Atomic # 8 Polarization: -51.26 SS G_CDS: -1.83 Total: -53.09 kcal Atomic # 14 Polarization: 45.73 SS G_CDS: 1.90 Total: 47.63 kcal Atomic # 16 Polarization: -9.55 SS G_CDS: -1.05 Total: -10.59 kcal Total: -89.68 -0.60 -90.28 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001689509228.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.845 kcal (2) G-P(sol) polarization free energy of solvation -89.683 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.838 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.596 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.279 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.434 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds