Wall clock time and date at job start Wed Apr 1 2020 00:05:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38421 * 119.84406 * 2 1 4 4 C 1.37895 * 120.18705 * 179.69716 * 3 2 1 5 5 C 1.39630 * 119.86245 * 0.60124 * 4 3 2 6 6 C 1.47768 * 120.15100 * 179.69579 * 5 4 3 7 7 O 1.21563 * 119.99819 * 227.90814 * 6 5 4 8 8 N 1.34775 * 119.99971 * 47.92150 * 6 5 4 9 9 C 1.46501 * 120.00456 * 355.58874 * 8 6 5 10 10 C 1.46504 * 119.99880 * 175.59817 * 8 6 5 11 11 C 1.53001 * 109.47451 * 89.99247 * 10 8 6 12 12 H 1.08997 * 109.46923 * 304.99963 * 11 10 8 13 13 O 1.42906 * 109.46873 * 65.00212 * 11 10 8 14 14 C 1.52995 * 109.46955 * 184.99863 * 11 10 8 15 15 N 1.46497 * 109.47038 * 180.02562 * 14 11 10 16 16 C 1.46504 * 120.00151 * 90.00263 * 15 14 11 17 17 C 1.36939 * 120.00497 * 270.00213 * 15 14 11 18 18 H 1.08005 * 119.99575 * 28.03377 * 17 15 14 19 19 C 1.38812 * 120.00547 * 208.03310 * 17 15 14 20 20 N 1.31623 * 119.99680 * 8.20086 * 19 17 15 21 21 Si 1.86790 * 120.00102 * 188.20383 * 19 17 15 22 22 H 1.48501 * 109.47340 * 90.00171 * 21 19 17 23 23 H 1.48503 * 109.47195 * 209.99827 * 21 19 17 24 24 H 1.48496 * 109.47635 * 330.00171 * 21 19 17 25 25 C 1.39692 * 119.68977 * 359.42282 * 5 4 3 26 26 Cl 1.73594 * 120.09418 * 180.29676 * 25 5 4 27 27 C 1.38159 * 119.81192 * 0.27576 * 25 5 4 28 28 H 1.09001 * 109.47261 * 269.97219 * 1 2 3 29 29 H 1.09001 * 109.47268 * 29.97862 * 1 2 3 30 30 H 1.09002 * 109.46772 * 149.98211 * 1 2 3 31 31 H 1.08000 * 119.90502 * 0.02562 * 3 2 1 32 32 H 1.08006 * 120.06970 * 180.31728 * 4 3 2 33 33 H 1.08999 * 109.47134 * 274.66355 * 9 8 6 34 34 H 1.09000 * 109.46573 * 34.66023 * 9 8 6 35 35 H 1.08992 * 109.47377 * 154.65625 * 9 8 6 36 36 H 1.09002 * 109.46728 * 329.99287 * 10 8 6 37 37 H 1.08996 * 109.47185 * 209.99746 * 10 8 6 38 38 H 0.96699 * 113.99799 * 59.99808 * 13 11 10 39 39 H 1.08996 * 109.47753 * 300.00212 * 14 11 10 40 40 H 1.09001 * 109.46895 * 60.00612 * 14 11 10 41 41 H 1.08993 * 109.47114 * 85.68180 * 16 15 14 42 42 H 1.09001 * 109.47238 * 205.68552 * 16 15 14 43 43 H 1.09012 * 109.46722 * 325.68523 * 16 15 14 44 44 H 0.97001 * 119.99980 * 179.97438 * 20 19 17 45 45 H 1.08005 * 119.93220 * 179.97438 * 27 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1958 1.2006 0.0000 4 6 3.5747 1.2089 0.0063 5 6 4.2772 0.0022 0.0000 6 6 5.7549 0.0037 -0.0001 7 8 6.3633 -0.6974 -0.7850 8 7 6.4281 0.7820 0.8702 9 6 5.6981 1.6982 1.7500 10 6 7.8899 0.7121 0.9364 11 6 8.4937 1.7233 -0.0403 12 1 8.0949 1.5464 -1.0391 13 8 8.1593 3.0481 0.3785 14 6 10.0152 1.5644 -0.0630 15 7 10.5934 2.5330 -0.9977 16 6 10.9850 3.8633 -0.5250 17 6 10.7680 2.1952 -2.3132 18 1 10.1189 1.4651 -2.7738 19 6 11.7790 2.7909 -3.0546 20 7 12.6689 3.5558 -2.4585 21 14 11.8765 2.5071 -4.8983 22 1 11.0863 3.5490 -5.6020 23 1 13.2936 2.5806 -5.3362 24 1 11.3271 1.1661 -5.2225 25 6 3.5766 -1.2063 -0.0005 26 17 4.4394 -2.7126 -0.0005 27 6 2.1950 -1.1993 -0.0004 28 1 -0.3634 -0.0005 1.0277 29 1 -0.3634 0.8902 -0.5135 30 1 -0.3633 -0.8899 -0.5141 31 1 1.6517 2.1336 0.0004 32 1 4.1102 2.1468 0.0115 33 1 5.5122 2.6352 1.2250 34 1 4.7478 1.2473 2.0359 35 1 6.2909 1.8936 2.6435 36 1 8.2181 -0.2923 0.6686 37 1 8.2193 0.9439 1.9492 38 1 8.4832 3.2751 1.2609 39 1 10.4141 1.7413 0.9358 40 1 10.2703 0.5540 -0.3824 41 1 11.9966 3.8223 -0.1215 42 1 10.9535 4.5680 -1.3560 43 1 10.2959 4.1894 0.2542 44 1 13.3757 3.9718 -2.9766 45 1 1.6514 -2.1325 -0.0012 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001700967174.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:05:50 Heat of formation + Delta-G solvation = -35.670609 kcal Electronic energy + Delta-G solvation = -27538.660332 eV Core-core repulsion = 23583.194255 eV Total energy + Delta-G solvation = -3955.466077 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.134 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.58884 -38.94825 -37.34329 -36.66948 -35.33466 -34.49546 -33.20279 -31.35239 -31.16022 -29.83155 -27.92398 -26.93649 -25.77198 -25.28480 -23.13623 -22.67335 -21.74049 -20.55380 -19.78615 -17.59306 -16.84931 -16.46935 -16.25228 -16.08424 -15.72315 -15.21375 -14.79773 -14.57350 -14.47860 -14.35066 -14.21767 -13.58135 -13.52196 -13.16019 -13.02657 -12.98474 -12.81701 -12.63651 -12.57073 -12.16560 -11.81770 -11.62460 -11.52551 -11.32757 -11.11121 -11.07225 -10.84176 -10.62779 -10.46532 -10.31724 -10.05244 -9.85931 -9.84013 -9.64329 -9.21917 -8.96307 -8.57065 -8.33048 -6.53893 -5.66672 -3.15218 0.54335 0.84094 1.90265 2.63899 2.93580 3.29771 3.44532 3.50033 3.53114 4.22009 4.37917 4.43767 4.56166 4.76898 4.81048 4.92935 4.96863 5.01566 5.14758 5.18055 5.24807 5.32151 5.38897 5.43831 5.50529 5.57613 5.65186 5.72193 5.83651 5.87290 5.95737 6.00129 6.04666 6.08642 6.35044 6.53223 6.68975 6.82949 6.95363 7.33569 7.48829 7.77385 7.90054 8.15787 8.21651 8.52331 9.33171 9.94272 10.45463 11.39275 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.015563 B = 0.002704 C = 0.002615 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1798.713904 B =10351.766717 C =10704.922792 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.058 4.058 3 C -0.123 4.123 4 C -0.073 4.073 5 C -0.121 4.121 6 C 0.554 3.446 7 O -0.512 6.512 8 N -0.600 5.600 9 C 0.080 3.920 10 C 0.086 3.914 11 C 0.071 3.929 12 H 0.098 0.902 13 O -0.549 6.549 14 C 0.126 3.874 15 N -0.591 5.591 16 C 0.168 3.832 17 C -0.253 4.253 18 H 0.064 0.936 19 C 0.004 3.996 20 N -0.909 5.909 21 Si 0.904 3.096 22 H -0.288 1.288 23 H -0.291 1.291 24 H -0.278 1.278 25 C 0.010 3.990 26 Cl -0.047 7.047 27 C -0.120 4.120 28 H 0.076 0.924 29 H 0.072 0.928 30 H 0.070 0.930 31 H 0.135 0.865 32 H 0.142 0.858 33 H 0.064 0.936 34 H 0.065 0.935 35 H 0.072 0.928 36 H 0.090 0.910 37 H 0.077 0.923 38 H 0.357 0.643 39 H 0.037 0.963 40 H 0.056 0.944 41 H 0.013 0.987 42 H 0.051 0.949 43 H -0.002 1.002 44 H 0.252 0.748 45 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.739 -5.886 12.834 28.484 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.059 4.059 3 C -0.141 4.141 4 C -0.092 4.092 5 C -0.125 4.125 6 C 0.340 3.660 7 O -0.387 6.387 8 N -0.332 5.332 9 C -0.063 4.063 10 C -0.037 4.037 11 C 0.008 3.992 12 H 0.116 0.884 13 O -0.353 6.353 14 C -0.003 4.003 15 N -0.313 5.313 16 C 0.024 3.976 17 C -0.383 4.383 18 H 0.082 0.918 19 C -0.194 4.194 20 N -0.554 5.554 21 Si 0.734 3.266 22 H -0.215 1.215 23 H -0.217 1.217 24 H -0.204 1.204 25 C -0.018 4.018 26 Cl -0.017 7.017 27 C -0.139 4.139 28 H 0.095 0.905 29 H 0.091 0.909 30 H 0.089 0.911 31 H 0.152 0.848 32 H 0.160 0.840 33 H 0.082 0.918 34 H 0.084 0.916 35 H 0.090 0.910 36 H 0.109 0.891 37 H 0.095 0.905 38 H 0.202 0.798 39 H 0.055 0.945 40 H 0.074 0.926 41 H 0.031 0.969 42 H 0.070 0.930 43 H 0.017 0.983 44 H 0.062 0.938 45 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -24.414 -6.286 11.743 27.811 hybrid contribution 0.485 -0.185 -0.476 0.704 sum -23.929 -6.471 11.268 27.229 Atomic orbital electron populations 1.20856 0.90206 1.03429 1.02849 1.20035 0.96591 0.92353 0.96887 1.21095 0.93773 0.98070 1.01184 1.21477 0.94312 0.97123 0.96237 1.19832 0.94061 0.92856 1.05721 1.18115 0.86458 0.80198 0.81201 1.90860 1.69017 1.41267 1.37521 1.47626 1.07222 1.40191 1.38193 1.21955 0.96863 0.93449 0.94046 1.22413 0.78227 1.02534 1.00553 1.23276 0.97842 0.80688 0.97413 0.88443 1.86632 1.79913 1.31751 1.36971 1.21283 0.90524 0.94849 0.93645 1.43652 1.72037 1.09893 1.05674 1.20725 0.94488 0.86136 0.96266 1.19186 1.10010 1.22958 0.86130 0.91798 1.25117 0.95598 1.00224 0.98505 1.70047 1.15826 1.35392 1.34112 0.86253 0.76731 0.78132 0.85458 1.21478 1.21708 1.20359 1.20924 0.92283 0.87144 1.01429 1.98413 1.76840 1.30086 1.96398 1.20889 0.91408 0.98992 1.02609 0.90545 0.90910 0.91074 0.84763 0.83996 0.91775 0.91589 0.90973 0.89128 0.90473 0.79787 0.94470 0.92577 0.96904 0.93021 0.98337 0.93816 0.84468 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.54 10.00 36.00 0.36 -0.18 16 2 C -0.06 -0.44 5.88 -104.55 -0.62 -1.06 16 3 C -0.12 -0.96 9.68 -39.64 -0.38 -1.34 16 4 C -0.07 -0.72 7.75 -39.19 -0.30 -1.03 16 5 C -0.12 -1.53 4.93 -104.94 -0.52 -2.04 16 6 C 0.55 8.55 6.78 -12.36 -0.08 8.46 16 7 O -0.51 -9.91 15.42 5.31 0.08 -9.83 16 8 N -0.60 -7.96 2.84 -182.72 -0.52 -8.48 16 9 C 0.08 0.74 8.69 59.85 0.52 1.26 16 10 C 0.09 1.21 5.07 -4.04 -0.02 1.19 16 11 C 0.07 1.27 3.48 -26.73 -0.09 1.17 16 12 H 0.10 2.16 8.14 -51.93 -0.42 1.73 16 13 O -0.55 -9.35 11.55 -35.23 -0.41 -9.76 16 14 C 0.13 2.60 5.38 -4.05 -0.02 2.57 16 15 N -0.59 -15.35 2.83 -181.12 -0.51 -15.87 16 16 C 0.17 4.26 8.77 59.85 0.52 4.79 16 17 C -0.25 -7.32 9.61 -15.06 -0.14 -7.46 16 18 H 0.06 1.86 7.84 -52.48 -0.41 1.45 16 19 C 0.00 0.11 5.12 -17.43 -0.09 0.02 16 20 N -0.91 -27.42 10.82 55.49 0.60 -26.82 16 21 Si 0.90 22.95 29.56 -169.99 -5.03 17.92 16 22 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 23 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 24 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 25 C 0.01 0.12 6.34 -39.07 -0.25 -0.13 16 26 Cl -0.05 -0.61 27.14 -51.86 -1.41 -2.02 16 27 C -0.12 -1.09 9.47 -39.60 -0.37 -1.47 16 28 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 29 H 0.07 0.28 8.08 -51.93 -0.42 -0.14 16 30 H 0.07 0.29 8.08 -51.93 -0.42 -0.13 16 31 H 0.13 0.71 8.06 -52.49 -0.42 0.29 16 32 H 0.14 1.30 6.21 -52.48 -0.33 0.97 16 33 H 0.06 0.59 7.05 -51.93 -0.37 0.23 16 34 H 0.07 0.54 6.21 -51.93 -0.32 0.21 16 35 H 0.07 0.55 7.84 -51.93 -0.41 0.14 16 36 H 0.09 1.40 7.49 -51.93 -0.39 1.01 16 37 H 0.08 0.86 7.86 -51.93 -0.41 0.45 16 38 H 0.36 4.73 8.81 45.56 0.40 5.13 16 39 H 0.04 0.68 8.07 -51.93 -0.42 0.26 16 40 H 0.06 1.19 8.04 -51.93 -0.42 0.78 16 41 H 0.01 0.34 7.78 -51.93 -0.40 -0.06 16 42 H 0.05 1.44 6.92 -51.93 -0.36 1.08 16 43 H 0.00 -0.04 6.81 -51.92 -0.35 -0.39 16 44 H 0.25 7.34 8.31 -40.82 -0.34 7.00 16 45 H 0.14 0.98 8.06 -52.48 -0.42 0.56 16 LS Contribution 382.25 15.07 5.76 5.76 Total: -1.00 -35.52 382.25 -8.77 -44.29 By element: Atomic # 1 Polarization: 5.87 SS G_CDS: -5.85 Total: 0.02 kcal Atomic # 6 Polarization: 6.26 SS G_CDS: -1.49 Total: 4.77 kcal Atomic # 7 Polarization: -50.73 SS G_CDS: -0.43 Total: -51.16 kcal Atomic # 8 Polarization: -19.26 SS G_CDS: -0.32 Total: -19.58 kcal Atomic # 14 Polarization: 22.95 SS G_CDS: -5.03 Total: 17.92 kcal Atomic # 17 Polarization: -0.61 SS G_CDS: -1.41 Total: -2.02 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -35.52 -8.77 -44.29 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700967174.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.618 kcal (2) G-P(sol) polarization free energy of solvation -35.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.767 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.289 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds