Wall clock time and date at job start Wed Apr 1 2020 00:05:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38356 * 119.86454 * 2 1 4 4 C 1.37944 * 120.16361 * 179.74086 * 3 2 1 5 5 C 1.39603 * 119.87527 * 0.51305 * 4 3 2 6 6 C 1.47850 * 120.13387 * 179.73933 * 5 4 3 7 7 O 1.21552 * 119.99729 * 149.15141 * 6 5 4 8 8 N 1.34766 * 120.00265 * 329.15075 * 6 5 4 9 9 C 1.46504 * 120.00500 * 3.84509 * 8 6 5 10 10 C 1.46504 * 120.00251 * 183.84557 * 8 6 5 11 11 C 1.53001 * 109.47015 * 89.99948 * 10 8 6 12 12 H 1.08993 * 109.47221 * 60.00312 * 11 10 8 13 13 O 1.42902 * 109.47381 * 300.00102 * 11 10 8 14 14 C 1.53008 * 109.46937 * 180.02562 * 11 10 8 15 15 N 1.46498 * 109.46726 * 185.00150 * 14 11 10 16 16 C 1.46506 * 120.00275 * 89.99858 * 15 14 11 17 17 C 1.36942 * 119.99908 * 269.99377 * 15 14 11 18 18 H 1.07992 * 119.99735 * 23.02598 * 17 15 14 19 19 C 1.38809 * 119.99819 * 203.01756 * 17 15 14 20 20 N 1.31621 * 120.00250 * 12.23396 * 19 17 15 21 21 Si 1.86806 * 119.99764 * 192.22300 * 19 17 15 22 22 H 1.48496 * 109.46741 * 60.00861 * 21 19 17 23 23 H 1.48497 * 109.46841 * 180.02562 * 21 19 17 24 24 H 1.48497 * 109.47352 * 300.00729 * 21 19 17 25 25 C 1.39543 * 119.72435 * 359.46823 * 5 4 3 26 26 C 1.38100 * 119.83675 * 0.27555 * 25 5 4 27 27 Cl 1.73598 * 119.93824 * 180.02562 * 26 25 5 28 28 H 1.09002 * 109.47363 * 270.02398 * 1 2 3 29 29 H 1.09004 * 109.46844 * 30.02324 * 1 2 3 30 30 H 1.09003 * 109.47289 * 150.01962 * 1 2 3 31 31 H 1.07996 * 119.91808 * 0.02562 * 3 2 1 32 32 H 1.07997 * 120.06737 * 180.27288 * 4 3 2 33 33 H 1.09002 * 109.46868 * 93.61871 * 9 8 6 34 34 H 1.08991 * 109.47702 * 213.62181 * 9 8 6 35 35 H 1.09006 * 109.46343 * 333.62612 * 9 8 6 36 36 H 1.08991 * 109.47318 * 210.00033 * 10 8 6 37 37 H 1.09001 * 109.46758 * 330.00382 * 10 8 6 38 38 H 0.96701 * 114.00120 * 300.00668 * 13 11 10 39 39 H 1.08996 * 109.46942 * 304.99571 * 14 11 10 40 40 H 1.08993 * 109.46974 * 65.00064 * 14 11 10 41 41 H 1.09004 * 109.46657 * 87.22199 * 16 15 14 42 42 H 1.08994 * 109.47036 * 207.21978 * 16 15 14 43 43 H 1.08993 * 109.46888 * 327.22270 * 16 15 14 44 44 H 0.97000 * 119.99721 * 179.97438 * 20 19 17 45 45 H 1.07997 * 120.07800 * 180.25411 * 25 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1959 1.1998 0.0000 4 6 3.5753 1.2070 0.0054 5 6 4.2770 0.0002 0.0000 6 6 5.7555 0.0013 -0.0001 7 8 6.3639 -0.9044 0.5357 8 7 6.4286 1.0064 -0.5941 9 6 5.6979 2.1401 -1.1660 10 6 7.8912 0.9654 -0.6682 11 6 8.3170 0.2601 -1.9574 12 1 7.9249 0.8049 -2.8161 13 8 7.8022 -1.0730 -1.9636 14 6 9.8445 0.2167 -2.0345 15 7 10.2526 -0.3504 -3.3221 16 6 10.4639 0.5279 -4.4755 17 6 10.4365 -1.7016 -3.4477 18 1 9.9477 -2.3790 -2.7633 19 6 11.2512 -2.2005 -4.4548 20 7 12.0326 -1.3868 -5.1328 21 14 11.2388 -4.0267 -4.8475 22 1 9.8713 -4.4356 -5.2569 23 1 12.1902 -4.3015 -5.9541 24 1 11.6455 -4.7948 -3.6434 25 6 3.5772 -1.2071 0.0005 26 6 2.1962 -1.2007 0.0004 27 17 1.3230 -2.7011 0.0017 28 1 -0.3634 0.0004 1.0277 29 1 -0.3633 0.8898 -0.5142 30 1 -0.3634 -0.8902 -0.5135 31 1 1.6524 2.1330 0.0004 32 1 4.1115 2.1445 0.0098 33 1 5.6320 2.9394 -0.4278 34 1 6.2237 2.5033 -2.0488 35 1 4.6941 1.8210 -1.4465 36 1 8.2839 1.9821 -0.6635 37 1 8.2833 0.4204 0.1906 38 1 8.1100 -1.6169 -1.2257 39 1 10.2419 1.2273 -1.9403 40 1 10.2316 -0.4028 -1.2255 41 1 11.4903 0.8948 -4.4694 42 1 10.2826 -0.0293 -5.3945 43 1 9.7761 1.3716 -4.4204 44 1 12.6022 -1.7355 -5.8363 45 1 4.1143 -2.1440 0.0005 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700966122.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:05:37 Heat of formation + Delta-G solvation = -44.083703 kcal Electronic energy + Delta-G solvation = -27463.943557 eV Core-core repulsion = 23508.112661 eV Total energy + Delta-G solvation = -3955.830896 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.134 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.62262 -39.91040 -38.68339 -37.49217 -36.85029 -36.17234 -33.98513 -33.31437 -32.09986 -30.99905 -28.68748 -28.19692 -27.88173 -26.62965 -24.19181 -23.67400 -22.80560 -22.11469 -20.86784 -18.86985 -18.49894 -17.81099 -17.30817 -16.88252 -16.83171 -16.48059 -16.29791 -15.97590 -15.79084 -15.29323 -15.18370 -14.93267 -14.88040 -14.61679 -14.33840 -13.99369 -13.73642 -13.46436 -13.33526 -13.22499 -13.10751 -12.80472 -12.72634 -12.67078 -12.52903 -12.43650 -12.24720 -12.09757 -11.93286 -11.92096 -11.89369 -11.82298 -11.20510 -10.93156 -10.56572 -9.99087 -9.68901 -9.58076 -8.66497 -7.82625 -5.26694 -0.25739 0.11282 1.03304 1.43139 1.45909 1.52596 1.68567 1.99732 2.51485 2.62124 3.31336 3.38124 3.57908 3.70259 3.77146 3.81272 3.96044 4.07647 4.20365 4.22318 4.26742 4.42264 4.51417 4.55892 4.63730 4.65906 4.76691 4.78112 4.80767 4.84311 4.90361 4.94187 5.01869 5.16466 5.21045 5.25695 5.33157 5.37194 5.48334 5.63472 5.70059 5.72174 6.34228 6.36615 6.90599 7.11791 7.18753 7.90009 8.31638 9.22087 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.014795 B = 0.002679 C = 0.002396 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1892.136228 B =10447.467523 C =11681.269219 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.054 4.054 3 C -0.108 4.108 4 C -0.085 4.085 5 C -0.141 4.141 6 C 0.556 3.444 7 O -0.577 6.577 8 N -0.599 5.599 9 C 0.050 3.950 10 C 0.091 3.909 11 C 0.082 3.918 12 H 0.081 0.919 13 O -0.565 6.565 14 C 0.122 3.878 15 N -0.613 5.613 16 C 0.176 3.824 17 C -0.240 4.240 18 H 0.064 0.936 19 C -0.060 4.060 20 N -0.942 5.942 21 Si 0.963 3.037 22 H -0.287 1.287 23 H -0.292 1.292 24 H -0.277 1.277 25 C -0.072 4.072 26 C -0.060 4.060 27 Cl -0.067 7.067 28 H 0.089 0.911 29 H 0.098 0.902 30 H 0.068 0.932 31 H 0.180 0.820 32 H 0.180 0.820 33 H 0.097 0.903 34 H 0.079 0.921 35 H 0.094 0.906 36 H 0.120 0.880 37 H 0.075 0.925 38 H 0.368 0.632 39 H 0.070 0.930 40 H 0.044 0.956 41 H -0.001 1.001 42 H 0.023 0.977 43 H 0.029 0.971 44 H 0.246 0.754 45 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.269 13.144 12.668 31.173 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.055 4.055 3 C -0.126 4.126 4 C -0.103 4.103 5 C -0.145 4.145 6 C 0.345 3.655 7 O -0.457 6.457 8 N -0.329 5.329 9 C -0.091 4.091 10 C -0.032 4.032 11 C 0.019 3.981 12 H 0.099 0.901 13 O -0.370 6.370 14 C -0.005 4.005 15 N -0.335 5.335 16 C 0.031 3.969 17 C -0.371 4.371 18 H 0.082 0.918 19 C -0.254 4.254 20 N -0.590 5.590 21 Si 0.792 3.208 22 H -0.213 1.213 23 H -0.218 1.218 24 H -0.203 1.203 25 C -0.091 4.091 26 C -0.087 4.087 27 Cl -0.038 7.038 28 H 0.108 0.892 29 H 0.117 0.883 30 H 0.087 0.913 31 H 0.197 0.803 32 H 0.196 0.804 33 H 0.115 0.885 34 H 0.098 0.902 35 H 0.112 0.888 36 H 0.138 0.862 37 H 0.093 0.907 38 H 0.215 0.785 39 H 0.088 0.912 40 H 0.063 0.937 41 H 0.017 0.983 42 H 0.042 0.958 43 H 0.047 0.953 44 H 0.056 0.944 45 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -25.184 12.753 12.257 30.775 hybrid contribution 0.944 -1.948 -0.139 2.169 sum -24.241 10.805 12.118 29.176 Atomic orbital electron populations 1.21022 0.88078 1.04682 1.04098 1.20395 0.98429 0.90931 0.95784 1.21448 0.93326 0.98353 0.99475 1.22378 0.95251 0.97894 0.94801 1.19782 0.92331 0.94899 1.07443 1.18554 0.87626 0.81408 0.77881 1.90726 1.70564 1.37303 1.47138 1.47639 1.06967 1.21891 1.56442 1.22800 0.98426 0.87846 1.00067 1.22221 0.79495 1.03421 0.98103 1.22994 0.94925 0.83121 0.97042 0.90129 1.86524 1.73225 1.24389 1.52867 1.21531 0.93190 0.98183 0.87609 1.43993 1.79404 1.03653 1.06488 1.20541 0.95617 0.91105 0.89631 1.19401 1.20399 0.83673 1.13596 0.91812 1.25691 0.97319 1.01313 1.01051 1.70202 1.27880 1.34793 1.26151 0.85395 0.76815 0.81173 0.77392 1.21319 1.21800 1.20287 1.21010 0.92621 0.98358 0.97141 1.20797 0.91523 0.88056 1.08284 1.98360 1.75993 1.32471 1.96981 0.89217 0.88304 0.91317 0.80261 0.80353 0.88453 0.90198 0.88773 0.86155 0.90665 0.78538 0.91191 0.93721 0.98305 0.95782 0.95291 0.94434 0.86510 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.08 9.60 71.23 0.68 -0.40 16 2 C -0.05 -0.78 5.89 -19.79 -0.12 -0.90 16 3 C -0.11 -1.12 9.68 22.23 0.22 -0.91 16 4 C -0.09 -1.18 7.45 22.53 0.17 -1.01 16 5 C -0.14 -3.30 5.49 -20.09 -0.11 -3.41 16 6 C 0.56 16.05 6.90 86.79 0.60 16.65 16 7 O -0.58 -21.49 15.34 -0.66 -0.01 -21.50 16 8 N -0.60 -13.85 2.83 -850.19 -2.40 -16.25 16 9 C 0.05 0.64 8.79 127.77 1.12 1.76 16 10 C 0.09 2.28 5.18 86.38 0.45 2.73 16 11 C 0.08 2.77 3.48 30.60 0.11 2.88 16 12 H 0.08 2.83 8.14 -2.39 -0.02 2.81 16 13 O -0.57 -23.47 11.46 -145.76 -1.67 -25.14 16 14 C 0.12 4.76 5.36 86.38 0.46 5.22 16 15 N -0.61 -31.26 2.90 -726.94 -2.11 -33.37 16 16 C 0.18 8.81 8.99 127.77 1.15 9.96 16 17 C -0.24 -13.76 9.21 84.03 0.77 -12.98 16 18 H 0.06 3.65 7.57 -2.91 -0.02 3.63 16 19 C -0.06 -3.51 5.07 84.86 0.43 -3.08 16 20 N -0.94 -57.57 10.71 21.65 0.23 -57.34 16 21 Si 0.96 48.00 29.57 68.60 2.03 50.03 16 22 H -0.29 -14.23 7.11 99.48 0.71 -13.52 16 23 H -0.29 -14.41 7.11 99.48 0.71 -13.70 16 24 H -0.28 -13.36 7.11 99.48 0.71 -12.65 16 25 C -0.07 -1.84 9.38 22.55 0.21 -1.62 16 26 C -0.06 -1.25 6.31 22.29 0.14 -1.11 16 27 Cl -0.07 -1.36 27.27 -2.72 -0.07 -1.44 16 28 H 0.09 0.64 8.14 -2.39 -0.02 0.62 16 29 H 0.10 0.41 8.08 -2.38 -0.02 0.39 16 30 H 0.07 0.74 6.89 -2.39 -0.02 0.72 16 31 H 0.18 0.39 8.06 -2.91 -0.02 0.37 16 32 H 0.18 1.33 4.69 -2.91 -0.01 1.32 16 33 H 0.10 0.59 7.38 -2.39 -0.02 0.57 16 34 H 0.08 0.99 8.10 -2.39 -0.02 0.97 16 35 H 0.09 1.11 4.78 -2.38 -0.01 1.10 16 36 H 0.12 2.13 8.07 -2.39 -0.02 2.11 16 37 H 0.07 2.11 7.37 -2.39 -0.02 2.10 16 38 H 0.37 14.99 8.57 -74.06 -0.63 14.35 16 39 H 0.07 2.34 8.07 -2.39 -0.02 2.33 16 40 H 0.04 1.80 8.04 -2.39 -0.02 1.78 16 41 H 0.00 -0.07 7.78 -2.39 -0.02 -0.09 16 42 H 0.02 1.32 6.78 -2.39 -0.02 1.31 16 43 H 0.03 1.20 8.09 -2.39 -0.02 1.18 16 44 H 0.25 14.68 8.31 -92.71 -0.77 13.91 16 45 H 0.12 3.51 7.93 -2.91 -0.02 3.49 16 Total: -1.00 -78.81 379.04 2.66 -76.15 By element: Atomic # 1 Polarization: 14.69 SS G_CDS: 0.38 Total: 15.07 kcal Atomic # 6 Polarization: 7.50 SS G_CDS: 6.28 Total: 13.78 kcal Atomic # 7 Polarization: -102.68 SS G_CDS: -4.28 Total: -106.96 kcal Atomic # 8 Polarization: -44.96 SS G_CDS: -1.68 Total: -46.64 kcal Atomic # 14 Polarization: 48.00 SS G_CDS: 2.03 Total: 50.03 kcal Atomic # 17 Polarization: -1.36 SS G_CDS: -0.07 Total: -1.44 kcal Total: -78.81 2.66 -76.15 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700966122.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.067 kcal (2) G-P(sol) polarization free energy of solvation -78.808 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.656 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.151 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.084 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds