Wall clock time and date at job start Wed Apr 1 2020 00:05:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38356 * 119.86454 * 2 1 4 4 C 1.37944 * 120.16361 * 179.74086 * 3 2 1 5 5 C 1.39603 * 119.87527 * 0.51305 * 4 3 2 6 6 C 1.47850 * 120.13387 * 179.73933 * 5 4 3 7 7 O 1.21552 * 119.99729 * 149.15141 * 6 5 4 8 8 N 1.34766 * 120.00265 * 329.15075 * 6 5 4 9 9 C 1.46504 * 120.00500 * 3.84509 * 8 6 5 10 10 C 1.46504 * 120.00251 * 183.84557 * 8 6 5 11 11 C 1.53001 * 109.47015 * 89.99948 * 10 8 6 12 12 H 1.08993 * 109.47221 * 60.00312 * 11 10 8 13 13 O 1.42902 * 109.47381 * 300.00102 * 11 10 8 14 14 C 1.53008 * 109.46937 * 180.02562 * 11 10 8 15 15 N 1.46498 * 109.46726 * 185.00150 * 14 11 10 16 16 C 1.46506 * 120.00275 * 89.99858 * 15 14 11 17 17 C 1.36942 * 119.99908 * 269.99377 * 15 14 11 18 18 H 1.07992 * 119.99735 * 23.02598 * 17 15 14 19 19 C 1.38809 * 119.99819 * 203.01756 * 17 15 14 20 20 N 1.31621 * 120.00250 * 12.23396 * 19 17 15 21 21 Si 1.86806 * 119.99764 * 192.22300 * 19 17 15 22 22 H 1.48496 * 109.46741 * 60.00861 * 21 19 17 23 23 H 1.48497 * 109.46841 * 180.02562 * 21 19 17 24 24 H 1.48497 * 109.47352 * 300.00729 * 21 19 17 25 25 C 1.39543 * 119.72435 * 359.46823 * 5 4 3 26 26 C 1.38100 * 119.83675 * 0.27555 * 25 5 4 27 27 Cl 1.73598 * 119.93824 * 180.02562 * 26 25 5 28 28 H 1.09002 * 109.47363 * 270.02398 * 1 2 3 29 29 H 1.09004 * 109.46844 * 30.02324 * 1 2 3 30 30 H 1.09003 * 109.47289 * 150.01962 * 1 2 3 31 31 H 1.07996 * 119.91808 * 0.02562 * 3 2 1 32 32 H 1.07997 * 120.06737 * 180.27288 * 4 3 2 33 33 H 1.09002 * 109.46868 * 93.61871 * 9 8 6 34 34 H 1.08991 * 109.47702 * 213.62181 * 9 8 6 35 35 H 1.09006 * 109.46343 * 333.62612 * 9 8 6 36 36 H 1.08991 * 109.47318 * 210.00033 * 10 8 6 37 37 H 1.09001 * 109.46758 * 330.00382 * 10 8 6 38 38 H 0.96701 * 114.00120 * 300.00668 * 13 11 10 39 39 H 1.08996 * 109.46942 * 304.99571 * 14 11 10 40 40 H 1.08993 * 109.46974 * 65.00064 * 14 11 10 41 41 H 1.09004 * 109.46657 * 87.22199 * 16 15 14 42 42 H 1.08994 * 109.47036 * 207.21978 * 16 15 14 43 43 H 1.08993 * 109.46888 * 327.22270 * 16 15 14 44 44 H 0.97000 * 119.99721 * 179.97438 * 20 19 17 45 45 H 1.07997 * 120.07800 * 180.25411 * 25 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1959 1.1998 0.0000 4 6 3.5753 1.2070 0.0054 5 6 4.2770 0.0002 0.0000 6 6 5.7555 0.0013 -0.0001 7 8 6.3639 -0.9044 0.5357 8 7 6.4286 1.0064 -0.5941 9 6 5.6979 2.1401 -1.1660 10 6 7.8912 0.9654 -0.6682 11 6 8.3170 0.2601 -1.9574 12 1 7.9249 0.8049 -2.8161 13 8 7.8022 -1.0730 -1.9636 14 6 9.8445 0.2167 -2.0345 15 7 10.2526 -0.3504 -3.3221 16 6 10.4639 0.5279 -4.4755 17 6 10.4365 -1.7016 -3.4477 18 1 9.9477 -2.3790 -2.7633 19 6 11.2512 -2.2005 -4.4548 20 7 12.0326 -1.3868 -5.1328 21 14 11.2388 -4.0267 -4.8475 22 1 9.8713 -4.4356 -5.2569 23 1 12.1902 -4.3015 -5.9541 24 1 11.6455 -4.7948 -3.6434 25 6 3.5772 -1.2071 0.0005 26 6 2.1962 -1.2007 0.0004 27 17 1.3230 -2.7011 0.0017 28 1 -0.3634 0.0004 1.0277 29 1 -0.3633 0.8898 -0.5142 30 1 -0.3634 -0.8902 -0.5135 31 1 1.6524 2.1330 0.0004 32 1 4.1115 2.1445 0.0098 33 1 5.6320 2.9394 -0.4278 34 1 6.2237 2.5033 -2.0488 35 1 4.6941 1.8210 -1.4465 36 1 8.2839 1.9821 -0.6635 37 1 8.2833 0.4204 0.1906 38 1 8.1100 -1.6169 -1.2257 39 1 10.2419 1.2273 -1.9403 40 1 10.2316 -0.4028 -1.2255 41 1 11.4903 0.8948 -4.4694 42 1 10.2826 -0.0293 -5.3945 43 1 9.7761 1.3716 -4.4204 44 1 12.6022 -1.7355 -5.8363 45 1 4.1143 -2.1440 0.0005 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001700966122.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:05:38 Heat of formation + Delta-G solvation = -21.327022 kcal Electronic energy + Delta-G solvation = -27462.956754 eV Core-core repulsion = 23508.112661 eV Total energy + Delta-G solvation = -3954.844092 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.134 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.71824 -39.00147 -37.21103 -36.70266 -35.52007 -34.54633 -33.24154 -31.45634 -31.17982 -29.66385 -27.82987 -27.22057 -25.90441 -25.28056 -23.15359 -22.66697 -21.70325 -20.42622 -19.90688 -17.67568 -16.92891 -16.56242 -16.13957 -16.05929 -15.49894 -15.33267 -14.85022 -14.80921 -14.50413 -14.38397 -14.18404 -13.55046 -13.53285 -13.24995 -13.18259 -12.78886 -12.77008 -12.74066 -12.61379 -12.03162 -11.88572 -11.72426 -11.57459 -11.22557 -11.15360 -11.02422 -10.78926 -10.62330 -10.54584 -10.32079 -9.98047 -9.88811 -9.81589 -9.59911 -9.24776 -8.94473 -8.59765 -8.33270 -6.62625 -5.64978 -3.07913 0.50051 0.84400 1.79751 2.63025 2.90100 3.43994 3.47180 3.51194 3.54945 4.19401 4.32849 4.46971 4.58376 4.60880 4.83201 4.95303 5.00699 5.05387 5.13607 5.19163 5.23206 5.25329 5.42365 5.45425 5.51258 5.53061 5.63511 5.70684 5.75838 5.89663 5.90896 5.95798 5.99055 6.08889 6.31881 6.46967 6.53527 6.74610 6.83322 7.30766 7.42088 7.72781 7.93363 8.14182 8.41942 8.51964 9.32839 9.94851 10.43303 11.42229 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.014795 B = 0.002679 C = 0.002396 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1892.136228 B =10447.467523 C =11681.269219 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.057 4.057 3 C -0.120 4.120 4 C -0.097 4.097 5 C -0.118 4.118 6 C 0.565 3.435 7 O -0.528 6.528 8 N -0.600 5.600 9 C 0.060 3.940 10 C 0.080 3.920 11 C 0.072 3.928 12 H 0.085 0.915 13 O -0.542 6.542 14 C 0.125 3.875 15 N -0.593 5.593 16 C 0.163 3.837 17 C -0.237 4.237 18 H 0.069 0.931 19 C -0.005 4.005 20 N -0.915 5.915 21 Si 0.905 3.095 22 H -0.285 1.285 23 H -0.292 1.292 24 H -0.284 1.284 25 C -0.047 4.047 26 C -0.046 4.046 27 Cl -0.062 7.062 28 H 0.078 0.922 29 H 0.073 0.927 30 H 0.075 0.925 31 H 0.137 0.863 32 H 0.150 0.850 33 H 0.060 0.940 34 H 0.073 0.927 35 H 0.087 0.913 36 H 0.082 0.918 37 H 0.087 0.913 38 H 0.368 0.632 39 H 0.042 0.958 40 H 0.051 0.949 41 H 0.019 0.981 42 H 0.056 0.944 43 H -0.010 1.010 44 H 0.251 0.749 45 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.868 10.222 11.913 27.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.058 4.058 3 C -0.138 4.138 4 C -0.115 4.115 5 C -0.122 4.122 6 C 0.353 3.647 7 O -0.405 6.405 8 N -0.332 5.332 9 C -0.083 4.083 10 C -0.043 4.043 11 C 0.008 3.992 12 H 0.103 0.897 13 O -0.346 6.346 14 C -0.004 4.004 15 N -0.315 5.315 16 C 0.019 3.981 17 C -0.367 4.367 18 H 0.087 0.913 19 C -0.202 4.202 20 N -0.561 5.561 21 Si 0.736 3.264 22 H -0.211 1.211 23 H -0.218 1.218 24 H -0.210 1.210 25 C -0.066 4.066 26 C -0.073 4.073 27 Cl -0.033 7.033 28 H 0.097 0.903 29 H 0.092 0.908 30 H 0.094 0.906 31 H 0.155 0.845 32 H 0.168 0.832 33 H 0.078 0.922 34 H 0.092 0.908 35 H 0.105 0.895 36 H 0.101 0.899 37 H 0.105 0.895 38 H 0.215 0.785 39 H 0.060 0.940 40 H 0.070 0.930 41 H 0.037 0.963 42 H 0.075 0.925 43 H 0.008 0.992 44 H 0.061 0.939 45 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -22.747 9.785 11.483 27.295 hybrid contribution 0.292 -1.121 0.054 1.160 sum -22.455 8.664 11.537 26.691 Atomic orbital electron populations 1.20936 0.90045 1.03782 1.03147 1.19972 0.96954 0.91425 0.97476 1.20959 0.93786 0.97287 1.01775 1.22065 0.94564 0.98358 0.96531 1.19862 0.93659 0.93619 1.05048 1.18044 0.86452 0.81793 0.78408 1.90764 1.69419 1.35416 1.44879 1.47551 1.07312 1.21242 1.57093 1.22451 0.98519 0.88509 0.98829 1.22454 0.78392 1.02200 1.01222 1.23163 0.97149 0.83925 0.94940 0.89668 1.86558 1.72801 1.22752 1.52503 1.21318 0.91500 0.97274 0.90334 1.43748 1.78999 1.04287 1.04448 1.20782 0.95833 0.90637 0.90894 1.19175 1.21387 0.82041 1.14120 0.91300 1.25002 0.96947 0.97671 1.00557 1.70061 1.26962 1.33490 1.25598 0.86312 0.77232 0.85276 0.77602 1.21112 1.21833 1.21024 1.21121 0.91627 0.98912 0.94970 1.20678 0.92105 0.87206 1.07299 1.98370 1.76168 1.31874 1.96898 0.90343 0.90795 0.90577 0.84492 0.83229 0.92186 0.90807 0.89472 0.89917 0.89461 0.78538 0.93967 0.93027 0.96299 0.92494 0.99157 0.93886 0.83712 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.74 9.60 36.00 0.35 -0.39 16 2 C -0.06 -0.48 5.89 -104.50 -0.62 -1.10 16 3 C -0.12 -0.88 9.68 -39.65 -0.38 -1.26 16 4 C -0.10 -0.83 7.45 -39.18 -0.29 -1.12 16 5 C -0.12 -1.42 5.49 -104.97 -0.58 -2.00 16 6 C 0.56 8.17 6.90 -12.33 -0.09 8.09 16 7 O -0.53 -9.37 15.34 1.95 0.03 -9.34 16 8 N -0.60 -7.52 2.83 -182.69 -0.52 -8.04 16 9 C 0.06 0.50 8.79 59.85 0.53 1.03 16 10 C 0.08 1.08 5.18 -4.04 -0.02 1.06 16 11 C 0.07 1.25 3.48 -26.73 -0.09 1.16 16 12 H 0.09 1.57 8.14 -51.93 -0.42 1.15 16 13 O -0.54 -11.03 11.46 -38.60 -0.44 -11.48 16 14 C 0.12 2.49 5.36 -4.04 -0.02 2.47 16 15 N -0.59 -15.12 2.90 -181.12 -0.53 -15.64 16 16 C 0.16 4.09 8.99 59.85 0.54 4.63 16 17 C -0.24 -6.71 9.21 -15.06 -0.14 -6.84 16 18 H 0.07 1.93 7.57 -52.49 -0.40 1.53 16 19 C 0.00 -0.14 5.07 -17.43 -0.09 -0.23 16 20 N -0.91 -27.39 10.71 55.49 0.59 -26.79 16 21 Si 0.91 22.88 29.57 -169.99 -5.03 17.86 16 22 H -0.28 -7.21 7.11 56.52 0.40 -6.81 16 23 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 24 H -0.28 -7.06 7.11 56.52 0.40 -6.66 16 25 C -0.05 -0.58 9.38 -39.15 -0.37 -0.94 16 26 C -0.05 -0.49 6.31 -39.55 -0.25 -0.74 16 27 Cl -0.06 -0.62 27.27 -51.86 -1.41 -2.04 16 28 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.07 0.32 8.08 -51.93 -0.42 -0.10 16 30 H 0.08 0.49 6.89 -51.93 -0.36 0.13 16 31 H 0.14 0.60 8.06 -52.49 -0.42 0.18 16 32 H 0.15 0.94 4.69 -52.49 -0.25 0.69 16 33 H 0.06 0.35 7.38 -51.93 -0.38 -0.03 16 34 H 0.07 0.61 8.10 -51.93 -0.42 0.19 16 35 H 0.09 0.69 4.78 -51.93 -0.25 0.44 16 36 H 0.08 0.90 8.07 -51.93 -0.42 0.48 16 37 H 0.09 1.25 7.37 -51.93 -0.38 0.87 16 38 H 0.37 7.14 8.57 45.56 0.39 7.53 16 39 H 0.04 0.76 8.07 -51.93 -0.42 0.34 16 40 H 0.05 1.04 8.04 -51.93 -0.42 0.62 16 41 H 0.02 0.50 7.78 -51.93 -0.40 0.09 16 42 H 0.06 1.57 6.78 -51.93 -0.35 1.21 16 43 H -0.01 -0.22 8.09 -51.93 -0.42 -0.64 16 44 H 0.25 7.32 8.31 -40.82 -0.34 6.98 16 45 H 0.15 1.92 7.93 -52.49 -0.42 1.51 16 LS Contribution 379.04 15.07 5.71 5.71 Total: -1.00 -34.42 379.04 -8.83 -43.24 By element: Atomic # 1 Polarization: 8.42 SS G_CDS: -5.72 Total: 2.70 kcal Atomic # 6 Polarization: 5.34 SS G_CDS: -1.52 Total: 3.82 kcal Atomic # 7 Polarization: -50.03 SS G_CDS: -0.45 Total: -50.48 kcal Atomic # 8 Polarization: -20.41 SS G_CDS: -0.41 Total: -20.82 kcal Atomic # 14 Polarization: 22.88 SS G_CDS: -5.03 Total: 17.86 kcal Atomic # 17 Polarization: -0.62 SS G_CDS: -1.41 Total: -2.04 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -34.42 -8.83 -43.24 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700966122.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.916 kcal (2) G-P(sol) polarization free energy of solvation -34.416 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.500 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.827 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.243 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.327 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds