Wall clock time and date at job start Wed Apr 1 2020 00:05:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38359 * 119.86172 * 2 1 4 4 C 1.37944 * 120.16015 * 179.72321 * 3 2 1 5 5 C 1.39596 * 119.88048 * 0.48559 * 4 3 2 6 6 C 1.47844 * 120.14083 * 179.79414 * 5 4 3 7 7 O 1.21554 * 119.99849 * 44.58048 * 6 5 4 8 8 N 1.34774 * 120.00248 * 224.58200 * 6 5 4 9 9 C 1.46503 * 119.99875 * 355.24496 * 8 6 5 10 10 C 1.46504 * 120.00118 * 175.24285 * 8 6 5 11 11 C 1.52996 * 109.47011 * 90.00369 * 10 8 6 12 12 H 1.08998 * 109.47002 * 304.99380 * 11 10 8 13 13 O 1.42897 * 109.47684 * 64.99791 * 11 10 8 14 14 C 1.53007 * 109.46877 * 185.00059 * 11 10 8 15 15 N 1.46497 * 109.46967 * 179.97438 * 14 11 10 16 16 C 1.46499 * 119.99975 * 270.00020 * 15 14 11 17 17 C 1.36938 * 119.99984 * 89.99885 * 15 14 11 18 18 H 1.08002 * 120.00066 * 2.44774 * 17 15 14 19 19 C 1.38811 * 120.00096 * 182.45436 * 17 15 14 20 20 N 1.31628 * 120.00164 * 31.09515 * 19 17 15 21 21 Si 1.86803 * 119.99958 * 211.10123 * 19 17 15 22 22 H 1.48493 * 109.47164 * 94.99457 * 21 19 17 23 23 H 1.48500 * 109.46722 * 214.99393 * 21 19 17 24 24 H 1.48498 * 109.47014 * 334.98855 * 21 19 17 25 25 C 1.39547 * 119.72177 * 359.51333 * 5 4 3 26 26 C 1.38103 * 119.83875 * 0.25569 * 25 5 4 27 27 Cl 1.73590 * 119.93879 * 179.97438 * 26 25 5 28 28 H 1.08995 * 109.47040 * 270.02275 * 1 2 3 29 29 H 1.09002 * 109.47064 * 30.02411 * 1 2 3 30 30 H 1.08999 * 109.47006 * 150.02147 * 1 2 3 31 31 H 1.07996 * 119.91940 * 359.97438 * 3 2 1 32 32 H 1.08001 * 120.06096 * 180.25427 * 4 3 2 33 33 H 1.09000 * 109.46729 * 274.05034 * 9 8 6 34 34 H 1.08999 * 109.47072 * 34.05149 * 9 8 6 35 35 H 1.08997 * 109.47168 * 154.05281 * 9 8 6 36 36 H 1.08996 * 109.47088 * 329.99858 * 10 8 6 37 37 H 1.09000 * 109.46529 * 210.00317 * 10 8 6 38 38 H 0.96702 * 113.99964 * 59.99427 * 13 11 10 39 39 H 1.08998 * 109.46750 * 299.99476 * 14 11 10 40 40 H 1.08993 * 109.47033 * 59.99837 * 14 11 10 41 41 H 1.09003 * 109.47607 * 94.82661 * 16 15 14 42 42 H 1.08999 * 109.47009 * 214.82339 * 16 15 14 43 43 H 1.08994 * 109.47180 * 334.82500 * 16 15 14 44 44 H 0.96998 * 119.99801 * 180.02562 * 20 19 17 45 45 H 1.07996 * 120.08106 * 180.23085 * 25 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1959 1.1999 0.0000 4 6 3.5753 1.2071 0.0058 5 6 4.2771 0.0004 0.0013 6 6 5.7555 0.0014 0.0029 7 8 6.3620 0.7484 0.7456 8 7 6.4309 -0.8260 -0.8192 9 6 5.7037 -1.7989 -1.6383 10 6 7.8921 -0.7523 -0.8938 11 6 8.5040 -1.6976 0.1420 12 1 8.1068 -1.4611 1.1291 13 8 8.1759 -3.0476 -0.1926 14 6 10.0247 -1.5294 0.1505 15 7 10.6105 -2.4341 1.1427 16 6 10.7986 -1.9836 2.5240 17 6 10.9823 -3.7009 0.7791 18 1 10.8803 -4.0198 -0.2478 19 6 11.4900 -4.5752 1.7302 20 7 11.0863 -4.4945 2.9804 21 14 12.7464 -5.8662 1.2359 22 1 14.1145 -5.3503 1.4951 23 1 12.5247 -7.1018 2.0292 24 1 12.5985 -6.1729 -0.2095 25 6 3.5773 -1.2070 0.0014 26 6 2.1963 -1.2007 0.0005 27 17 1.3231 -2.7011 -0.0001 28 1 -0.3633 0.0004 1.0276 29 1 -0.3633 0.8898 -0.5142 30 1 -0.3633 -0.8902 -0.5135 31 1 1.6523 2.1331 -0.0004 32 1 4.1114 2.1446 0.0099 33 1 5.5338 -2.7066 -1.0591 34 1 4.7456 -1.3758 -1.9401 35 1 6.2906 -2.0383 -2.5249 36 1 8.2154 0.2685 -0.6899 37 1 8.2201 -1.0449 -1.8913 38 1 8.4987 -3.3274 -1.0601 39 1 10.4219 -1.7659 -0.8366 40 1 10.2749 -0.4997 0.4057 41 1 9.9440 -2.2918 3.1263 42 1 11.7079 -2.4267 2.9300 43 1 10.8838 -0.8972 2.5434 44 1 11.4414 -5.1053 3.6451 45 1 4.1144 -2.1439 0.0018 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001700966123.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:05:42 Heat of formation + Delta-G solvation = -29.574541 kcal Electronic energy + Delta-G solvation = -27429.293712 eV Core-core repulsion = 23474.091981 eV Total energy + Delta-G solvation = -3955.201731 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.134 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -40.63472 -39.01231 -37.33077 -36.68357 -35.42934 -34.50914 -33.26098 -31.42225 -31.16736 -29.75149 -27.86341 -26.94171 -25.89334 -25.31894 -23.15019 -22.72482 -21.75733 -20.44364 -19.82086 -17.61658 -16.92519 -16.60159 -16.09742 -15.95094 -15.77925 -15.35188 -14.73960 -14.63402 -14.53016 -14.43050 -14.11687 -13.63931 -13.52350 -13.30529 -13.06694 -12.85336 -12.67084 -12.66689 -12.47792 -12.13103 -11.91880 -11.73054 -11.59541 -11.41137 -11.21435 -11.18311 -10.81531 -10.63153 -10.49827 -10.26142 -10.03488 -9.96239 -9.82295 -9.60555 -9.22044 -8.99139 -8.51490 -8.19525 -6.84410 -5.72076 -2.90756 0.54153 0.83285 1.78752 2.58259 2.92209 3.31856 3.45578 3.53257 3.54796 4.19974 4.34151 4.48699 4.58734 4.70982 4.87397 4.98534 5.01714 5.11472 5.19753 5.20403 5.22920 5.34911 5.36233 5.41728 5.47092 5.62087 5.69161 5.74026 5.78051 5.90792 5.94994 5.97251 6.01130 6.07381 6.32897 6.44643 6.55411 6.77143 6.82808 7.30684 7.46779 7.69381 7.91199 8.09125 8.34040 8.42876 9.26900 9.95247 10.40183 11.37655 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.017558 B = 0.002540 C = 0.002375 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1594.344086 B =11022.325660 C =11787.122308 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.059 4.059 3 C -0.116 4.116 4 C -0.061 4.061 5 C -0.116 4.116 6 C 0.556 3.444 7 O -0.529 6.529 8 N -0.597 5.597 9 C 0.077 3.923 10 C 0.083 3.917 11 C 0.069 3.931 12 H 0.091 0.909 13 O -0.537 6.537 14 C 0.126 3.874 15 N -0.594 5.594 16 C 0.156 3.844 17 C -0.241 4.241 18 H 0.074 0.926 19 C -0.001 4.001 20 N -0.894 5.894 21 Si 0.886 3.114 22 H -0.291 1.291 23 H -0.295 1.295 24 H -0.281 1.281 25 C -0.076 4.076 26 C -0.045 4.045 27 Cl -0.062 7.062 28 H 0.079 0.921 29 H 0.073 0.927 30 H 0.075 0.925 31 H 0.138 0.862 32 H 0.137 0.863 33 H 0.066 0.934 34 H 0.068 0.932 35 H 0.073 0.927 36 H 0.088 0.912 37 H 0.078 0.922 38 H 0.358 0.642 39 H 0.048 0.952 40 H 0.048 0.952 41 H 0.016 0.984 42 H 0.059 0.941 43 H 0.000 1.000 44 H 0.251 0.749 45 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.288 10.980 -11.415 26.534 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.060 4.060 3 C -0.134 4.134 4 C -0.080 4.080 5 C -0.119 4.119 6 C 0.344 3.656 7 O -0.406 6.406 8 N -0.329 5.329 9 C -0.066 4.066 10 C -0.040 4.040 11 C 0.005 3.995 12 H 0.109 0.891 13 O -0.339 6.339 14 C -0.003 4.003 15 N -0.315 5.315 16 C 0.011 3.989 17 C -0.370 4.370 18 H 0.092 0.908 19 C -0.199 4.199 20 N -0.539 5.539 21 Si 0.716 3.284 22 H -0.218 1.218 23 H -0.222 1.222 24 H -0.207 1.207 25 C -0.095 4.095 26 C -0.071 4.071 27 Cl -0.033 7.033 28 H 0.097 0.903 29 H 0.092 0.908 30 H 0.094 0.906 31 H 0.156 0.844 32 H 0.155 0.845 33 H 0.085 0.915 34 H 0.086 0.914 35 H 0.092 0.908 36 H 0.106 0.894 37 H 0.096 0.904 38 H 0.203 0.797 39 H 0.067 0.933 40 H 0.066 0.934 41 H 0.035 0.965 42 H 0.078 0.922 43 H 0.019 0.981 44 H 0.061 0.939 45 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -21.242 11.144 -10.278 26.097 hybrid contribution 0.759 -1.057 -0.640 1.451 sum -20.482 10.087 -10.918 25.308 Atomic orbital electron populations 1.20930 0.90015 1.03679 1.03247 1.19959 0.96966 0.91382 0.97721 1.20954 0.93673 0.97344 1.01406 1.21268 0.93919 0.97493 0.95330 1.19864 0.93496 0.93742 1.04796 1.18213 0.86605 0.80374 0.80413 1.90816 1.69449 1.41266 1.39067 1.47678 1.07407 1.35743 1.42082 1.22048 0.96904 0.92417 0.95239 1.22512 0.78229 1.02577 1.00706 1.23263 0.97649 0.81362 0.97212 0.89125 1.86686 1.79578 1.28248 1.39434 1.21392 0.90598 0.94171 0.94181 1.44087 1.70040 1.11483 1.05900 1.20950 1.01037 0.92154 0.84772 1.19098 1.34519 0.89613 0.93722 0.90790 1.24660 1.01635 0.98046 0.95578 1.70317 1.41993 1.39161 1.02450 0.86487 0.83358 0.80826 0.77744 1.21832 1.22249 1.20659 1.21451 0.92126 0.98890 0.97045 1.20673 0.92062 0.87212 1.07181 1.98374 1.76256 1.31747 1.96896 0.90290 0.90848 0.90588 0.84444 0.84507 0.91526 0.91380 0.90825 0.89378 0.90360 0.79736 0.93326 0.93417 0.96527 0.92249 0.98130 0.93933 0.83639 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.74 9.61 36.01 0.35 -0.39 16 2 C -0.06 -0.50 5.89 -104.50 -0.62 -1.12 16 3 C -0.12 -0.94 9.68 -39.64 -0.38 -1.32 16 4 C -0.06 -0.62 9.68 -39.18 -0.38 -1.00 16 5 C -0.12 -1.40 5.04 -104.97 -0.53 -1.93 16 6 C 0.56 8.31 7.28 -12.33 -0.09 8.22 16 7 O -0.53 -9.80 16.61 5.32 0.09 -9.71 16 8 N -0.60 -7.94 2.84 -182.69 -0.52 -8.46 16 9 C 0.08 0.78 8.63 59.85 0.52 1.29 16 10 C 0.08 1.15 5.07 -4.04 -0.02 1.13 16 11 C 0.07 1.25 3.48 -26.73 -0.09 1.16 16 12 H 0.09 2.01 8.14 -51.93 -0.42 1.59 16 13 O -0.54 -10.31 12.17 -35.23 -0.43 -10.74 16 14 C 0.13 2.49 5.43 -4.04 -0.02 2.46 16 15 N -0.59 -15.04 2.88 -181.12 -0.52 -15.57 16 16 C 0.16 4.02 9.16 59.85 0.55 4.57 16 17 C -0.24 -6.60 9.02 -15.06 -0.14 -6.74 16 18 H 0.07 1.95 7.99 -52.49 -0.42 1.53 16 19 C 0.00 -0.04 4.83 -17.43 -0.08 -0.13 16 20 N -0.89 -26.94 10.82 55.49 0.60 -26.34 16 21 Si 0.89 22.07 29.65 -169.99 -5.04 17.03 16 22 H -0.29 -7.28 7.11 56.52 0.40 -6.87 16 23 H -0.30 -7.50 7.11 56.52 0.40 -7.10 16 24 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 25 C -0.08 -0.84 7.44 -39.14 -0.29 -1.14 16 26 C -0.04 -0.44 6.31 -39.55 -0.25 -0.69 16 27 Cl -0.06 -0.58 27.27 -51.86 -1.41 -1.99 16 28 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.07 0.32 8.08 -51.93 -0.42 -0.10 16 30 H 0.08 0.46 6.88 -51.93 -0.36 0.10 16 31 H 0.14 0.74 8.06 -52.49 -0.42 0.31 16 32 H 0.14 1.29 8.06 -52.49 -0.42 0.87 16 33 H 0.07 0.72 7.01 -51.93 -0.36 0.36 16 34 H 0.07 0.59 6.02 -51.93 -0.31 0.28 16 35 H 0.07 0.61 7.85 -51.93 -0.41 0.20 16 36 H 0.09 1.27 7.49 -51.93 -0.39 0.88 16 37 H 0.08 0.87 7.86 -51.93 -0.41 0.46 16 38 H 0.36 5.62 9.05 45.56 0.41 6.03 16 39 H 0.05 0.88 8.04 -51.93 -0.42 0.46 16 40 H 0.05 0.88 7.86 -51.93 -0.41 0.47 16 41 H 0.02 0.46 7.91 -51.93 -0.41 0.05 16 42 H 0.06 1.65 6.43 -51.93 -0.33 1.31 16 43 H 0.00 0.00 7.84 -51.93 -0.41 -0.40 16 44 H 0.25 7.32 8.31 -40.82 -0.34 6.98 16 45 H 0.15 1.63 5.90 -52.49 -0.31 1.32 16 LS Contribution 383.00 15.07 5.77 5.77 Total: -1.00 -34.53 383.00 -8.72 -43.26 By element: Atomic # 1 Polarization: 8.17 SS G_CDS: -5.78 Total: 2.39 kcal Atomic # 6 Polarization: 5.86 SS G_CDS: -1.48 Total: 4.38 kcal Atomic # 7 Polarization: -49.93 SS G_CDS: -0.44 Total: -50.37 kcal Atomic # 8 Polarization: -20.12 SS G_CDS: -0.34 Total: -20.46 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.04 Total: 17.03 kcal Atomic # 17 Polarization: -0.58 SS G_CDS: -1.41 Total: -1.99 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -34.53 -8.72 -43.26 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700966123.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.681 kcal (2) G-P(sol) polarization free energy of solvation -34.532 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.850 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.725 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.256 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.575 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds